Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ATP2B4	Gene	0	114.70	370.97	69.07	54.19	90.05	127.51	410.14
2	357681	Transcript	0	80.48	395.91	67.90	65.21	73.98	104.55	348.53
3	367218	Transcript	0	0	0	0	0	0	0	0
4	367219	Transcript	0	0.00	13.96	0.42	0.00	0.59	2.96	0.31
5	356729	Transcript	0	0.03	0.05	0.00	0.00	0.00	0.11	0.03
6	391954	Transcript	0	4.92	12.06	4.28	5.45	5.33	3.83	20.42
7	341360	Transcript	0	0	0	0	0	0	0	0
8	ER1a	ExonRegion	0	0.00	0.47	0.00	0.00	0.74	0.00	0.07
9	E1_Ab	KnownBoundary	0	0.00	1.16	0.00	0.00	3.80	0.00	0.59
10	ER1b	ExonRegion	0	27.02	194.92	17.20	23.41	15.85	43.42	113.28
11	E1a_E2a	KnownJunction	1	28.02	402.95	34.10	54.97	26.44	115.83	276.47
12	ER2a	ExonRegion	1	35.54	510.26	27.10	49.51	22.06	104.73	325.41
13	E2_Ab	KnownBoundary	1	39.54	514.60	22.33	44.62	17.01	93.45	305.80
14	ER2b	ExonRegion	0	65.25	461.90	48.18	41.96	42.47	94.24	340.06
15	E2a_E3a	KnownJunction	0	69.46	406.03	58.54	43.45	28.79	74.66	342.86
16	ER3a	ExonRegion	0	124.43	470.37	58.47	58.88	69.48	95.66	337.69
17	E3a_E4a	KnownJunction	0	137.29	540.80	55.50	69.24	51.96	141.90	301.33
18	ER4a	ExonRegion	0	117.22	474.25	53.69	56.82	62.23	99.18	322.47
19	E4a_E5a	KnownJunction	0	50.65	415.30	35.41	58.90	35.02	87.88	231.91
20	ER5a	ExonRegion	0	51.39	446.16	43.81	55.38	37.65	98.89	330.03
21	E5a_E6a	KnownJunction	0	51.49	391.50	50.51	40.28	39.33	82.01	249.54
22	ER6a	ExonRegion	0	48.74	380.54	35.69	41.09	41.77	68.12	247.39
23	E6a_E7a	KnownJunction	1	25.42	230.69	23.37	17.37	45.07	37.81	206.87
24	E6a_E8a	KnownJunction	1	0.00	27.93	0.85	0.00	1.18	5.92	0.62
25	I6	Intron	1	26.90	87.21	14.29	11.58	2.65	12.71	24.23
26	I6_AR1	ActiveIntronRegion	1	19.81	86.43	9.56	8.29	1.68	9.90	23.17
27	I6_AR2	ActiveIntronRegion	1	28.43	109.03	15.35	10.08	1.69	13.69	26.37
28	I6_AR3	ActiveIntronRegion	1	26.55	104.21	14.15	7.90	1.62	13.62	28.63
29	I6_SR2	SilentIntronRegion	1	27.82	97.91	20.89	10.33	2.40	13.02	29.55
30	I6_AR4	ActiveIntronRegion	1	45.38	100.88	23.95	20.55	4.27	20.85	29.34
31	ER7a	ExonRegion	0	49.05	304.79	36.75	22.20	61.55	49.82	298.62
32	E7a_E8a	KnownJunction	1	61.02	289.75	48.04	27.23	71.79	45.80	262.98
33	I7	Intron	0	29.31	56.63	13.73	11.81	1.43	14.01	16.11
34	I7_AR1	ActiveIntronRegion	0	25.57	57.27	13.39	11.77	1.44	12.66	15.40
35	I7_AR2	ActiveIntronRegion	1	54.64	67.68	20.03	14.61	1.52	16.56	18.57
36	I7_SR3	SilentIntronRegion	0	34.74	53.33	14.97	12.00	1.69	18.96	18.72
37	ER8a	ExonRegion	0	85.53	449.98	62.39	37.77	57.55	91.68	328.44
38	E8a_E9a	KnownJunction	1	88.17	421.97	60.54	23.92	58.00	83.24	377.86
39	E8a_E10a	NovelJunction	0	7.61	18.10	7.24	1.19	0.00	1.61	10.18
40	ER9a	ExonRegion	0	91.14	453.40	57.00	43.66	81.14	102.00	401.51
41	E9a_E10a	KnownJunction	0	95.12	468.24	53.60	47.08	75.68	104.28	355.40
42	ER10a	ExonRegion	0	99.13	532.69	57.78	61.27	77.76	105.42	419.61
43	E10a_E11a	KnownJunction	0	73.75	497.79	47.62	56.38	54.40	88.17	342.99
44	ER11a	ExonRegion	0	73.68	502.06	55.88	52.65	63.03	89.57	369.76
