Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NFASC	Gene	0	14.72	9.07	71.86	403.63	12.54	4.85	20.33
2	367169	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	403080	Transcript	1	0.61	9.51	8.27	78.82	2.51	0.89	10.23
4	360049	Transcript	1	13.45	2.23	34.99	373.23	14.78	3.62	9.39
5	367171	Transcript	0	0.55	2.05	3.36	29.81	0.27	0.56	1.99
6	367173	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	367170	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	295776	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	367172	Transcript	0	0	0	0	0	0	0	0
10	338515	Transcript	1	0.00	0.00	3.88	23.62	0.00	0.00	0.86
11	339876	Transcript	0	0	0	0	0	0	0	0
12	338586	Transcript	0	0.00	0.00	0.00	2.79	0.00	0.00	0.00
13	404977	Transcript	0	0.00	1.14	1.02	1.60	0.00	0.00	0.00
14	404076	Transcript	0	0	0	0	0	0	0	0
15	401399	Transcript	1	3.07	0.00	5.42	19.95	1.62	0.00	1.35
16	404907	Transcript	0	0	0	0	0	0	0	0
17	ER1a	ExonRegion	0	0.86	4.36	2.97	133.58	1.52	0.31	3.30
18	E1a_E3a	KnownJunction	0	0.00	2.29	6.29	131.85	1.11	1.42	5.89
19	E1a_E4a	NovelJunction	1	0.00	2.86	1.70	18.58	0.00	0.00	1.82
20	ER2a	ExonRegion	0	0.00	1.14	1.02	1.60	0.00	0.00	0.00
21	E2_Ab	KnownBoundary	0	0.00	0.00	3.91	3.93	0.00	0.00	0.00
22	ER2b	ExonRegion	0	0.26	0.00	2.86	4.13	0.38	0.00	0.00
23	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER3a	ExonRegion	1	3.38	12.61	25.75	255.12	4.15	3.89	26.61
25	E3a_E4a	KnownJunction	1	9.60	24.35	59.46	405.88	3.20	3.22	34.52
26	ER4a	ExonRegion	1	7.51	24.42	59.43	485.36	8.10	5.97	33.74
27	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E4a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	E4a_E8a	KnownJunction	1	0.77	3.49	22.82	139.06	2.93	1.55	17.30
31	E4a_E9b	KnownJunction	1	8.83	27.14	34.66	428.58	1.18	4.31	5.32
32	E5a_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	E6a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	E7a_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E8a_E9b	KnownJunction	1	1.84	13.40	27.84	157.94	4.22	9.54	25.27
39	ER8a	ExonRegion	1	2.18	13.57	32.89	229.86	3.91	7.36	35.04
40	ER9a	ExonRegion	0	2.88	10.33	17.44	169.28	1.62	3.37	11.13
41	ER9b	ExonRegion	1	10.00	33.75	80.68	677.24	12.46	11.47	49.90
42	E9a_E10a	KnownJunction	1	13.82	28.37	98.91	602.40	7.47	14.50	42.38
43	ER10a	ExonRegion	1	9.52	26.17	76.65	558.44	9.65	14.24	38.05
44	E10a_E11a	KnownJunction	1	16.86	23.28	110.75	545.56	24.67	20.05	51.74
45	ER11a	ExonRegion	1	18.45	26.62	115.17	744.58	13.95	10.65	62.75
46	E11a_E12a	KnownJunction	1	13.67	28.06	72.76	598.60	7.61	4.61	43.05
47	ER12a	ExonRegion	1	14.68	30.35	98.56	750.77	14.52	12.98	56.89
48	E12a_E13a	KnownJunction	0	0.00	0.00	0.66	9.51	0.00	0.00	0.00
49	E12a_E14a	KnownJunction	1	10.95	35.52	58.07	584.60	20.22	11.77	42.49
50	ER13a	ExonRegion	0	0.00	0.00	1.05	7.60	0.00	0.00	0.00
51	E13a_E14a	KnownJunction	0	0.00	0.00	1.49	4.63	0.00	0.00	0.00
52	ER14a	ExonRegion	1	11.41	28.49	79.54	534.55	18.24	9.90	50.21
53	E14a_E15a	KnownJunction	0	16.91	22.44	86.29	458.54	12.08	12.89	42.92
54	ER15a	ExonRegion	0	17.43	24.46	104.23	632.59	19.67	10.15	49.22
