Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 LYST Gene 0 30.12 34.20 85.05 94.67 0.86 86.44 55.68 2 389793 Transcript 0 19.78 62.58 53.75 120.73 0.00 76.60 64.63 3 389794 Transcript 0 0.56 2.42 2.95 4.15 0.00 8.53 3.27 4 ER1a ExonRegion 0 7.70 46.44 21.52 76.72 0.00 45.64 28.62 5 E1a_E2a KnownJunction 0 20.14 99.73 48.53 166.99 0.00 92.67 61.94 6 E1b_E2b KnownJunction 1 2.47 10.35 6.90 13.00 0.00 20.39 14.23 7 ER1b ExonRegion 0 0.00 1.21 0.23 1.45 0.00 0.20 0.11 8 E2_Ab NovelBoundary 1 7.73 31.71 19.39 38.25 0.00 35.51 29.39 9 ER2a ExonRegion 0 16.80 93.54 44.80 140.19 0.00 96.50 63.03 10 ER2b ExonRegion 0 12.31 103.69 24.30 99.92 0.68 101.64 44.17 11 E2a_E3a KnownJunction 0 8.19 130.36 23.70 123.86 1.04 131.83 24.76 12 ER3a ExonRegion 0 28.76 149.06 68.02 174.17 1.78 143.85 70.00 13 E3a_E4a KnownJunction 0 19.43 45.74 54.55 77.16 0.00 76.08 22.93 14 I3_AR1 ActiveIntronRegion 0 4.11 7.83 3.32 2.87 0.00 2.87 5.11 15 I3_SR1 SilentIntronRegion 0 6.24 9.82 5.86 1.94 0.21 3.66 5.24 16 I3_AR2 ActiveIntronRegion 1 9.40 12.56 10.33 8.38 1.09 17.90 18.88 17 I3_SR2 SilentIntronRegion 1 4.96 8.88 5.20 5.36 0.00 9.38 15.30 18 I3_AR3 ActiveIntronRegion 1 7.27 14.39 6.75 12.74 0.07 10.78 25.41 19 ER4a ExonRegion 0 20.06 56.79 58.96 116.13 0.00 96.37 27.07 20 E4a_E5a KnownJunction 0 23.72 48.21 67.68 107.50 0.00 93.48 26.69 21 ER5a ExonRegion 0 26.09 29.62 75.04 74.95 0.23 50.28 35.40 22 E5a_E6a KnownJunction 0 45.10 20.02 107.69 99.51 2.12 58.40 40.40 23 ER6a ExonRegion 0 22.96 29.22 71.65 79.40 0.34 51.05 38.26 24 E6a_E7a KnownJunction 0 25.34 43.43 78.46 76.91 0.00 56.47 31.80 25 ER7a ExonRegion 0 34.14 34.21 88.77 77.70 0.50 58.86 45.77 26 E7a_E8a KnownJunction 0 28.61 36.60 102.52 93.27 0.00 58.50 44.36 27 ER8a ExonRegion 0 29.36 24.59 84.25 79.50 0.31 42.98 46.74 28 E8a_E9a KnownJunction 0 23.40 22.75 65.33 75.58 0.90 49.50 38.29 29 ER9a ExonRegion 0 21.25 20.97 77.87 67.78 0.34 46.53 37.07 30 E9a_E10a KnownJunction 1 26.67 11.61 93.64 52.12 0.00 20.98 23.70 31 ER10a ExonRegion 0 25.53 19.38 95.09 59.58 0.00 39.69 32.20 32 E10a_E11a KnownJunction 0 22.75 22.33 90.59 53.32 0.00 58.99 35.63 33 ER11a ExonRegion 1 29.83 27.05 90.06 62.67 0.00 53.35 29.84 34 E11a_E12a KnownJunction 0 25.84 25.01 77.63 54.94 0.00 44.65 35.30 35 ER12a ExonRegion 0 20.46 33.94 63.28 62.46 0.58 47.09 38.20 36 E12a_E13a KnownJunction 