Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TNNT2	Gene	0	4.90	10.95	11.26	50.83	30.62	1.38	52.66
2	367322	Transcript	0	0.00	0.49	0.00	4.99	4.86	0.00	1.21
3	367320	Transcript	0	0.00	0.00	1.58	9.51	0.00	1.37	4.01
4	367319	Transcript	0	0	0	0	0	0	0	0
5	367318	Transcript	0	0	0	0	0	0	0	0
6	360372	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	367317	Transcript	0	0	0	0	0	0	0	0
8	367315	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	357848	Transcript	0	0	0	0	0	0	0	0
10	236918	Transcript	0	0.00	0.61	0.00	0.83	1.08	0.00	1.24
11	IG43	Intergenic	0	7.61	9.22	13.24	34.66	1.58	0.50	45.97
12	IG43_AR3	ActiveIntergenicRegion	0	8.58	8.95	14.13	33.03	1.38	0.42	36.54
13	IG43_SR2	SilentIntergenicRegion	0	8.86	9.58	14.16	36.81	2.61	0.00	35.20
14	IG43_AR2	ActiveIntergenicRegion	0	8.39	6.16	14.34	28.93	1.01	0.87	36.17
15	IG43_SR1	SilentIntergenicRegion	0	7.13	10.57	13.06	37.91	1.47	0.57	56.45
16	ER1a	ExonRegion	0	0.00	0.49	0.00	4.99	4.86	0.00	1.21
17	ER1b	ExonRegion	0	0.00	2.30	0.37	17.33	19.37	0.94	2.54
18	E1a_E2a	KnownJunction	0	0.87	4.44	3.61	28.61	17.73	1.61	4.31
19	I1	Intron	1	9.32	4.99	5.57	6.71	2.21	0.54	55.73
20	I1_AR1	ActiveIntronRegion	1	6.90	5.01	3.17	5.62	1.59	0.94	33.50
21	I1_SR1	SilentIntronRegion	1	11.41	5.52	7.32	6.93	2.16	0.54	59.59
22	I1_AR2	ActiveIntronRegion	1	6.92	4.21	3.66	6.71	2.47	0.44	56.40
23	E2_Aa	NovelBoundary	1	10.43	4.33	2.26	6.58	1.18	0.00	34.54
24	E2_Ab	NovelBoundary	1	3.67	3.26	3.71	29.01	11.96	2.81	34.32
25	ER2a	ExonRegion	0	0.00	3.73	1.54	31.34	17.60	1.23	6.61
26	ER2b	ExonRegion	0	0.00	3.86	5.79	38.53	10.18	0.98	10.83
27	E2_Da	NovelBoundary	1	5.64	2.23	0.00	10.78	1.15	1.31	23.23
28	E3a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	I3	Intron	1	3.61	1.72	0.71	0.38	0.17	0.12	16.76
31	I3_SR1	SilentIntronRegion	1	3.62	1.72	0.71	0.38	0.17	0.12	16.80
32	ER4a	ExonRegion	0	0.00	4.31	8.81	36.16	8.83	0.00	14.17
33	I4	Intron	1	1.88	2.69	1.34	2.71	0.40	0.00	17.74
34	I4_AR1	ActiveIntronRegion	1	2.03	3.03	1.49	3.03	0.45	0.00	19.56
35	E5a_E6b	KnownJunction	0	0.00	0.00	0.00	5.88	7.33	0.00	6.06
36	E5a_E9a	KnownJunction	0	0.00	4.12	12.19	33.32	3.27	1.23	38.80
37	ER5a	ExonRegion	0	0.00	7.69	9.93	34.33	8.96	0.00	22.13
38	I5	Intron	0	7.09	3.12	3.91	4.50	2.66	0.06	19.18
39	I5_SR1	SilentIntronRegion	0	7.40	3.16	4.09	4.72	2.79	0.06	20.10
40	E6_Aa	NovelBoundary	1	0.88	1.63	1.44	2.28	4.33	1.05	17.36
41	E6a_E9a	KnownJunction	0	0.90	5.96	0.00	2.98	7.54	0.00	8.33
42	ER6a	ExonRegion	0	0.00	1.82	0.00	2.49	3.24	0.00	3.71
43	ER6b	ExonRegion	0	0.61	4.40	0.00	3.87	7.18	0.00	6.82
44	I6	Intron	1	4.70	5.73	1.71	3.10	2.87	0.23	19.84
45	I6_AR1	ActiveIntronRegion	1	3.58	5.22	0.84	3.07	2.03	0.37	12.76
46	I6_AR2	ActiveIntronRegion	1	2.31	2.43	0.68	1.25	2.43	1.23	12.75
47	I6_SR2	SilentIntronRegion	1	6.17	7.32	2.14	3.56	3.55	0.05	25.74
48	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	E8a_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	ER9a	ExonRegion	0	0.77	8.50	9.48	28.68	12.96	0.41	24.74
53	ER9b	ExonRegion	0	3.77	14.75	12.52	46.12	17.20	1.23	48.91
54	E9a_E10a	KnownJunction	0	6.14	11.38	11.25	49.31	20.10	1.15	57.14
55	E9a_E10b	KnownJunction	0	0.00	0.00	1.32	5.12	0.00	0.00	5.90