55	E15a_E16a	KnownJunction	1	19.04	27.87	124.48	701.01	35.89	14.18	62.59
56	ER16a	ExonRegion	0	19.34	25.08	112.25	705.90	25.59	9.97	54.51
57	E16a_E17a	KnownJunction	1	18.66	29.82	128.08	745.49	31.51	10.02	68.42
58	ER17a	ExonRegion	0	24.20	26.78	121.73	755.71	32.65	12.75	63.25
59	E17a_E18a	KnownJunction	1	18.44	22.72	108.60	828.15	29.42	14.93	57.31
60	ER18a	ExonRegion	0	26.83	32.99	117.80	743.89	26.85	14.16	58.33
61	E18a_E19a	KnownJunction	0	26.27	30.55	98.19	640.68	28.65	8.07	58.04
62	ER19a	ExonRegion	0	26.45	36.82	113.67	739.74	27.13	12.94	60.77
63	E19a_E20a	KnownJunction	0	21.50	29.45	85.16	628.73	14.89	13.29	33.65
64	ER20a	ExonRegion	0	19.55	22.75	74.25	652.15	18.11	9.20	41.40
65	E20a_E21a	KnownJunction	0	16.04	30.37	63.32	636.78	16.00	5.44	41.39
66	ER21a	ExonRegion	0	14.93	24.48	64.54	605.09	15.82	8.19	40.57
67	E21_Da	KnownBoundary	1	2.05	20.41	7.83	135.81	8.00	0.00	16.98
68	E21a_E22a	KnownJunction	0	11.95	4.70	45.76	329.27	12.79	8.31	20.21
69	E21a_E23a	KnownJunction	0	0.00	0.00	1.49	33.92	0.00	3.19	0.00
70	E21a_E24a	NovelJunction	1	0.00	0.00	0.52	12.81	0.00	0.00	0.00
71	E21_Db	KnownBoundary	1	0.00	14.61	8.06	79.54	4.43	0.00	17.24
72	ER21b	ExonRegion	1	1.54	19.98	9.53	138.58	6.70	0.00	22.96
73	ER21c	ExonRegion	1	0.61	9.51	8.27	78.82	2.51	0.89	10.23
74	ER22a	ExonRegion	0	10.62	5.75	55.55	370.76	7.79	8.75	17.13
75	E22a_E23a	KnownJunction	0	7.69	4.83	45.34	286.38	5.33	5.90	14.79
76	ER23a	ExonRegion	0	13.51	10.67	54.30	385.98	11.34	5.63	21.69
77	E23a_E24a	KnownJunction	0	9.65	11.80	65.59	425.41	15.56	8.98	20.54
78	ER24a	ExonRegion	0	8.33	12.08	55.53	458.42	8.94	5.32	18.40
79	E24a_E25a	KnownJunction	0	9.53	7.91	46.39	379.52	13.56	3.16	16.61
80	ER25a	ExonRegion	0	16.43	11.62	63.01	433.84	10.33	6.39	17.02
81	E25a_E26a	KnownJunction	0	18.58	13.35	67.50	462.28	6.04	6.27	17.74
82	ER26a	ExonRegion	0	16.65	6.32	68.73	452.15	10.36	5.25	21.89
83	E26a_E27a	KnownJunction	0	4.91	0.00	42.75	84.25	0.88	3.22	6.64
84	E26a_E28a	NovelJunction	0	0.75	0.00	2.44	32.46	0.00	0.00	0.00
85	E26a_E29a	KnownJunction	0	13.55	4.68	26.46	377.60	8.32	3.64	23.90
86	ER27a	ExonRegion	0	3.24	2.39	22.23	63.19	0.65	0.29	4.02
87	E27a_E28a	KnownJunction	0	0.00	0.00	0.53	1.38	0.00	0.00	0.00
88	I27	Intron	1	1.92	1.16	24.15	56.45	0.59	0.06	1.72
89	I27_AR2	ActiveIntronRegion	0	2.20	1.52	21.78	62.52	0.58	0.00	1.40
90	I27_SR2	SilentIntronRegion	1	2.43	1.48	32.57	67.39	0.54	0.00	2.54
91	I27_AR3	ActiveIntronRegion	1	2.02	1.90	36.47	60.19	2.11	0.00	3.37
92	I27_SR3	SilentIntronRegion	1	1.00	1.04	24.29	57.59	0.94	0.35	1.35
93	ER28a	ExonRegion	0	2.03	0.90	14.71	85.99	0.60	0.47	0.00
94	E28a_E29a	KnownJunction	1	4.61	0.00	21.27	79.78	0.00	0.00	0.00
95	I28	Intron	1	2.25	0.55	15.75	46.33	0.60	0.64	0.74
96	I28_AR2	ActiveIntronRegion	1	2.75	0.00	20.63	67.86	0.81	1.23	0.59
97	I28_AR3	ActiveIntronRegion	0	3.62	0.00	20.61	72.68	1.62	1.23	1.35
98	I28_SR1	SilentIntronRegion	0	2.91	0.88	20.70	53.92	0.80	1.13	1.10
99	I28_AR4	ActiveIntronRegion	1	2.28	0.61	15.82	38.54	0.62	0.28	0.42
100	ER29a	ExonRegion	0	20.00	8.01	59.53	532.23	14.00	6.94	19.13
101	E29a_E30a	KnownJunction	1	28.89	6.09	66.20	615.27	19.99	13.86	24.18