0 31.06 29.19 84.57 73.96 0.00 77.02 54.67 37 ER13a ExonRegion 0 31.74 45.18 88.89 83.27 0.28 87.10 50.18 38 E13a_E14a KnownJunction 0 24.07 47.66 78.79 90.32 0.00 88.14 44.11 39 ER14a ExonRegion 0 25.50 37.71 76.69 80.01 0.70 73.51 47.99 40 E14a_E15a KnownJunction 0 14.30 25.67 62.70 68.03 0.00 43.66 37.41 41 ER15a ExonRegion 0 16.42 21.43 64.03 57.64 0.46 51.02 45.51 42 E15a_E16a KnownJunction 0 14.22 13.82 55.91 37.03 2.35 28.03 30.38 43 ER16a ExonRegion 0 17.50 22.65 64.05 42.88 0.67 33.54 36.24 44 E16a_E17a KnownJunction 0 16.72 29.56 72.63 65.05 0.00 45.61 35.27 45 ER17a ExonRegion 0 20.76 22.62 81.31 71.66 0.54 63.82 45.13 46 E17a_E18a KnownJunction 0 17.91 20.15 86.29 81.90 0.00 64.88 43.77 47 ER18a ExonRegion 0 23.45 29.95 96.92 93.74 0.34 57.99 54.99 48 E18a_E19a KnownJunction 0 17.94 31.29 88.26 96.66 1.18 56.39 54.49 49 ER19a ExonRegion 0 22.57 31.78 77.55 85.92 0.12 69.91 62.31 50 E19a_E20a KnownJunction 0 21.43 29.11 59.90 87.69 0.00 60.35 61.25 51 E19b_E20b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER19b ExonRegion 0 0.00 0.00 1.35 0.31 0.00 0.00 0.34 53 ER20a ExonRegion 0 20.75 27.94 61.78 88.04 0.00 56.89 72.32 54 ER20b ExonRegion 0 31.84 23.85 89.70 76.40 0.00 69.38 72.77 55 E20a_E21a KnownJunction 0 39.96 31.71 102.37 76.91 0.00 94.58 61.83 56 E21_Aa NovelBoundary 1 11.20 0.00 29.14 0.00 0.00 0.00 0.89 57 ER21a ExonRegion 0 39.79 35.10 114.24 92.75 0.00 88.28 69.44 58 E21a_E22a KnownJunction 0 35.52 36.54 107.04 100.62 0.00 88.09 54.36 59 ER22a ExonRegion 0 42.57 36.42 115.12 135.34 0.00 97.56 68.96 60 E22a_E23a KnownJunction 0 40.42 36.73 96.76 159.54 0.00 84.58 67.56 61 ER23a ExonRegion 0 33.93 39.56 89.66 106.41 0.14 79.14 68.33 62 E23a_E24a KnownJunction 0 44.16 79.02 119.60 133.42 0.88 91.09 68.82 63 ER24a ExonRegion 0 49.81 61.06 123.76 110.73 0.43 70.36 77.51 64 E24a_E25a KnownJunction 0 47.38 62.89 113.27 114.13 0.00 56.41 55.72 65 ER25a ExonRegion 0 53.04 47.73 141.34 116.58 0.79 74.97 78.22 66 E25a_E26a KnownJunction 0 40.62 28.50 118.89 92.38 1.01 61.29 71.99 67 ER26a ExonRegion 0 31.15 38.06 97.31 84.06 0.86 73.63 74.58 68 E26a_E27a KnownJunction 1 16.61 35.41 83.09 75.34 0.00 71.21 68.39 69 ER27a ExonRegion 0 31.36 31.75 98.90 87.16 0.77 72.33 72.99 70 E27a_E28a KnownJunction 0 22.33 24.59 75.79 75.26 2.12 57.83 66.99 71 ER28a ExonRegion 0 36.37 36.41 102.36 94.10 