Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AHCTF1	Gene	0	108.20	115.00	220.92	215.68	157.10	173.04	120.10
2	283201	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	326225	Transcript	0	0.00	0.00	0.00	0.53	0.00	0.00	0.00
4	366508	Transcript	0	1.12	9.76	4.62	14.38	3.30	8.28	1.82
5	361182	Transcript	0	0.34	1.28	1.23	1.25	0.81	2.18	0.94
6	391829	Transcript	0	0	0	0	0	0	0	0
7	IG18_AR2	ActiveIntergenicRegion	0	0.86	0.04	1.87	0.89	15.07	2.10	0.44
8	IG18_AR1	ActiveIntergenicRegion	0	1.08	1.76	1.81	1.41	20.05	1.62	0.70
9	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	I1_AR1	ActiveIntronRegion	0	9.86	23.39	12.40	50.59	11.31	29.59	11.50
11	ER2a	ExonRegion	0	0.00	0.00	0.00	1.07	0.00	0.00	0.00
12	E2_Ab	KnownBoundary	0	0.00	2.44	0.62	3.03	0.00	1.66	0.00
13	ER2b	ExonRegion	0	0.00	0.00	0.12	7.53	0.00	1.00	0.00
14	E2_Da	KnownBoundary	0	0.00	2.84	0.59	11.51	0.00	1.63	0.00
15	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER2c	ExonRegion	0	2.23	5.17	3.29	11.59	1.17	8.79	1.44
17	E2_Ac	KnownBoundary	0	5.82	10.67	6.16	16.82	1.18	13.21	2.21
18	ER2d	ExonRegion	0	2.08	10.37	6.42	21.28	1.65	9.21	0.88
19	E2b_E4a	KnownJunction	0	0.00	14.34	5.95	17.18	5.44	7.77	2.21
20	E3a_E4a	KnownJunction	0	0.00	0.00	0.50	0.00	0.00	0.00	0.00
21	ER3a	ExonRegion	0	0.68	2.56	1.96	2.49	1.62	4.36	1.87
22	ER4a	ExonRegion	0	20.34	48.59	42.53	90.42	12.01	58.42	28.97
23	E4a_E5a	KnownJunction	0	57.00	96.02	111.46	177.50	42.76	99.21	73.62
24	E4a_E6a	NovelJunction	1	4.64	11.85	7.49	27.52	0.00	6.27	0.62
25	ER5a	ExonRegion	0	27.21	36.78	62.40	80.81	24.86	39.02	42.57
26	E5a_E6a	KnownJunction	0	18.66	47.10	53.70	115.38	58.28	49.77	37.72
27	ER6a	ExonRegion	0	34.16	94.36	88.86	182.63	48.00	91.89	54.25
28	E6a_E7a	KnownJunction	0	55.96	97.78	144.68	199.28	0.85	92.22	66.23
29	ER7a	ExonRegion	0	102.14	136.95	204.56	289.18	108.65	150.24	105.99
30	E7a_E8a	KnownJunction	0	101.57	143.60	215.73	316.53	63.65	166.99	107.27
31	ER8a	ExonRegion	0	103.94	145.29	202.51	281.45	100.43	152.13	103.90
32	E8a_E9a	KnownJunction	0	98.60	123.03	173.49	246.53	116.90	120.63	105.92
33	ER9a	ExonRegion	0	79.55	113.78	164.41	230.67	110.27	129.98	109.40
34	E9a_E10a	KnownJunction	0	66.54	106.69	162.97	188.26	97.35	146.89	96.92
35	ER10a	ExonRegion	0	43.36	71.70	103.85	141.03	57.63	91.15	73.87
36	E10a_E11a	KnownJunction	0	24.30	41.19	60.61	97.42	37.41	75.31	48.30
37	ER11a	ExonRegion	0	38.14	21.97	74.96	46.45	52.74	39.45	43.96
38	E11a_E12a	KnownJunction	0	73.39	11.45	115.88	38.14	33.73	35.00	42.19
39	ER12a	ExonRegion	0	73.23	41.59	141.15	75.25	36.76	52.06	50.96
40	E12a_E13a	KnownJunction	0	122.04	83.46	251.74	142.42	83.68	79.65	84.37
41	ER13a	ExonRegion	0	76.45	72.93	175.68	144.21	35.22	83.61	72.02
42	E13a_E14a	KnownJunction	0	54.68	79.94	137.16	165.36	7.10	94.71	55.09
43	ER14a	ExonRegion	0	95.91	121.56	235.75	213.59	77.15	114.32	108.04
44	E14a_E15a	KnownJunction	0	84.30	139.97	209.28	231.79	107.89	141.88	109.45
45	ER15a	ExonRegion	0	95.42	147.24	277.50	242.75	119.99	170.95	130.48
46	E15a_E16a	KnownJunction	0	103.24	143.86	284.71	225.53	97.58	154.21	124.84
47	ER16a	ExonRegion	0	100.61	154.04	262.10	283.81	128.16	163.81	139.87
48	E16a_E17a	KnownJunction	0	97.07	164.09	255.82	277.44	131.17	166.48	134.04
49	ER17a	ExonRegion	0	98.10	157.10	271.50	283.14	152.90	157.45	145.81
50	E17a_E18a	KnownJunction	0	93.65	158.02	229.64	240.92	162.32	128.18	129.63
51	E17a_E19a	NovelJunction	0	3.82	5.04	2.67	9.81	5.37	1.47	1.39