56	ER10a	ExonRegion	0	6.15	13.36	11.68	60.48	27.33	1.23	61.73
57	ER10b	ExonRegion	0	5.91	11.54	10.88	64.88	38.85	0.31	64.99
58	E10a_E11a	KnownJunction	1	3.87	3.23	8.16	42.48	43.20	0.00	47.82
59	E10a_E12a	NovelJunction	0	0.00	0.00	0.00	11.62	0.00	0.00	0.00
60	ER11a	ExonRegion	0	2.53	11.72	8.87	52.70	60.21	0.40	55.87
61	E11a_E12a	KnownJunction	0	1.03	11.56	6.81	26.90	73.22	1.13	41.32
62	I11	Intron	0	4.07	1.61	3.40	3.52	1.54	0.12	21.38
63	I11_AR1	ActiveIntronRegion	0	4.08	1.61	3.41	3.53	1.55	0.12	21.42
64	E12_Aa	NovelBoundary	0	10.50	10.88	8.41	3.31	2.28	0.00	52.25
65	ER12a	ExonRegion	0	3.57	14.78	13.99	46.73	39.71	1.37	61.99
66	E12a_E13a	KnownJunction	0	3.96	10.82	11.93	48.14	25.98	1.02	63.29
67	E12a_E14a	KnownJunction	0	0.00	0.00	1.58	9.51	0.00	1.37	4.01
68	I12	Intron	0	2.37	1.22	2.60	0.94	0.27	0.00	10.96
69	I12_SR1	SilentIntronRegion	0	2.38	1.23	2.62	0.95	0.27	0.00	11.02
70	ER13a	ExonRegion	0	5.61	9.52	14.13	60.27	32.30	0.76	60.26
71	E13_Da	NovelBoundary	0	7.34	9.54	4.90	13.60	0.00	0.00	19.78
72	E13a_E14a	KnownJunction	0	5.92	5.15	5.17	48.49	34.33	0.00	43.01
73	I13	Intron	0	4.31	3.50	2.40	5.48	0.67	0.00	12.39
74	I13_SR1	SilentIntronRegion	0	4.32	3.52	2.41	5.50	0.68	0.00	12.43
75	ER14a	ExonRegion	1	2.24	6.37	10.13	66.03	36.09	2.86	52.17
76	E14a_E15a	KnownJunction	0	0.73	13.40	16.28	57.03	37.44	2.81	58.73
77	I14	Intron	0	5.55	3.17	2.90	4.02	0.50	0.19	13.65
78	I14_AR2	ActiveIntronRegion	0	7.19	4.29	3.92	5.18	0.67	0.26	17.37
79	E15_Aa	NovelBoundary	0	9.55	9.72	3.51	6.94	0.00	0.00	24.06
80	ER15a	ExonRegion	0	9.89	22.44	18.50	80.45	60.10	1.68	84.64
81	E15_Da	NovelBoundary	1	6.24	3.78	3.02	2.06	2.26	0.00	28.89
82	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	1.60	0.00	0.00	0.89
83	E15a_E17a	KnownJunction	0	10.50	21.99	20.52	84.77	60.63	1.66	78.98
84	I15	Intron	1	5.45	4.19	3.26	2.87	1.36	0.25	33.60
85	I15_SR2	SilentIntronRegion	1	5.60	4.30	3.30	2.94	1.40	0.26	34.38
86	E16a_E17a	KnownJunction	0	0.85	0.00	0.00	0.00	0.90	0.00	0.00
87	ER16a	ExonRegion	0	0.77	0.00	0.00	1.66	0.27	0.00	0.97
88	I16	Intron	0	3.51	2.54	1.52	1.45	0.63	0.00	13.60
89	I16_SR1	SilentIntronRegion	0	3.14	1.31	1.14	2.00	0.00	0.00	12.11
90	I16_AR1	ActiveIntronRegion	0	3.65	2.91	1.63	1.30	0.81	0.00	14.15
91	E17_Aa	NovelBoundary	0	9.20	4.20	8.39	2.22	3.18	1.39	26.79
92	ER17a	ExonRegion	0	10.34	20.44	22.50	86.21	49.08	4.58	92.31
93	E17a_E18a	KnownJunction	0	11.75	19.83	20.33	97.74	41.15	3.32	95.95
94	ER18a	ExonRegion	0	9.96	20.51	21.38	77.46	46.61	1.48	97.85
95	E18a_E19a	KnownJunction	0	7.58	18.13	12.63	57.00	53.99	1.42	80.06
96	ER19a	ExonRegion	0	8.06	14.19	13.70	58.24	46.77	1.23	77.56
97	E19_Da	NovelBoundary	1	3.47	3.07	0.00	1.22	1.18	0.00	22.00
98	E19a_E20a	KnownJunction	0	6.53	4.12	11.68	36.57	40.07	0.00	59.53
99	I19	Intron	0	2.73	2.25	0.96	2.31	0.79	0.51	11.13
100	I19_SR1	SilentIntronRegion	0	2.75	2.26	0.97	2.32	0.79	0.51	11.19
101	ER20a	ExonRegion	0	3.55	4.94	5.30	32.20	14.00	0.84	35.34
102	ER20b	ExonRegion	0	0.00	0.00	0.11	0.00	0.00	0.00	0.45
103	IG42	Intergenic	0	1.40	0.70	0.73	1.57	0.04	0.09	8.88
104	IG42_SR1	SilentIntergenicRegion	0	1.40	0.70	0.73	1.57	0.04	0.09	8.89