Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HDAC1	Gene	0	173.60	205.97	130.80	67.56	519.06	54.32	197.24
2	373548	Transcript	0	205.86	240.07	146.25	78.70	611.81	50.98	253.66
3	373541	Transcript	0	0.00	0.00	0.00	0.00	2.12	0.00	0.00
4	ER1a	ExonRegion	0	144.26	109.77	101.38	34.70	693.25	18.00	155.43
5	E1a_E2a	KnownJunction	0	158.30	138.63	104.23	55.78	194.38	32.40	154.56
6	I1_SR3	SilentIntronRegion	1	2.38	2.39	0.60	1.45	0.68	13.72	0.20
7	E2_Aa	NovelBoundary	1	0.00	7.64	0.89	1.08	0.00	14.87	0.00
8	ER2a	ExonRegion	0	149.75	197.45	113.45	52.25	260.68	53.75	195.65
9	E2_Da	NovelBoundary	1	5.14	18.68	1.44	3.60	1.15	44.30	0.77
10	E2a_E3a	KnownJunction	0	299.78	230.64	224.77	91.60	357.11	46.77	341.65
11	I2	Intron	1	5.30	5.23	0.94	4.64	1.37	26.52	0.64
12	I2_SR1	SilentIntronRegion	1	7.15	7.77	1.16	5.07	2.84	27.76	0.59
13	I2_SR2	SilentIntronRegion	1	3.79	5.08	0.55	3.13	0.85	29.07	0.50
14	E3_Aa	NovelBoundary	1	11.47	6.70	1.01	10.16	1.04	38.46	0.00
15	ER3a	ExonRegion	0	255.90	261.42	192.95	89.67	1086.15	76.42	328.31
16	E3_Da	NovelBoundary	1	11.87	11.19	3.92	5.39	1.18	30.74	2.15
17	E3a_E4a	KnownJunction	0	194.45	230.95	127.75	84.33	691.61	42.91	199.91
18	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	2.12	0.00	0.00
19	I3	Intron	1	7.63	6.23	2.43	3.98	5.58	16.03	2.59
20	I3_SR1	SilentIntronRegion	1	10.72	8.84	3.25	7.50	6.05	21.48	3.31
21	I3_SR2	SilentIntronRegion	1	6.59	2.32	1.97	1.63	4.10	12.67	1.47
22	I3_AR3	ActiveIntronRegion	1	7.63	7.33	2.25	3.14	5.24	15.12	1.87
23	I3_SR3	SilentIntronRegion	1	5.37	6.33	1.56	3.21	7.20	16.34	2.67
24	E4_Aa	NovelBoundary	1	7.76	17.44	4.40	4.77	3.83	37.31	4.08
25	ER4a	ExonRegion	0	201.07	242.66	144.89	74.80	655.42	49.76	244.44
26	E4_Da	NovelBoundary	1	10.83	6.02	5.03	4.28	1.91	39.10	1.42
27	E4a_E5a	KnownJunction	0	222.04	246.58	166.12	76.97	488.40	60.27	316.62
28	I4_SR1	SilentIntronRegion	0	6.35	5.59	1.95	5.72	2.46	14.67	0.37
29	E5_Aa	NovelBoundary	0	8.40	9.56	0.89	9.29	3.97	20.48	0.00
30	ER5a	ExonRegion	0	223.22	266.67	154.39	90.18	666.89	64.25	295.18
31	E5_Da	NovelBoundary	1	124.54	58.27	76.48	21.84	17.17	28.11	12.57
32	E5a_E6a	KnownJunction	0	251.52	230.40	147.47	76.78	742.46	58.21	271.92
33	I5	Intron	0	13.34	30.17	15.31	19.02	18.59	19.06	6.81
34	I5_AR1	ActiveIntronRegion	0	16.19	33.07	18.42	23.09	23.51	19.28	5.36
35	I5_SR1	SilentIntronRegion	0	19.68	43.18	13.90	25.10	26.85	31.77	12.93
36	I5_AR2	ActiveIntronRegion	0	10.69	26.44	13.89	15.77	14.45	16.84	6.61
37	E6_Aa	NovelBoundary	0	7.51	4.10	6.29	7.72	8.37	14.87	5.32
38	ER6a	ExonRegion	0	220.99	286.14	161.61	87.48	813.28	67.93	285.89
39	E6_Da	NovelBoundary	0	19.48	16.16	7.44	10.38	29.85	24.04	9.76
40	E6a_E7a	KnownJunction	0	206.07	287.75	163.23	70.03	730.91	71.13	273.06
41	E6a_E8a	NovelJunction	0	0.00	4.83	0.00	4.71	21.44	1.31	3.10
42	I6	Intron	0	24.72	17.36	16.92	11.89	38.34	24.57	15.61
43	I6_AR1	ActiveIntronRegion	0	24.31	21.37	17.11	13.75	39.73	25.22	18.80
44	I6_SR1	SilentIntronRegion	0	24.87	10.41	16.67	10.39	32.20	17.55	12.17
45	I6_AR2	ActiveIntronRegion	1	25.24	15.04	16.85	10.35	38.71	25.94	13.17
46	E7_Aa	NovelBoundary	1	37.34	28.37	12.66	11.62	35.99	37.39	20.05
