Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ST3GAL3	Gene	0	5.24	4.35	18.02	12.68	18.91	33.21	47.20
2	361392	Transcript	0	0	0	0	0	0	0	0
3	335430	Transcript	0	0.00	0.00	0.75	0.00	0.00	3.67	0.00
4	351035	Transcript	0	0	0	0	0	0	0	0
5	372374	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	372375	Transcript	0	0	0	0	0	0	0	0
7	347631	Transcript	0	0	0	0	0	0	0	0
8	353126	Transcript	0	0.00	0.00	0.00	0.00	1.15	5.52	2.28
9	262915	Transcript	0	0	0	0	0	0	0	0
10	361400	Transcript	0	0	0	0	0	0	0	0
11	330208	Transcript	0	0	0	0	0	0	0	0
12	372362	Transcript	0	0	0	0	0	0	0	0
13	372369	Transcript	0	0.00	0.00	0.00	0.00	0.85	0.00	0.00
14	372365	Transcript	0	0	0	0	0	0	0	0
15	372367	Transcript	0	0.00	0.00	0.00	0.00	1.11	0.00	0.00
16	332628	Transcript	0	0	0	0	0	0	0	0
17	372372	Transcript	0	0	0	0	0	0	0	0
18	372366	Transcript	0	0	0	0	0	0	0	0
19	372368	Transcript	0	0	0	0	0	0	0	0
20	372377	Transcript	0	0	0	0	0	0	0	0
21	361746	Transcript	0	0	0	0	0	0	0	0
22	361812	Transcript	0	0	0	0	0	0	0	0
23	IG48	Intergenic	0	4.37	2.57	2.86	3.39	1.23	3.10	9.32
24	IG48_AR1	ActiveIntergenicRegion	0	3.82	2.18	3.19	0.87	1.18	2.67	10.21
25	IG48_SR1	SilentIntergenicRegion	0	4.92	2.79	4.61	5.25	0.83	0.66	13.96
26	IG48_AR2	ActiveIntergenicRegion	0	3.64	2.78	4.40	5.58	1.14	3.86	13.73
27	IG48_SR2	SilentIntergenicRegion	0	5.99	2.65	3.69	3.35	0.61	3.49	8.89
28	IG48_AR3	ActiveIntergenicRegion	0	2.47	2.63	0.94	3.71	2.32	2.87	8.23
29	ER1a	ExonRegion	0	0.83	0.77	0.57	0.91	0.60	7.16	2.42
30	E1a_E2a	KnownJunction	0	2.10	1.18	2.14	2.22	0.00	14.53	12.98
31	I1_SR1	SilentIntronRegion	0	7.18	3.35	4.23	3.53	2.29	3.91	9.87
32	I1_AR1	ActiveIntronRegion	1	6.16	2.87	1.84	1.97	2.44	2.56	10.48
33	E2_Ab	NovelBoundary	0	5.92	3.26	14.96	9.18	11.04	25.73	33.79
34	ER2a	ExonRegion	0	3.84	2.55	6.03	6.28	6.17	19.77	19.72
35	ER2b	ExonRegion	0	5.83	4.57	23.77	15.81	18.66	35.09	46.23
36	E2_Da	KnownBoundary	0	2.47	1.63	1.78	4.09	4.36	2.65	7.47
37	E2a_E3a	KnownJunction	0	1.85	2.97	18.52	17.96	9.59	34.12	47.44
38	E2a_E4a	KnownJunction	0	0.00	0.00	4.79	2.82	4.13	11.93	6.28
39	ER2c	ExonRegion	0	1.06	0.94	2.59	1.61	2.20	2.56	3.84
40	E2b_E3a	KnownJunction	0	0.00	0.00	2.31	0.00	0.00	2.68	3.45
41	E2b_E4a	KnownJunction	0	0.00	0.00	0.72	0.00	0.00	0.00	0.00
42	I2_SR1	SilentIntronRegion	1	1.46	2.34	0.66	0.89	4.12	0.77	9.74
43	I2_AR1	ActiveIntronRegion	1	2.31	3.64	1.35	1.06	5.30	1.23	11.94
44	ER3a	ExonRegion	0	3.44	3.90	19.77	20.60	13.26	39.62	55.79
45	E3a_E4a	KnownJunction	0	3.35	4.07	11.84	18.50	28.03	31.54	40.39
