Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PPFIA3	Gene	0	5.64	12.74	4.02	6.38	26.16	1.16	4.47
2	334186	Transcript	0	0.00	0.51	0.00	0.00	0.42	0.00	0.48
3	334329	Transcript	0	2.34	7.86	2.23	1.27	44.42	0.00	6.28
4	ER1a	ExonRegion	0	0.12	1.22	0.00	0.30	0.51	0.00	0.00
5	E1a_E2a	KnownJunction	0	0.00	2.92	0.00	0.00	0.00	0.00	0.00
6	ER2a	ExonRegion	0	0.73	2.96	1.34	3.19	2.36	0.00	1.45
7	E2a_E3a	KnownJunction	0	2.07	2.89	1.34	3.85	1.13	0.00	4.00
8	ER3a	ExonRegion	0	3.10	2.63	4.58	6.97	6.53	0.02	5.40
9	E3a_E4a	KnownJunction	0	7.59	1.52	4.31	9.67	5.21	0.00	3.68
10	I3	Intron	0	0.32	1.83	0.68	0.00	11.47	0.00	0.00
11	I3_AR1	ActiveIntronRegion	0	0.36	2.06	0.76	0.00	12.19	0.00	0.00
12	E4_Aa	NovelBoundary	0	0.00	2.34	0.00	0.00	12.77	0.00	0.00
13	ER4a	ExonRegion	0	7.38	6.32	4.71	8.57	17.79	0.53	2.88
14	E4a_E5a	KnownJunction	0	8.36	5.15	5.06	9.27	17.40	0.00	3.22
15	ER5a	ExonRegion	0	6.16	5.57	3.98	4.51	20.41	0.00	2.04
16	E5a_E6a	KnownJunction	0	7.81	9.41	7.93	3.17	29.05	0.00	2.22
17	ER6a	ExonRegion	0	7.61	9.77	5.57	3.54	28.46	0.74	4.21
18	E6a_E7a	KnownJunction	0	7.64	5.94	3.33	1.68	22.78	1.66	7.28
19	ER7a	ExonRegion	0	5.64	11.25	2.56	4.11	22.10	0.59	4.63
20	E7a_E8a	KnownJunction	0	2.57	11.90	0.00	7.50	21.07	0.00	7.68
21	ER8a	ExonRegion	0	5.36	14.32	3.06	10.92	22.32	0.63	5.44
22	E8a_E9a	KnownJunction	0	4.04	17.23	0.62	13.76	17.11	0.00	6.41
23	ER9a	ExonRegion	0	4.58	8.16	3.06	8.64	18.96	0.67	5.03
24	E9a_E10a	KnownJunction	0	7.78	7.28	3.75	4.88	30.25	0.00	5.26
25	ER10a	ExonRegion	0	5.16	10.77	2.64	6.25	19.41	0.03	3.51
26	E10a_E11a	KnownJunction	0	5.57	14.03	4.05	7.42	19.41	0.00	3.50
27	ER11a	ExonRegion	0	3.94	7.02	5.35	7.28	33.88	0.71	5.15
28	E11a_E12a	KnownJunction	0	6.71	5.33	5.60	11.59	29.18	0.00	6.06
29	ER12a	ExonRegion	0	6.60	7.77	7.56	10.85	35.97	0.00	6.75
30	E12a_E13a	KnownJunction	0	2.69	7.78	7.08	12.76	41.50	0.00	4.46
31	ER13a	ExonRegion	0	3.30	8.22	5.18	6.34	29.58	1.10	4.22
32	E13a_E14a	KnownJunction	0	5.91	7.41	6.28	5.36	24.00	0.00	7.05
33	ER14a	ExonRegion	0	5.68	8.64	4.87	8.53	29.42	0.13	5.58
34	E14a_E15a	KnownJunction	0	3.54	4.26	0.79	7.99	41.63	1.13	4.30
35	ER15a	ExonRegion	0	6.68	11.59	4.02	9.80	30.58	1.13	6.23
36	E15a_E16a	KnownJunction	0	2.82	12.98	2.89	6.26	18.07	1.66	3.68
37	ER16a	ExonRegion	0	5.23	6.95	3.46	4.57	25.36	0.62	2.96
38	E16a_E17a	KnownJunction	0	7.91	2.73	3.03	0.00	8.02	0.00	3.00