47	ER7a	ExonRegion	0	217.06	286.43	171.68	84.50	797.39	68.06	253.71
48	E7_Da	NovelBoundary	1	19.64	12.30	21.74	11.89	34.00	37.49	11.02
49	E7a_E8a	KnownJunction	0	167.72	271.23	149.05	100.75	698.27	44.25	231.95
50	I7	Intron	0	19.29	15.46	11.86	13.10	22.20	26.78	9.33
51	I7_AR1	ActiveIntronRegion	0	11.18	8.42	7.77	5.69	15.29	12.17	4.45
52	I7_SR1	SilentIntronRegion	0	26.51	17.62	13.30	17.13	25.85	35.42	11.55
53	I7_AR2	ActiveIntronRegion	0	14.85	17.25	12.67	12.55	21.89	24.75	9.54
54	E8_Aa	NovelBoundary	1	22.66	24.70	19.07	13.41	32.87	42.99	15.19
55	ER8a	ExonRegion	0	194.73	301.82	161.47	109.76	760.87	67.76	269.51
56	E8_Da	NovelBoundary	1	16.89	14.29	8.02	8.59	4.20	31.14	3.68
57	E8a_E9a	KnownJunction	0	242.66	269.12	187.45	109.50	616.29	77.13	257.94
58	E9_Aa	NovelBoundary	1	114.76	10.80	80.42	19.64	3.69	23.69	6.79
59	ER9a	ExonRegion	0	245.70	301.03	176.59	95.42	777.01	67.12	301.53
60	E9_Da	NovelBoundary	0	9.70	16.58	6.71	9.67	1.94	16.13	0.79
61	E9a_E10a	KnownJunction	0	241.97	344.87	169.18	100.32	849.04	80.37	280.80
62	I9	Intron	0	12.48	8.17	7.77	11.23	4.96	18.46	2.35
63	I9_SR1	SilentIntronRegion	0	12.52	8.20	7.79	11.27	4.98	18.52	2.36
64	E10_Aa	NovelBoundary	0	21.60	25.01	9.14	20.59	10.51	35.38	4.94
65	ER10a	ExonRegion	0	285.10	316.23	201.98	96.32	817.98	78.34	317.65
66	E10_Da	NovelBoundary	1	6.69	4.99	3.75	11.11	6.29	28.54	3.20
67	E10a_E11a	KnownJunction	0	334.70	343.71	218.29	97.34	902.91	46.34	329.85
68	E11_Aa	NovelBoundary	0	9.06	13.14	4.47	8.75	7.52	17.74	0.80
69	ER11a	ExonRegion	0	185.45	227.52	147.36	74.02	479.38	51.86	208.07
70	E11_Da	NovelBoundary	0	18.74	19.91	16.12	21.00	8.64	30.61	4.47
71	E11a_E12a	KnownJunction	0	139.81	146.86	88.94	38.39	421.22	35.67	126.02
72	I11	Intron	0	12.28	8.48	6.18	12.73	4.49	12.16	4.52
73	I11_AR1	ActiveIntronRegion	0	12.35	8.54	6.22	12.81	4.52	12.25	4.55
74	ER12a	ExonRegion	0	158.56	146.19	118.16	53.09	329.24	40.29	131.15
75	E12a_E13a	KnownJunction	0	116.56	130.83	79.70	41.15	125.64	31.92	87.99
76	I12	Intron	1	10.96	7.02	6.74	8.67	3.22	22.09	1.89
77	I12_AR1	ActiveIntronRegion	1	11.08	6.26	6.23	6.64	3.74	24.48	2.16
78	I12_AR2	ActiveIntronRegion	1	18.16	6.96	11.21	13.26	2.14	24.19	1.35
79	I12_AR3	ActiveIntronRegion	1	16.33	6.68	10.71	12.63	2.58	22.53	1.69
80	I12_AR4	ActiveIntronRegion	1	11.59	9.28	7.16	13.26	2.52	21.96	2.20
81	I12_SR1	SilentIntronRegion	0	6.44	5.84	6.05	5.76	3.06	12.81	0.44
82	ER13a	ExonRegion	0	98.11	128.18	63.83	34.30	87.10	24.09	74.73
83	E13_Da	NovelBoundary	0	9.01	14.06	3.99	14.09	3.09	23.85	2.08
84	E13a_E14a	KnownJunction	0	61.50	93.82	48.04	31.78	89.38	14.98	49.36
85	I13	Intron	1	6.24	9.33	4.74	4.61	2.31	17.06	1.34
86	I13_AR1	ActiveIntronRegion	1	7.25	12.32	6.10	6.23	6.71	20.67	0.67
87	I13_SR2	SilentIntronRegion	1	8.64	13.22	6.27	7.99	2.82	23.94	1.36
88	I13_AR2	ActiveIntronRegion	1	3.89	4.30	2.80	1.51	1.09	13.41	1.76
89	ER14a	ExonRegion	0	101.73	122.63	82.86	44.57	196.85	46.64	87.50
90	IG19	Intergenic	0	17.43	5.56	13.98	5.70	4.58	12.90	0.24
91	IG19_SR1	SilentIntergenicRegion	0	19.29	7.45	16.03	6.68	5.61	17.37	0.39
92	IG19_AR2	ActiveIntergenicRegion	0	30.87	6.28	21.22	9.77	4.99	12.67	0.00
93	IG19_SR2	SilentIntergenicRegion	0	18.11	3.07	13.10	5.03	3.59	6.52	0.00