0.49 81.85 65.80 72 E28a_E29a KnownJunction 1 13.80 28.48 120.73 90.89 0.00 68.66 66.60 73 I28_AR1 ActiveIntronRegion 1 19.54 8.44 1.96 2.19 0.00 4.08 1.12 74 ER29a ExonRegion 0 28.59 33.86 96.19 94.51 0.22 83.87 58.82 75 E29a_E30a KnownJunction 0 26.62 32.10 100.69 84.44 0.00 88.92 52.20 76 ER30a ExonRegion 0 23.46 27.81 93.19 69.66 0.46 80.90 48.70 77 E30a_E31a KnownJunction 0 28.06 31.13 104.90 70.46 0.00 83.99 49.74 78 ER31a ExonRegion 0 25.86 38.49 98.14 97.32 0.20 90.29 64.63 79 E31_Da NovelBoundary 0 0.00 12.22 2.60 4.28 0.00 3.06 1.59 80 E31a_E32a KnownJunction 0 19.16 31.45 68.76 74.61 0.00 74.69 41.25 81 ER32a ExonRegion 0 17.17 33.29 65.15 84.58 0.14 70.62 47.23 82 E32a_E33a KnownJunction 0 18.99 31.81 59.08 79.59 1.18 56.65 45.96 83 ER33a ExonRegion 0 33.65 25.75 75.05 80.92 0.22 59.74 47.05 84 E33a_E34a KnownJunction 0 37.22 22.49 76.61 91.76 0.00 67.64 47.69 85 ER34a ExonRegion 0 40.87 25.13 102.12 112.68 0.44 79.53 61.97 86 E34a_E35a KnownJunction 0 24.28 27.66 87.86 91.92 0.00 74.99 69.55 87 ER35a ExonRegion 0 30.96 21.60 92.96 103.40 0.37 77.78 75.41 88 E35a_E36a KnownJunction 0 39.42 24.77 91.52 122.78 1.15 83.59 89.46 89 ER36a ExonRegion 0 28.27 26.11 78.33 99.80 0.72 76.00 77.43 90 E36a_E37a KnownJunction 0 20.61 38.96 66.97 94.87 0.00 105.83 58.10 91 ER37a ExonRegion 0 20.65 35.94 76.56 85.32 0.24 94.48 66.64 92 E37_Da NovelBoundary 1 9.20 2.86 28.51 0.00 0.00 0.00 1.32 93 E37a_E38a KnownJunction 0 20.73 27.61 68.73 76.10 1.13 59.87 62.17 94 E37a_E39a NovelJunction 1 1.82 1.55 5.27 10.76 0.00 19.19 0.89 95 ER38a ExonRegion 0 32.37 31.22 93.03 85.37 0.94 78.57 78.61 96 E38a_E39a KnownJunction 0 44.68 31.84 101.20 79.08 1.15 86.64 78.88 97 ER39a ExonRegion 0 49.29 31.14 111.63 116.43 1.07 111.60 85.07 98 E39a_E40a KnownJunction 0 48.32 26.48 124.85 143.61 1.18 119.45 99.22 99 ER40a ExonRegion 0 33.54 28.52 94.50 104.12 0.40 95.93 84.62 100 E40a_E41a KnownJunction 0 18.86 30.00 66.66 82.68 0.00 82.46 66.17 101 ER41a ExonRegion 1 19.80 27.69 79.82 92.11 0.62 79.32 77.44 102 E41a_E42a KnownJunction 0 24.28 28.92 90.52 86.83 0.00 100.87 83.77 103 ER42a ExonRegion 0 20.88 23.44 66.74 82.30 0.12 87.56 62.15 104 E42a_E43a KnownJunction 1 13.15 21.67 68.32 51.93 1.11 69.09 59.70 105 I42_AR1 ActiveIntronRegion 0 0.74 3.06 7.33 19.39 0.69 14.79 3.10 106 I42_SR2 SilentIntronRegion 0 3.73 8.31 9.14 