Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RP1-21O18.1	Gene	0	21.23	21.31	26.01	19.67	13.13	62.53	23.05
2	376030	Transcript	1	0.81	0.49	0.28	1.95	0.93	10.83	0.00
3	408892	Transcript	0	0	0	0	0	0	0	0
4	376028	Transcript	0	0.00	0.00	0.00	0.00	0.00	1.26	0.00
5	361144	Transcript	0	5.49	15.98	6.59	12.53	3.90	30.22	12.48
6	400798	Transcript	0	0.36	0.57	1.05	1.16	0.17	0.41	0.21
7	400797	Transcript	1	10.63	8.58	2.97	5.46	1.61	10.13	1.20
8	338894	Transcript	0	1.67	2.69	1.84	2.85	1.10	6.83	1.40
9	ER1a	ExonRegion	0	0.81	0.49	0.28	1.95	0.93	10.83	0.00
10	E1_Ab	KnownBoundary	1	1.75	1.63	0.00	8.67	2.17	25.27	0.00
11	ER1b	ExonRegion	1	0.24	0.59	0.09	4.72	1.39	29.51	0.00
12	E1a_E5b	KnownJunction	1	0.00	0.00	0.86	3.03	6.11	34.73	0.00
13	I1_AR11	ActiveIntronRegion	0	0.92	1.21	4.40	4.49	7.94	2.70	0.00
14	I1_AR12	ActiveIntronRegion	0	1.54	1.21	4.06	3.74	8.40	3.68	0.00
15	I1_AR13	ActiveIntronRegion	0	1.54	1.21	3.45	3.74	8.47	2.23	0.00
16	I1_AR29	ActiveIntronRegion	1	0.00	0.00	1.45	0.00	1.81	29.04	0.00
17	I1_SR17	SilentIntronRegion	1	0.51	0.00	0.87	0.80	0.92	28.03	0.00
18	I1_AR30	ActiveIntronRegion	1	0.24	0.00	0.68	2.60	1.39	49.78	0.00
19	I1_SR18	SilentIntronRegion	1	0.11	0.00	0.66	0.88	0.86	25.70	0.00
20	ER2a	ExonRegion	0	0.84	3.90	1.46	4.16	0.86	8.26	1.75
21	E2a_E5b	KnownJunction	0	10.13	28.06	11.73	20.89	6.94	52.18	23.22
22	ER3a	ExonRegion	0	0.72	1.13	2.10	2.32	0.34	0.81	0.41
23	E3a_E5b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E4_Aa	NovelBoundary	1	12.23	11.14	1.41	5.82	1.18	4.56	0.82
25	ER4a	ExonRegion	0	9.17	7.41	2.09	5.78	0.95	5.27	2.40
26	E4a_E5b	KnownJunction	1	12.08	9.75	3.85	5.15	2.28	14.98	0.00
27	ER5a	ExonRegion	0	2.96	5.38	2.32	4.45	2.20	13.66	2.79
28	ER5b	ExonRegion	0	35.53	59.88	43.71	54.35	16.68	174.42	41.99
29	E5a_E6a	KnownJunction	0	46.23	74.03	63.93	76.23	28.65	248.81	56.98
30	I5_SR2	SilentIntronRegion	0	2.02	9.52	1.76	2.43	1.50	5.63	2.70
31	ER6a	ExonRegion	0	57.21	77.05	65.64	79.57	29.81	268.42	72.05
32	E6a_E7a	KnownJunction	0	48.93	85.36	58.21	69.08	23.26	236.29	81.67
33	ER7a	ExonRegion	0	58.99	82.11	68.68	68.88	39.34	222.06	93.71
34	E7a_E8a	KnownJunction	0	50.14	92.11	54.25	85.31	29.51	248.92	103.66
35	ER8a	ExonRegion	0	34.18	69.73	55.38	64.99	34.70	185.05	88.48
36	E8a_E9a	KnownJunction	0	13.60	29.53	17.83	12.60	11.83	78.42	19.51
