Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RNPEP	Gene	0	138.77	78.52	138.88	59.42	228.84	55.97	326.53
2	295640	Transcript	0	99.03	69.84	132.68	38.50	197.78	30.22	284.13
3	367286	Transcript	0	12.56	2.79	7.82	3.98	11.01	2.64	6.34
4	ER1a	ExonRegion	0	0.72	0.16	0.36	3.74	5.72	2.13	1.35
5	ER1b	ExonRegion	0	15.60	23.87	13.79	20.68	24.72	18.14	42.95
6	E1a_E2a	KnownJunction	0	53.52	59.45	61.71	44.00	75.82	40.98	173.25
7	ER2a	ExonRegion	0	91.51	74.53	109.13	57.41	137.62	58.13	273.39
8	E2a_E3a	KnownJunction	0	77.31	80.44	115.87	62.23	130.66	40.98	253.25
9	E2a_E4a	NovelJunction	0	4.81	6.75	6.16	13.79	9.20	7.66	8.40
10	ER3a	ExonRegion	0	111.43	93.50	147.93	63.70	217.11	49.90	376.86
11	E3_Da	NovelBoundary	1	32.21	11.03	30.05	24.14	26.42	3.70	24.46
12	E3a_E4a	KnownJunction	0	99.81	85.62	133.83	49.25	191.43	31.97	298.84
13	E3a_E5a	KnownJunction	0	0.00	1.47	2.14	6.23	3.14	1.13	0.69
14	E4_Aa	NovelBoundary	0	25.37	18.81	13.74	9.89	8.14	17.58	20.06
15	ER4a	ExonRegion	0	142.47	103.66	179.30	53.72	274.45	50.79	374.02
16	E4_Da	NovelBoundary	0	35.42	34.84	19.13	27.96	31.77	21.33	16.55
17	E4a_E5a	KnownJunction	0	153.15	89.93	217.24	47.30	319.54	35.99	462.33
18	E4a_E6a	NovelJunction	0	3.14	2.55	5.81	5.91	4.20	10.96	5.96
19	I4	Intron	1	22.31	18.05	8.82	7.36	12.13	5.22	8.05
20	I4_AR1	ActiveIntronRegion	0	15.00	17.05	9.05	13.69	10.38	7.45	4.34
21	I4_SR2	SilentIntronRegion	1	25.16	18.49	8.76	4.99	12.84	4.40	9.48
22	ER5a	ExonRegion	0	173.58	131.26	201.80	72.86	336.44	68.33	530.80
23	E5a_E6a	KnownJunction	0	104.23	116.12	127.31	59.00	314.12	49.18	392.38
24	I5_AR1	ActiveIntronRegion	1	31.86	15.73	8.60	4.33	18.17	0.71	9.03
25	E6_Aa	NovelBoundary	1	41.57	20.65	8.72	1.68	19.43	0.00	9.34
26	ER6a	ExonRegion	0	170.03	102.45	173.80	66.18	355.78	68.51	489.30
27	E6_Da	NovelBoundary	1	55.39	14.66	16.91	12.41	31.28	9.35	18.60
28	E6a_E7a	KnownJunction	0	179.85	83.83	208.86	76.45	596.45	70.70	584.26
29	E6a_E9a	NovelJunction	0	0.00	1.13	0.53	1.54	3.25	7.91	0.00
30	I6_AR1	ActiveIntronRegion	1	54.00	22.16	18.88	10.57	20.81	12.54	9.31
31	E7_Aa	NovelBoundary	1	91.03	13.79	86.62	7.88	16.92	4.37	11.26
32	ER7a	ExonRegion	0	322.00	101.18	313.45	79.66	449.15	57.04	590.47
33	E7a_E8a	KnownJunction	0	242.86	109.18	280.03	77.81	234.63	72.92	483.94
34	ER8a	ExonRegion	0	292.84	106.33	300.05	87.42	325.79	66.52	549.35
35	E8a_E9a	KnownJunction	0	509.11	112.07	491.16	94.30	743.11	67.75	794.36
36	ER9a	ExonRegion	0	213.28	88.31	210.68	70.16	301.26	76.86	396.16
37	E9a_E10a	KnownJunction	0	190.40	89.87	193.47	77.91	278.62	102.19	381.50
38	ER10a	ExonRegion	0	201.68	98.29	183.78	94.37	376.77	88.58	490.23
39	E10a_E11a	KnownJunction	0	187.64	73.24	152.04	91.84	406.84	94.36	450.77
40	ER11a	ExonRegion	0	131.15	73.22	105.60	64.71	223.09	64.90	281.76
41	ER11b	ExonRegion	0	25.12	4.11	13.50	1.73	18.88	4.15	11.99
42	IG6	Intergenic	0	13.33	6.15	1.44	1.13	2.89	2.87	1.58
43	IG6_SR2	SilentIntergenicRegion	0	15.00	3.06	0.81	0.00	4.27	0.00	0.84
44	IG6_SR3	SilentIntergenicRegion	0	13.09	0.80	1.16	1.59	1.78	0.80	1.76
45	IG6_SR5	SilentIntergenicRegion	0	15.16	6.76	1.86	0.47	2.38	4.19	1.16
46	IG6_AR4	ActiveIntergenicRegion	0	13.52	8.10	1.44	2.11	3.13	3.87	2.64
47	IG6_AR5	ActiveIntergenicRegion	0	14.45	11.97	1.22	1.25	7.82	3.19	0.67
48	IG6_AR6	ActiveIntergenicRegion	0	15.75	12.15	0.34	1.25	5.06	1.23	0.67