39	ER17a	ExonRegion	0	4.46	4.24	3.51	0.96	19.89	3.39	1.65
40	E17a_E18a	KnownJunction	0	8.43	5.67	4.83	1.68	25.96	0.00	3.71
41	ER18a	ExonRegion	0	5.04	7.66	3.59	6.64	23.81	0.75	3.07
42	E18a_E19a	KnownJunction	0	4.12	7.51	5.30	9.92	26.12	1.15	2.82
43	ER19a	ExonRegion	0	4.75	6.04	2.57	10.44	33.06	0.97	4.18
44	E19a_E20a	KnownJunction	0	9.36	5.49	1.49	7.86	43.82	0.00	5.80
45	ER20a	ExonRegion	0	5.25	8.52	2.84	7.68	27.73	0.00	4.76
46	E20a_E21a	KnownJunction	0	4.04	8.12	2.53	11.84	34.60	0.00	5.47
47	ER21a	ExonRegion	0	5.17	7.56	5.06	9.94	39.65	0.00	7.82
48	E21a_E22a	KnownJunction	0	6.96	7.15	5.81	5.91	23.49	0.00	9.01
49	ER22a	ExonRegion	0	5.03	10.55	4.99	4.57	40.20	0.00	9.14
50	E22a_E23a	KnownJunction	0	0.00	1.52	0.00	0.00	0.00	0.00	0.00
51	E22a_E24a	KnownJunction	0	2.34	7.86	2.23	1.27	44.42	0.00	6.28
52	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.95	0.00	0.80
53	ER23a	ExonRegion	0	0.00	0.00	0.00	0.00	0.30	0.00	0.62
54	ER24a	ExonRegion	0	6.70	11.15	4.33	8.21	43.62	0.00	8.31
55	E24a_E25a	KnownJunction	0	7.93	12.24	4.76	9.64	75.94	0.00	7.77
56	ER25a	ExonRegion	0	7.25	16.77	4.14	6.15	52.54	0.93	7.99
57	E25_Da	NovelBoundary	0	0.00	8.35	1.39	1.68	2.21	1.63	0.00
58	E25a_E26a	KnownJunction	0	5.62	10.06	5.79	8.91	42.86	0.00	6.82
59	ER26a	ExonRegion	0	10.92	15.26	8.57	7.10	68.73	1.06	9.28
60	E26a_E27a	KnownJunction	0	9.05	7.46	7.75	13.65	34.33	0.00	8.05
61	ER27a	ExonRegion	0	6.64	18.43	4.02	6.22	32.50	0.55	4.92
62	E27a_E28a	KnownJunction	0	4.44	14.24	2.53	1.27	19.96	1.66	3.61
63	ER28a	ExonRegion	0	10.34	26.47	8.45	7.90	51.60	0.35	7.76
64	E28_Da	NovelBoundary	0	1.50	11.74	0.00	0.00	0.00	3.51	0.00
65	E28a_E29a	KnownJunction	0	3.02	16.89	1.15	7.37	15.54	0.00	5.78
66	I28	Intron	0	3.40	20.38	2.61	2.61	6.94	1.29	1.70
67	I28_AR1	ActiveIntronRegion	0	3.42	20.49	2.62	2.62	6.98	1.30	1.71
68	E29_Aa	NovelBoundary	0	3.54	35.89	0.69	4.85	1.08	1.39	1.32
69	ER29a	ExonRegion	0	4.70	21.31	4.40	10.56	24.62	5.41	7.76
70	E29_Da	NovelBoundary	0	13.70	35.55	5.07	6.26	9.84	5.39	8.01
71	E29a_E30a	KnownJunction	0	8.31	17.47	5.91	10.05	32.20	5.36	6.84
72	I29	Intron	0	1.13	2.20	1.62	0.00	9.19	0.00	0.00
73	I29_AR1	ActiveIntronRegion	0	1.14	2.25	1.65	0.00	9.36	0.00	0.00
74	E30_Aa	NovelBoundary	0	3.84	31.37	0.00	2.71	18.70	0.00	3.83
75	ER30a	ExonRegion	0	7.98	30.59	4.59	6.65	23.12	3.75	3.32