Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 NPHP4 Gene 0 7.08 9.65 9.59 18.09 14.50 18.69 11.42 2 378162 Transcript 0 0.47 1.25 1.06 4.07 0.32 1.45 0.00 3 378169 Transcript 0 0.00 0.00 0.11 0.21 0.20 0.00 0.00 4 378156 Transcript 0 2.32 4.50 2.16 14.40 10.49 13.75 6.60 5 378160 Transcript 0 0.99 0.00 0.43 0.04 0.00 0.00 0.00 6 378161 Transcript 0 1.07 1.24 1.13 1.26 2.54 0.74 1.85 7 ER1a ExonRegion 0 0.01 2.08 1.17 5.35 0.42 3.85 1.66 8 E1a_E2a KnownJunction 0 1.03 6.96 1.64 4.17 1.08 4.69 2.41 9 ER2a ExonRegion 0 6.88 18.62 11.22 21.96 12.56 24.20 9.55 10 E2a_E3a KnownJunction 0 8.06 26.88 13.88 28.82 15.86 32.96 15.84 11 ER3a ExonRegion 0 12.26 25.97 21.86 32.93 19.81 41.80 21.65 12 E3a_E4a KnownJunction 0 15.69 14.69 31.79 33.67 29.92 38.81 25.95 13 ER4a ExonRegion 0 18.27 19.81 28.18 38.50 18.23 45.05 24.77 14 E4a_E5a KnownJunction 0 12.72 11.51 30.67 28.77 28.56 39.32 21.48 15 ER5a ExonRegion 0 17.99 19.34 24.46 35.55 20.45 38.72 25.89 16 E5a_E6a KnownJunction 0 22.08 20.26 25.77 42.21 16.30 35.88 23.09 17 ER6a ExonRegion 0 15.80 16.90 21.24 28.49 15.56 27.47 18.50 18 E6_Ab KnownBoundary 0 14.15 18.73 20.25 12.22 16.99 7.75 18.77 19 ER6b ExonRegion 0 12.87 16.22 17.07 19.23 14.40 15.54 20.52 20 E6a_E7a KnownJunction 0 13.19 14.34 12.40 19.86 12.38 20.74 19.92 21 ER7a ExonRegion 0 12.68 17.22 21.06 21.00 18.17 23.91 18.77 22 E7a_E8a KnownJunction 1 12.32 18.68 10.33 14.60 17.31 34.49 15.25 23 ER8a ExonRegion 0 12.13 20.93 16.35 27.93 19.64 31.60 22.29 24 E8a_E9a KnownJunction 0 8.83 23.80 11.96 29.99 24.64 45.67 23.96 25 ER9a ExonRegion 0 14.46 20.96 20.71 34.66 23.61 37.08 27.25 26 E9a_E10a KnownJunction 0 12.95 20.99 26.20 37.58 35.73 48.11 25.95 27 ER10a ExonRegion 0 17.66 21.38 22.44 47.12 25.33 39.77 24.86 28 E10a_E11a KnownJunction 0 14.27 23.85 16.94 40.26 22.55 26.26 24.81 29 E11_Aa NovelBoundary 0 1.03 1.97 0.73 5.55 2.05 7.93 0.00 30 ER11a ExonRegion 0 14.42 15.60 16.57 33.84 21.60 31.90 18.23 31 E11a_E12a KnownJunction 0 6.84 10.56 6.34 13.90 6.32 16.46 13.49 32 E11a_E14b NovelJunction 0 0.00 0.00 1.62 8.24 0.00 3.89 0.69 33 ER12a ExonRegion 0 8.13 8.68 7.20 10.44 10.84 19.34 13.73 34 E12a_E13a KnownJunction 0 7.93 5.46 8.88 6.42 13.49 14.47 14.98 35 ER13a ExonRegion 0 8.49 9.08 9.19 9.56 7.08 13.20 10.86 36 E13a_E14a KnownJunction 0 1.55 7.83 2.80 4.82 1.06 5.55 3.37 37 E13a_E14b KnownJunction 0 3.29 6.33 4.68 11.59 6.94 11.01 6.22 38 ER14a ExonRegion 0 2.69 9.11 4.57 7.48 2.63 8.58 6.07 39 ER14b ExonRegion 0 6.85 15.34 15.12 22.62 15.05 18.06 15.88 40 E14a_E15a KnownJunction 0 8.43 18.94 18.19 29.29 28.12 29.18 24.62 41 ER15a ExonRegion 0 14.61 23.42 26.31 41.11 26.09 38.78 26.66 42 E15a_E16a KnownJunction 0 9.76 20.57 25.18 29.37 25.01 31.95 30.76 43 ER16a ExonRegion 0 16.08 18.76 21.37 34.78 29.88 43.22 27.01 44 E16a_E17a KnownJunction 0 9.78 15.18 12.60 34.11 36.15 22.32 15.16 45 ER17a ExonRegion 0 10.75 12.77 12.77 27.17 21.50 19.12 17.33 46 E17a_E18a KnownJunction 0 1.95 0.00 0.85 0.00 0.00 0.00 0.00 47 E17a_E19a KnownJunction 1 7.01 5.91 9.44 31.13 11.85 20.77 12.75 48 ER18a ExonRegion 0 0.02 0.00 0.02 0.08 0.00 0.00 0.00 49 ER19a ExonRegion 0 7.65 9.95 9.55 23.94 17.84 