Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HIF3A	Gene	0	0.66	0.33	0.39	0.16	87.40	0.31	0.16
2	244302	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	244303	Transcript	0	0.07	0.00	0.00	0.00	1.35	0.00	0.00
4	377670	Transcript	0	0	0	0	0	0	0	0
5	339613	Transcript	0	0.00	0.00	0.00	0.00	0.87	0.00	0.00
6	291300	Transcript	0	0.00	0.00	0.00	0.00	7.72	0.00	0.00
7	300862	Transcript	0	0.00	0.00	0.00	0.00	0.23	0.00	0.00
8	IG2_AR1	ActiveIntergenicRegion	0	56.41	32.14	1.79	0.45	0.00	1.09	48.07
9	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	38.30	0.00	0.00
11	E1a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	88.29	0.00	0.00
12	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.87	0.00	0.00
13	ER2b	ExonRegion	0	0.00	0.00	0.00	0.00	1.81	0.00	0.00
14	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	3.34	0.00	0.00
15	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.47	0.00	0.00
16	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER4a	ExonRegion	0	0.00	0.97	0.00	0.00	35.35	0.00	0.00
18	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	30.48	0.00	0.00
19	E4a_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	43.87	0.00	0.00
20	E4a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER5a	ExonRegion	0	0.31	1.26	0.00	0.00	60.42	0.55	0.00
22	E5a_E6a	KnownJunction	0	0.82	0.00	0.00	0.00	79.62	1.13	0.00
23	ER6a	ExonRegion	0	0.27	0.00	0.00	0.00	124.16	0.52	0.00
24	E6_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	176.95	0.00	0.00
25	ER6b	ExonRegion	0	0.58	0.00	0.00	0.00	113.75	2.12	0.00
26	E6a_E7a	KnownJunction	0	0.93	0.00	0.00	0.00	53.21	3.14	0.00
27	ER7a	ExonRegion	0	0.86	0.00	0.00	0.00	50.71	0.99	0.00
28	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	93.94	1.02	0.00
29	ER8a	ExonRegion	0	0.70	0.00	0.05	0.00	85.79	1.58	0.00
30	E8_Da	KnownBoundary	0	0.88	0.00	0.59	0.00	60.21	1.66	0.00
31	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	ER8b	ExonRegion	0	0.24	0.00	0.64	0.00	74.93	0.67	0.00
33	E8b_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	88.73	0.00	0.00
34	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E9a_E10b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	E10_Ab	NovelBoundary	0	0.00	0.00	0.00	0.00	46.75	0.00	0.00
37	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	88.09	0.00	0.00
38	ER10b	ExonRegion	0	0.00	0.00	0.00	0.00	71.28	0.00	0.00
39	E10_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	37.53	0.00	0.00
40	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	E10b_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	66.05	0.00	0.00
42	E10b_E13a	NovelJunction	0	0.00	0.00	0.00	0.00	10.07	0.00	0.00
43	ER10c	ExonRegion	0	0.00	0.00	0.00	0.00	61.55	0.00	0.00
44	ER11a	ExonRegion	0	0.43	0.00	0.00	0.00	8.10	0.00	0.00
45	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	65.48	0.33	0.16
46	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	46.11	1.66	0.89
47	I12_AR1	ActiveIntronRegion	0	0.16	0.00	0.00	0.00	25.50	0.00	0.00
48	I12_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.47	17.53	0.00	0.00
49	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	87.80	1.94	0.23
50	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	78.17	0.00	0.00
51	ER14a	ExonRegion	0	0.14	0.00	0.00	0.00	81.52	0.00	0.27
52	E14a_E15a	KnownJunction	0	1.03	0.00	0.00	0.00	86.59	0.00	0.00
53	ER15a	ExonRegion	0	0.31	0.88	0.49	0.00	77.44	0.00	0.00
54	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	83.41	0.00	0.00
55	E15a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	7.72	0.00	0.00
56	ER16a	ExonRegion	0	0.43	0.00	0.00	0.00	63.21	0.46	0.00
57	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	30.68	1.55	0.00
58	ER17a	ExonRegion	0	0.49	0.99	0.00	0.00	79.65	0.51	0.00
59	E17_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	5.49	0.00	0.00
60	E17a_E18a	KnownJunction	0	0.00	1.34	0.00	0.00	85.11	0.00	0.00
61	ER17b	ExonRegion	0	0.00	0.00	0.00	0.00	3.39	0.00	0.00
62	ER18a	ExonRegion	0	0.00	0.83	0.11	0.00	65.09	0.00	0.00
63	E18a_E19a	KnownJunction	0	0.00	0.00	0.63	0.00	20.42	0.00	0.00
64	ER19a	ExonRegion	0	0.94	0.37	0.62	0.26	109.79	0.26	0.23