45	E11_Da	NovelBoundary	0	21.71	101.12	9.86	14.95	0.00	15.89	32.45
46	E11a_E12a	KnownJunction	0	50.80	399.04	47.54	38.69	50.58	92.94	367.92
47	I11_AR3	ActiveIntronRegion	0	23.60	32.95	10.09	7.44	1.19	12.45	19.12
48	ER12a	ExonRegion	0	69.60	482.25	45.70	63.96	70.71	111.78	419.95
49	E12a_E13a	KnownJunction	0	80.55	450.84	44.05	71.85	49.13	105.56	382.76
50	ER13a	ExonRegion	0	73.19	517.95	47.38	64.84	76.81	110.68	451.48
51	E13a_E14a	KnownJunction	1	61.29	456.31	26.87	42.34	80.02	98.25	376.31
52	E13a_E15a	NovelJunction	1	1.74	30.45	3.43	8.61	1.15	13.45	3.10
53	ER14a	ExonRegion	0	72.38	457.71	48.06	55.42	84.30	92.63	442.35
54	E14a_E15a	KnownJunction	0	63.71	471.65	52.49	52.12	102.22	100.85	410.11
55	ER15a	ExonRegion	0	69.53	488.93	44.94	56.71	83.01	100.93	432.51
56	E15a_E16a	KnownJunction	0	108.63	514.11	47.87	70.03	95.60	98.14	458.62
57	ER16a	ExonRegion	0	108.98	607.52	71.63	76.46	97.41	138.54	524.52
58	E16a_E17a	KnownJunction	0	117.01	593.31	72.18	64.12	107.43	148.69	515.90
59	E16a_E18a	NovelJunction	0	7.66	22.15	2.87	2.74	0.00	10.99	10.61
60	ER17a	ExonRegion	0	128.81	519.33	88.21	62.05	113.50	128.21	505.29
61	E17_Da	NovelBoundary	1	51.04	3.26	28.31	0.00	0.00	0.99	5.83
62	E17a_E18a	KnownJunction	0	129.95	534.99	84.21	60.17	61.34	148.52	541.47
63	ER18a	ExonRegion	0	155.89	570.27	99.20	72.65	123.75	153.79	532.16
64	E18a_E19a	KnownJunction	0	147.46	516.79	82.05	90.19	74.83	165.73	420.64
65	E18a_E20a	KnownJunction	0	4.92	12.06	4.28	5.45	5.33	3.83	20.42
66	ER19a	ExonRegion	0	121.26	465.98	79.19	73.02	83.11	141.24	411.32
67	E19a_E20a	KnownJunction	0	106.78	396.91	92.75	59.30	91.59	131.13	391.35
68	ER20a	ExonRegion	0	106.90	440.14	79.94	72.77	89.50	145.84	390.65
69	E20_Da	NovelBoundary	0	12.20	84.96	4.21	12.41	4.20	37.31	16.47
70	E20a_E21a	KnownJunction	0	6.98	46.40	8.91	5.39	8.30	23.37	1.99
71	E20a_E22a	KnownJunction	0	80.48	395.91	67.90	65.21	73.98	104.55	348.53
72	I20	Intron	1	24.17	64.74	8.09	7.41	6.42	8.69	21.36
73	I20_SR1	SilentIntronRegion	1	13.86	95.11	10.06	18.30	7.52	5.52	31.03
74	I20_AR2	ActiveIntronRegion	0	31.48	71.51	9.86	8.15	7.75	10.71	24.90
75	I20_AR2	ActiveIntronRegion	0	25.52	43.18	7.68	8.57	9.12	11.93	25.54
76	I20_SR2	SilentIntronRegion	1	11.27	38.89	7.45	10.90	5.23	8.46	26.51
77	ER21a	ExonRegion	0	19.14	89.11	13.94	9.86	10.90	36.54	26.28
78	E21_Da	KnownBoundary	1	37.37	127.52	16.77	9.78	21.76	58.69	47.31
79	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
80	ER21b	ExonRegion	0	21.18	62.88	8.86	13.16	12.68	35.97	18.52
81	E21_Db	NovelBoundary	0	28.16	69.49	7.08	15.58	9.57	12.54	17.31
82	E21b_E22a	KnownJunction	0	2.80	15.58	3.75	7.21	2.12	21.44	2.25
83	ER22a	ExonRegion	0	108.78	398.41	75.03	62.72	98.31	150.47	540.45
84	E22_Da	KnownBoundary	0	133.45	243.25	59.12	39.20	64.62	91.82	355.86
85	ER22b	ExonRegion	0	162.29	309.36	91.56	59.68	125.13	165.22	479.71
86	ER23a	ExonRegion	0	0.03	0.05	0.00	0.00	0.00	0.11	0.03