34.02 0.00 29.48 6.36 107 ER43a ExonRegion 0 20.51 24.14 66.74 80.94 0.74 86.85 52.89 108 E43a_E44a KnownJunction 0 19.66 26.85 59.31 85.47 0.00 103.26 50.72 109 ER44a ExonRegion 0 17.78 36.08 61.49 87.83 0.57 102.14 46.23 110 E44a_E45a KnownJunction 0 19.68 41.35 68.58 102.03 0.00 87.66 46.92 111 ER45a ExonRegion 0 33.25 35.20 74.24 118.17 0.39 101.91 49.81 112 E45a_E46a KnownJunction 0 56.90 42.98 92.62 134.26 0.92 139.68 53.18 113 ER46a ExonRegion 0 53.90 41.72 100.31 152.41 0.97 150.07 58.47 114 E46a_E47a KnownJunction 0 39.87 31.53 73.16 130.93 1.13 148.36 65.67 115 ER47a ExonRegion 0 33.45 38.70 79.38 127.85 1.00 137.17 79.14 116 E47a_E48a KnownJunction 0 28.81 36.52 70.77 128.95 0.00 122.37 72.19 117 I47 Intron 0 0.45 0.36 0.78 0.12 18.46 1.12 3.01 118 I47_SR1 SilentIntronRegion 0 0.45 0.36 0.79 0.12 18.49 1.12 3.01 119 E48_Aa NovelBoundary 0 0.00 1.58 1.49 0.00 19.57 0.00 1.61 120 ER48a ExonRegion 0 29.32 38.69 76.07 122.66 11.52 131.16 85.93 121 E48_Da NovelBoundary 0 2.07 1.05 0.80 1.49 17.13 0.00 0.82 122 E48a_E49a KnownJunction 0 27.64 30.84 86.87 141.06 0.00 113.58 71.77 123 I48 Intron 0 0.46 0.61 0.65 0.35 13.64 0.47 2.99 124 I48_SR1 SilentIntronRegion 0 0.46 0.61 0.65 0.35 13.65 0.47 2.99 125 E49_Aa NovelBoundary 0 1.02 0.00 0.70 2.71 9.80 0.00 0.63 126 ER49a ExonRegion 0 32.66 40.73 90.91 156.32 8.32 158.07 78.98 127 E49_Da NovelBoundary 0 0.00 1.63 0.00 0.00 13.81 2.95 0.66 128 E49a_E50a KnownJunction 0 28.96 37.80 71.82 155.88 0.00 178.49 72.59 129 I49 Intron 0 0.00 0.00 0.18 0.00 19.83 0.64 0.35 130 I49_SR1 SilentIntronRegion 0 0.00 0.00 0.18 0.00 19.95 0.64 0.35 131 E50_Aa NovelBoundary 0 0.00 0.00 0.89 0.00 22.98 0.00 1.78 132 ER50a ExonRegion 0 22.84 36.31 79.64 160.06 18.69 172.11 65.50 133 E50_Da NovelBoundary 0 0.00 0.00 1.29 1.06 32.16 6.08 1.30 134 E50a_E51a KnownJunction 0 19.33 37.25 75.03 131.72 0.00 162.70 51.46 135 I50_SR1 SilentIntronRegion 0 0.63 0.87 0.70 0.22 23.11 0.51 2.83 136 ER51a ExonRegion 0 19.29 36.48 67.64 146.63 1.10 143.75 59.94 137 E51a_E52a KnownJunction 0 32.88 40.06 99.39 152.33 2.28 142.25 65.82 138 ER52a ExonRegion 0 38.86 56.31 107.51 160.84 1.16 181.33 85.95 139 E52a_E53a KnownJunction 0 40.44 67.39 91.08 190.07 0.90 200.68 91.89 140 ER53a ExonRegion 1 41.32 29.27 101.44 113.24 1.36 151.44 70.31 141 ER53b ExonRegion 1 0.34 0.54 6.25 5.96 0.00 22.07 1.65