37	ER9a	ExonRegion	0	40.69	60.46	46.63	37.47	28.35	125.96	61.15
38	E9a_E10a	KnownJunction	0	55.59	64.47	68.92	41.02	23.77	151.45	83.91
39	E9a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.26	0.00
40	ER10a	ExonRegion	0	46.59	73.99	58.65	44.45	27.42	151.06	68.24
41	E10_Da	NovelBoundary	0	6.34	8.46	6.21	4.61	2.05	11.04	1.61
42	E10a_E11a	KnownJunction	0	40.62	67.57	39.06	41.80	31.58	132.55	49.59
43	ER11a	ExonRegion	0	80.97	76.09	68.00	50.00	38.47	169.67	82.24
44	E11_Da	KnownBoundary	0	70.93	53.33	43.73	23.24	51.22	108.16	66.08
45	E11a_E12a	KnownJunction	1	5.39	1.16	19.50	16.23	0.00	31.11	0.79
46	ER11b	ExonRegion	1	77.28	48.46	38.30	15.81	25.47	104.85	48.86
47	E11_Db	KnownBoundary	1	70.01	44.82	26.59	12.03	15.51	88.68	33.91
48	ER11c	ExonRegion	0	40.40	34.37	33.49	22.67	34.38	95.96	51.74
49	ER12a	ExonRegion	1	2.37	4.84	14.08	13.37	0.99	31.07	0.71
50	E12a_E13a	KnownJunction	1	0.77	3.57	20.48	14.06	2.28	38.19	0.66
51	ER13a	ExonRegion	1	2.12	2.01	14.30	14.76	1.37	26.14	1.74
52	E13a_E14a	KnownJunction	0	1.82	3.86	8.21	11.65	0.00	17.15	0.83
53	ER14a	ExonRegion	1	4.59	2.58	26.18	20.28	1.16	38.84	1.95
54	E14a_E15a	KnownJunction	1	6.73	0.00	25.87	12.16	1.18	35.35	0.62
55	E14a_E16a	NovelJunction	1	0.00	0.00	0.00	3.06	0.00	7.88	0.00
56	ER15a	ExonRegion	1	4.61	1.23	13.87	12.58	0.59	27.36	1.16
57	E15a_E16a	KnownJunction	1	4.62	1.63	12.23	14.25	0.00	31.84	0.86
58	ER16a	ExonRegion	1	3.98	3.16	14.94	15.97	0.25	34.83	1.56
59	E16a_E17a	KnownJunction	1	4.47	3.26	10.50	12.16	0.00	35.72	1.55
60	E17_Aa	NovelBoundary	1	18.06	25.38	7.40	0.00	4.47	3.08	4.76
61	ER17a	ExonRegion	1	10.60	12.43	18.52	12.43	2.35	42.49	3.98
62	E17_Da	NovelBoundary	1	33.65	20.99	15.03	2.95	3.20	0.00	8.38
63	E17a_E18a	KnownJunction	1	1.65	8.85	17.98	14.28	3.23	28.49	2.57
64	I17	Intron	1	21.95	14.69	12.23	3.19	3.60	1.86	6.16
65	I17_AR1	ActiveIntronRegion	1	13.63	13.87	7.15	1.73	1.12	1.25	3.03
66	I17_SR1	SilentIntronRegion	1	26.55	16.25	14.96	3.95	4.42	2.22	7.72
67	E18_Aa	NovelBoundary	1	18.83	28.14	20.56	1.52	4.22	4.45	6.94
68	ER18a	ExonRegion	1	24.29	22.08	41.14	25.34	5.16	48.39	8.45
69	E18_Da	KnownBoundary	1	25.29	30.97	37.75	22.84	2.93	43.47	8.51
70	ER18b	ExonRegion	0	11.81	10.16	23.78	13.90	2.16	33.00	4.46
71	ER18c	ExonRegion	0	0.38	0.00	1.35	1.25	0.00	0.00	0.00