46	ER4a	ExonRegion	0	12.47	8.81	28.31	23.84	40.29	46.67	64.95
47	E4a_E5a	KnownJunction	0	2.60	3.10	7.60	4.28	3.14	6.08	4.94
48	E4a_E6a	KnownJunction	0	17.22	8.01	23.01	12.57	40.27	34.28	61.14
49	E4a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	ER5a	ExonRegion	0	2.39	1.80	12.95	5.23	3.81	7.17	8.02
51	E5a_E6a	KnownJunction	1	2.24	0.00	11.19	2.17	5.19	3.32	5.43
52	ER6a	ExonRegion	0	17.13	9.99	42.25	23.76	36.15	48.89	88.49
53	E6a_E7a	KnownJunction	0	6.74	3.68	23.91	14.52	35.41	35.46	61.93
54	ER7a	ExonRegion	0	14.45	10.56	37.16	14.78	43.27	54.90	73.92
55	E7a_E8a	KnownJunction	0	26.67	4.31	62.05	17.15	76.86	38.97	110.77
56	E7a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	5.49	0.00
57	ER8a	ExonRegion	0	16.28	6.38	40.12	12.82	44.73	52.97	86.80
58	E8a_E9a	KnownJunction	0	5.44	7.59	17.73	16.28	19.94	54.64	64.25
59	ER9a	ExonRegion	0	4.99	9.62	21.57	14.00	31.49	52.26	60.83
60	E9a_E10a	KnownJunction	0	8.11	3.94	28.01	8.51	41.22	43.92	66.68
61	E9a_E11a	KnownJunction	0	0.00	0.00	0.75	0.00	0.00	3.67	0.00
62	E9a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	1.11	0.00	0.00
63	E9b_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.87
64	ER9b	ExonRegion	0	0.00	0.00	2.71	0.00	0.81	2.26	1.87
65	ER10a	ExonRegion	0	8.03	7.61	32.01	11.57	35.54	45.55	74.96
66	E10a_E11a	KnownJunction	0	5.26	2.39	21.83	6.56	32.32	30.82	72.57
67	E10a_E11b	KnownJunction	0	0.00	0.00	0.00	0.00	0.85	0.00	0.00
68	E10a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	1.15	5.52	2.28
69	E11_Aa	NovelBoundary	0	0.00	0.00	1.84	1.38	1.11	10.48	9.66
70	ER11a	ExonRegion	0	8.59	4.46	34.90	10.30	26.63	40.71	85.61
71	E11_Ab	KnownBoundary	0	3.77	5.25	24.44	14.74	19.23	53.20	67.03
72	ER11b	ExonRegion	0	4.12	2.04	18.28	16.34	16.54	39.91	68.97
73	E11a_E12a	KnownJunction	0	4.74	1.34	15.42	16.47	17.29	28.43	70.04
74	ER12a	ExonRegion	0	5.85	2.21	20.15	12.12	25.61	39.04	79.22
75	E12a_E13a	KnownJunction	0	6.73	2.94	12.75	11.92	16.97	26.26	59.98
76	ER13a	ExonRegion	0	6.96	5.30	15.28	14.28	20.43	34.02	54.89
77	E13_Da	KnownBoundary	0	5.02	3.26	9.59	11.51	21.30	27.47	28.72
78	E13_Db	KnownBoundary	1	1.67	0.00	5.63	9.92	11.99	30.52	47.38
79	ER13b	ExonRegion	0	5.02	2.75	10.59	16.28	21.99	42.26	55.25
80	ER13c	ExonRegion	0	2.62	3.40	11.27	14.28	13.06	31.59	36.86
81	IG49	Intergenic	0	0.52	0.73	4.51	3.02	0.28	7.99	3.86
82	IG49_AR2	ActiveIntergenicRegion	0	1.54	0.00	6.98	2.20	0.00	14.79	6.95
83	IG49_SR1	SilentIntergenicRegion	0	0.49	0.78	4.80	3.10	0.32	7.91	3.90