52	ER18a	ExonRegion	0	90.65	163.58	234.90	255.91	150.98	135.67	141.29
53	E18a_E19a	KnownJunction	0	68.46	166.80	205.35	254.52	142.58	149.68	149.28
54	ER19a	ExonRegion	0	109.32	182.71	239.15	288.99	181.63	161.79	179.36
55	E19a_E20a	KnownJunction	0	119.60	160.68	251.78	277.44	177.74	133.52	190.71
56	ER20a	ExonRegion	0	97.32	175.44	253.72	318.85	158.69	165.84	165.31
57	E20a_E21a	KnownJunction	0	98.60	150.30	241.48	323.01	177.92	163.85	149.65
58	ER21a	ExonRegion	0	116.33	165.95	289.35	306.16	196.44	179.15	166.77
59	E21a_E22a	KnownJunction	0	124.36	179.12	295.24	272.13	208.70	169.13	170.50
60	ER22a	ExonRegion	0	138.13	158.42	311.03	284.68	178.72	174.17	156.97
61	E22a_E23a	KnownJunction	0	111.10	134.88	273.90	279.55	163.33	152.76	143.63
62	ER23a	ExonRegion	0	126.43	123.24	257.45	253.85	158.39	150.46	143.29
63	E23a_E24a	KnownJunction	0	93.11	112.10	239.04	221.47	131.68	163.93	145.88
64	ER24a	ExonRegion	0	105.52	125.35	260.29	244.39	157.97	167.45	155.53
65	E24a_E25a	KnownJunction	0	107.08	131.38	280.02	249.62	206.14	175.38	163.94
66	ER25a	ExonRegion	0	123.69	127.85	296.68	244.28	193.36	191.90	168.68
67	E25a_E26a	KnownJunction	0	122.94	103.12	278.64	221.69	199.91	197.38	160.68
68	E25a_E27a	NovelJunction	0	6.34	4.65	13.59	9.29	1.18	2.14	1.40
69	ER26a	ExonRegion	0	193.76	150.22	368.48	322.53	242.45	226.48	199.65
70	E26a_E27a	KnownJunction	0	197.69	192.70	377.94	387.70	185.81	294.29	172.81
71	ER27a	ExonRegion	0	199.12	178.91	391.03	339.30	237.01	236.80	211.79
72	E27a_E28a	KnownJunction	0	143.88	132.91	294.12	234.01	153.26	139.55	109.78
73	E28_Aa	NovelBoundary	1	75.71	4.20	126.00	4.42	0.00	5.74	3.55
74	ER28a	ExonRegion	0	103.92	99.06	261.78	169.70	141.36	125.91	126.07
75	E28a_E29a	KnownJunction	0	77.07	91.79	264.34	167.72	193.48	120.17	134.89
76	ER29a	ExonRegion	0	85.65	94.12	221.07	158.20	113.53	139.33	115.59
77	E29a_E30a	KnownJunction	0	110.25	92.97	198.01	193.59	110.40	157.21	97.90
78	ER30a	ExonRegion	0	126.49	128.84	243.29	237.66	143.40	192.34	126.36
79	E30a_E31a	KnownJunction	0	169.64	170.13	283.37	278.98	215.89	204.13	122.71
80	ER31a	ExonRegion	0	169.30	174.81	331.81	327.34	241.93	235.35	175.08
81	E31a_E32a	KnownJunction	0	129.60	150.64	346.20	305.75	224.17	212.79	186.24
82	ER32a	ExonRegion	0	108.73	136.91	274.47	286.92	201.43	222.94	162.81
83	E32a_E33a	KnownJunction	0	105.91	141.18	245.75	302.15	144.93	239.91	154.32
84	ER33a	ExonRegion	0	121.77	168.57	295.20	339.67	221.84	238.33	168.27
85	E33a_E34a	KnownJunction	0	125.99	176.89	286.10	282.51	191.32	215.79	128.57
86	ER34a	ExonRegion	0	112.91	151.97	261.02	299.83	193.80	198.81	144.61
87	E34a_E35a	KnownJunction	0	140.85	146.28	280.87	299.87	179.01	204.54	158.20
88	ER35a	ExonRegion	0	205.44	192.51	380.92	350.00	286.04	330.30	194.72
89	E35a_E36a	KnownJunction	0	85.42	130.25	221.39	252.73	226.96	236.08	117.73
90	E35a_E37a	NovelJunction	1	31.19	25.38	27.29	30.18	9.57	35.03	3.86
91	E35a_E38a	NovelJunction	1	27.76	38.38	27.50	40.15	4.38	35.78	1.95
92	ER36a	ExonRegion	0	105.68	120.23	254.10	245.63	283.81	312.59	160.19
93	E36a_E37a	KnownJunction	0	114.23	123.58	221.95	245.80	332.56	272.93	129.50
94	E36a_E38a	NovelJunction	0	10.51	8.04	9.10	11.03	3.02	24.41	0.00
95	ER37a	ExonRegion	0	186.25	166.86	298.00	320.71	295.77	422.88	184.06
96	E37a_E38a	KnownJunction	0	247.96	227.48	384.95	402.03	405.25	547.57	219.86
97	ER38a	ExonRegion	0	41.67	36.31	79.41	71.36	92.14	81.27	50.27
98	ER38b	ExonRegion	0	0.00	0.00	0.68	0.00	0.20	0.00	0.00