Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TRNAU1AP	Gene	0	53.38	112.76	39.71	45.45	102.18	53.63	49.89
2	373830	Transcript	0	75.90	175.00	45.56	56.35	180.68	59.89	75.78
3	ER1a	ExonRegion	0	7.63	13.89	3.06	3.21	25.73	6.99	4.29
4	E1a_E2a	KnownJunction	0	41.64	69.12	19.93	18.77	180.90	24.55	30.05
5	I1	Intron	0	11.05	20.00	5.90	12.99	1.39	24.82	2.74
6	I1_AR1	ActiveIntronRegion	0	11.09	20.07	5.92	13.04	1.40	24.92	2.75
7	E2_Aa	NovelBoundary	1	36.65	24.35	25.21	13.00	4.36	39.34	5.85
8	ER2a	ExonRegion	0	44.97	132.30	33.68	37.91	75.40	63.33	33.01
9	E2_Da	NovelBoundary	1	7.73	6.33	3.49	27.66	0.00	17.90	0.00
10	E2a_E3a	KnownJunction	0	50.47	191.81	26.74	55.10	32.27	53.28	35.91
11	E3_Aa	NovelBoundary	1	11.80	7.30	3.32	6.29	2.35	21.84	0.80
12	ER3a	ExonRegion	0	107.49	189.65	62.51	61.43	124.73	63.81	67.04
13	E3_Da	NovelBoundary	1	16.34	19.41	12.24	4.23	12.49	29.37	3.28
14	E3a_E4a	KnownJunction	1	33.16	127.18	26.66	24.19	255.33	15.60	63.37
15	I3	Intron	0	12.92	19.46	12.69	9.60	6.69	14.36	3.11
16	I3_AR1	ActiveIntronRegion	0	13.02	19.62	12.79	9.68	6.75	14.47	3.14
17	E4_Aa	NovelBoundary	1	10.23	15.61	3.72	4.01	7.17	25.86	7.72
18	ER4a	ExonRegion	1	54.96	180.94	46.11	41.39	271.36	39.49	75.58
19	E4_Da	NovelBoundary	0	9.75	14.13	4.02	5.04	7.17	17.85	3.81
20	E4a_E5a	KnownJunction	0	83.48	197.35	59.03	66.67	150.37	59.42	69.59
21	I4	Intron	0	7.44	5.68	4.12	3.93	2.95	11.54	1.21
22	I4_SR1	SilentIntronRegion	0	7.45	5.69	4.13	3.93	2.95	11.56	1.21
23	E5_Aa	NovelBoundary	1	12.08	8.54	8.54	6.20	7.31	27.23	4.60
24	ER5a	ExonRegion	0	109.33	239.80	67.55	84.94	193.27	92.80	97.17
25	E5_Da	NovelBoundary	1	40.56	41.09	28.08	35.19	10.79	57.54	7.09
26	E5a_E6a	KnownJunction	0	109.14	232.21	61.66	76.51	266.97	82.46	111.66
27	I5	Intron	0	16.61	16.27	11.66	9.43	9.25	19.52	3.93
28	I5_AR2	ActiveIntronRegion	0	30.74	26.73	20.10	13.86	17.10	23.98	6.90
29	I5_AR3	ActiveIntronRegion	0	33.04	27.13	22.01	14.55	15.52	22.07	7.20
30	I5_AR4	ActiveIntronRegion	0	29.71	26.73	23.93	13.09	12.42	27.18	6.07
31	I5_AR5	ActiveIntronRegion	0	29.58	26.52	25.85	13.51	12.28	27.79	5.51
32	I5_AR6	ActiveIntronRegion	1	31.84	28.29	20.52	12.50	13.80	37.66	5.43
33	E6_Aa	NovelBoundary	1	58.38	24.46	28.91	19.32	15.88	35.91	6.26
34	ER6a	ExonRegion	0	146.46	268.82	80.21	93.10	299.40	98.51	134.09
35	E6_Da	NovelBoundary	1	19.98	11.51	6.18	10.00	8.23	22.40	2.54
36	E6a_E7a	KnownJunction	0	161.66	264.76	75.36	97.50	267.71	104.22	139.37
37	E6a_E8a	NovelJunction	0	3.10	12.22	2.23	9.16	1.06	7.72	0.89
38	I6_AR1	ActiveIntronRegion	0	7.82	7.87	4.13	9.36	4.10	9.49	2.36
39	E7_Aa	NovelBoundary	0	4.16	10.11	6.45	8.64	3.07	21.55	4.20
40	ER7a	ExonRegion	0	126.84	266.31	72.43	97.30	285.91	111.04	148.83
41	E7_Da	NovelBoundary	1	3.84	1.47	7.46	12.08	2.03	16.16	2.79
42	E7a_E8a	KnownJunction	0	76.02	209.65	39.49	55.43	238.21	57.75	104.32
43	I7_AR1	ActiveIntronRegion	1	5.85	1.65	4.80	6.97	2.78	14.23	0.31
44	E8_Aa	NovelBoundary	1	40.74	5.99	20.35	2.79	1.18	17.85	0.00
45	ER8a	ExonRegion	0	72.37	201.52	42.50	65.36	222.88	62.74	97.38
46	E8_Da	NovelBoundary	1	12.00	7.25	7.06	2.93	8.58	17.13	2.62
47	E8a_E9a	KnownJunction	0	40.24	138.87	28.96	48.57	145.03	43.55	55.48
48	E9_Aa	NovelBoundary	1	10.55	11.48	10.20	6.58	3.25	20.96	3.43
49	ER9a	ExonRegion	0	24.37	50.75	28.65	30.52	36.07	38.52	21.19