19.30 18.66 50 E19a_E20a KnownJunction 0 0.00 0.00 0.00 0.00 0.90 0.00 0.00 51 E19b_E20b KnownJunction 0 2.29 12.01 7.76 13.30 17.20 18.38 8.10 52 ER19b ExonRegion 0 5.76 15.19 9.31 16.21 25.92 22.99 12.65 53 ER20a ExonRegion 0 1.08 3.16 1.76 3.49 8.10 4.66 2.56 54 ER20b ExonRegion 0 6.77 17.63 9.34 26.06 21.96 29.24 15.35 55 E20a_E21a KnownJunction 0 0.82 1.18 1.45 5.55 0.00 0.00 0.00 56 E20a_E22a KnownJunction 0 6.51 22.51 8.52 38.06 14.59 18.63 14.82 57 ER21a ExonRegion 0 0.13 1.31 0.67 2.59 0.65 2.90 0.00 58 ER22a ExonRegion 0 5.93 11.54 6.82 27.02 22.66 24.34 13.44 59 E22a_E23a KnownJunction 1 5.14 12.03 3.54 34.13 20.79 32.56 14.83 60 E22b_E23b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER22b ExonRegion 0 0.00 0.00 0.23 0.42 0.40 0.00 0.00 62 ER23a ExonRegion 1 5.38 7.29 3.48 34.38 22.68 31.53 14.94 63 ER23b ExonRegion 1 10.46 14.23 8.12 44.32 30.03 31.66 22.07 64 E23a_E24a KnownJunction 0 9.76 11.95 11.34 31.43 33.84 19.05 20.36 65 ER24a ExonRegion 0 8.94 13.18 12.37 34.94 31.01 24.78 17.33 66 E24a_E25a KnownJunction 0 5.36 11.98 12.44 22.35 19.62 22.70 10.78 67 ER25a ExonRegion 0 8.83 8.89 17.43 28.15 38.00 27.19 15.97 68 E25a_E26b KnownJunction 0 10.63 10.56 15.79 21.75 26.10 17.02 9.96 69 ER26a ExonRegion 0 0.90 1.67 1.07 1.43 1.00 0.82 1.27 70 E26_Ab KnownBoundary 0 0.00 4.86 0.73 0.00 0.00 0.00 0.77 71 ER26b ExonRegion 0 12.56 11.56 18.60 27.60 24.12 25.66 11.53 72 E26a_E27a KnownJunction 1 18.99 8.67 25.69 21.08 38.50 26.59 13.23 73 ER27a ExonRegion 0 14.09 12.05 23.76 23.66 39.54 23.75 15.41 74 E27a_E28a KnownJunction 1 9.53 21.02 20.98 27.39 28.68 25.46 9.73 75 ER28a ExonRegion 0 12.38 13.14 18.79 20.21 28.15 24.41 15.40 76 E28_Da KnownBoundary 0 1.89 0.00 0.00 0.00 2.12 0.00 1.39 77 E28a_E28b KnownJunction 0 12.28 14.76 13.24 6.18 27.25 5.47 18.92 78 E28a_E28c NovelJunction 0 3.24 4.02 2.82 8.05 3.34 10.88 1.62 79 E28a_E28d NovelJunction 1 0.00 0.00 0.89 1.08 0.00 8.31 0.00 80 ER28b ExonRegion 0 1.31 1.43 1.21 1.74 3.11 0.38 2.18 81 E28_Ab KnownBoundary 0 0.00 3.26 0.75 1.14 1.06 1.66 3.61 82 ER28c ExonRegion 0 6.04 8.99 7.32 15.65 22.04 14.41 11.83 83 E28_Db KnownBoundary 0 1.70 1.63 1.15 0.00 4.45 0.00 2.39 84 E28b_E28c KnownJunction 0 6.66 5.44 6.50 14.79 28.63 21.92 16.42 85 ER28d ExonRegion 0 1.73 0.10 1.33 0.35 2.62 0.20 1.69 86 E28_Ac KnownBoundary 0 4.72 0.00 2.07 0.00 1.11 0.00 0.82 87 ER28e ExonRegion 0 5.98 11.18 6.50 16.87 14.28 30.57 12.39 88 E28_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.80 89 E28c_E28d KnownJunction 0 11.47 18.52 7.19 20.64 11.90 32.32 15.28 90 ER28f ExonRegion 0 0.14 0.59 0.21 0.05 0.69 0.42 1.78 91 E28_Ad KnownBoundary 0 1.03 0.00 0.53 0.00 1.08 0.00 3.25 92 ER28g ExonRegion 0 12.36 14.23 11.54 23.44 26.58 37.65 18.75 93 E28_Dd KnownBoundary 0 1.03 1.47 1.34 0.00 3.25 1.10 2.29 94 E28d_E28e KnownJunction 0 7.19 12.74 9.44 22.51 30.48 37.31 16.72 95 ER28h ExonRegion 0 1.26 2.43 1.83 2.72 5.27 1.86 2.31 96 E28_Ae KnownBoundary 0 4.32 2.10 3.72 1.49 8.02 3.81 2.69 97 ER28i ExonRegion 0 11.78 14.58 15.31 35.71 28.56 46.10 16.14 98 ER28j ExonRegion 1 4.61 0.87 7.64 1.96 12.38 8.58 2.79 99 ER28k ExonRegion 0 0.00 0.00 2.03 0.00 0.00 0.00 0.67