102	ER30a	ExonRegion	0	17.22	8.69	63.41	570.25	14.98	7.42	24.78
103	E30_Da	KnownBoundary	0	0.92	1.50	5.03	18.10	0.00	0.00	1.58
104	E30a_E33a	NovelJunction	1	1.03	1.63	3.72	22.62	0.00	0.00	1.45
105	E30a_E34a	NovelJunction	1	0.00	0.00	5.27	15.74	1.01	0.00	1.32
106	E30a_E35a	KnownJunction	0	0.00	0.00	0.00	2.79	0.00	0.00	0.00
107	E30a_E37a	KnownJunction	1	13.45	2.23	34.99	373.23	14.78	3.62	9.39
108	E30_Db	KnownBoundary	0	0.00	0.00	4.27	10.81	0.00	0.00	0.00
109	E30b_E36a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
110	ER30b	ExonRegion	0	0.77	2.43	5.42	21.20	0.00	0.00	1.35
111	ER30c	ExonRegion	0	0.43	1.96	2.69	9.59	0.00	0.00	0.81
112	E30c_E33b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
113	I30_SR1	SilentIntronRegion	0	2.82	2.41	18.71	63.65	1.90	0.40	2.15
114	E31a_E33a	KnownJunction	1	0.00	0.00	3.95	17.93	0.00	0.00	9.70
115	E31a_E37a	KnownJunction	1	0.00	0.00	0.89	22.51	0.00	0.00	0.00
116	ER31a	ExonRegion	1	0.15	0.00	5.33	41.07	0.38	0.16	11.24
117	E32a_E33a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
118	E32a_E34a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
119	E32a_E37a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
120	ER32a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
121	ER33a	ExonRegion	0	1.24	0.05	8.18	41.82	2.18	0.00	6.49
122	ER33b	ExonRegion	0	2.05	2.18	7.75	93.28	0.95	1.29	7.90
123	E33a_E34a	KnownJunction	1	0.67	0.00	4.86	14.39	1.18	3.32	3.90
124	E33a_E37a	KnownJunction	1	0.00	0.00	3.88	23.62	0.00	0.00	0.86
125	I33	Intron	0	4.09	1.03	20.64	41.27	1.53	0.63	2.55
126	I33_AR2	ActiveIntronRegion	0	6.26	1.81	33.25	61.15	2.24	0.15	4.37
127	I33_SR2	SilentIntronRegion	0	7.96	1.29	37.01	64.28	0.98	0.71	3.74
128	I33_AR3	ActiveIntronRegion	0	6.15	1.08	28.86	36.99	1.74	0.49	2.24
129	I33_SR3	SilentIntronRegion	0	4.53	0.70	20.48	40.78	1.97	0.87	2.22
130	ER34a	ExonRegion	0	5.41	1.58	20.99	53.92	0.91	0.86	6.84
131	E34a_E35a	KnownJunction	0	4.12	0.00	14.47	36.52	0.00	0.00	6.59
132	E34a_E37a	NovelJunction	1	0.00	0.00	0.89	12.06	0.00	2.95	0.00
133	I34	Intron	0	2.37	1.27	15.67	43.44	1.07	0.36	1.65
134	I34_SR1	SilentIntronRegion	0	2.38	1.27	15.69	43.51	1.07	0.36	1.65
135	ER35a	ExonRegion	0	5.95	0.09	24.94	72.54	0.81	2.40	7.66
136	E35a_E37a	KnownJunction	1	3.14	1.10	15.71	39.28	0.00	0.00	6.22
137	I35_AR6	ActiveIntronRegion	0	2.92	0.77	18.24	38.18	1.58	0.45	1.62
138	E36a_E37a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
139	ER36a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
140	ER37a	ExonRegion	1	14.29	4.22	61.98	475.16	11.96	3.81	23.37
141	E37a_E38a	KnownJunction	1	16.57	3.18	46.83	448.66	13.92	2.20	14.12
142	E37a_E39a	NovelJunction	1	0.00	0.00	0.00	18.31	0.00	1.31	0.00
143	ER38a	ExonRegion	0	14.59	6.75	69.04	520.25	19.48	3.80	23.45
144	E38a_E39a	KnownJunction	1	12.32	4.18	73.82	546.59	16.64	4.42	27.95
145	ER39a	ExonRegion	0	17.22	6.34	74.50	454.73	17.51	3.67	18.72
146	E39_Da	KnownBoundary	1	8.85	3.10	91.71	412.54	14.27	2.49	11.92
147	ER39b	ExonRegion	0	18.09	4.80	89.61	392.38	12.67	4.19	13.98
148	ER39c	ExonRegion	0	3.07	0.00	5.42	19.95	1.62	0.00	1.35