Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TULP2	Gene	0	10.75	20.93	6.96	49.03	9.92	91.48	0.41
2	221399	Transcript	0	4.86	8.97	3.08	20.43	6.68	36.65	0.17
3	IG28_AR2	ActiveIntergenicRegion	0	0.00	1.21	1.35	4.99	0.00	9.81	0.00
4	ER1a	ExonRegion	0	0.41	0.64	0.00	0.66	0.00	0.65	0.00
5	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER4a	ExonRegion	0	0.46	0.00	1.10	2.24	0.34	4.34	0.00
11	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E5_Aa	NovelBoundary	0	1.79	2.86	1.94	4.14	10.03	8.15	0.70
13	ER5a	ExonRegion	0	0.84	2.68	0.72	1.34	9.84	8.12	0.00
14	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	9.96	0.00	0.00
15	ER6a	ExonRegion	0	0.60	2.28	4.38	4.07	15.57	8.54	0.00
16	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	9.66	0.00	0.00
17	E7_Aa	NovelBoundary	0	25.79	37.83	6.22	122.99	0.00	308.87	0.00
18	ER7a	ExonRegion	0	25.44	27.88	8.94	53.94	12.53	148.32	0.00
19	E7_Da	NovelBoundary	0	33.16	59.93	10.94	102.51	0.00	278.61	0.00
20	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	1.16	10.70	0.00	0.00
21	I7	Intron	0	12.77	21.37	5.04	50.63	0.33	165.30	0.00
22	I7_SR1	SilentIntronRegion	0	12.81	21.43	5.05	50.77	0.33	165.77	0.00
23	E8_Aa	NovelBoundary	1	7.84	32.52	6.97	86.61	0.00	280.49	0.00
24	ER8a	ExonRegion	0	6.60	26.55	4.49	70.87	13.42	189.30	0.16
25	E8_Da	NovelBoundary	1	11.03	19.52	4.97	70.79	0.85	181.65	0.00
26	E8a_E9a	KnownJunction	0	0.00	1.18	0.00	0.00	5.21	0.00	0.00
27	I8	Intron	0	7.93	8.11	3.78	37.01	0.70	72.58	0.00
28	I8_SR1	SilentIntronRegion	1	7.96	8.14	3.80	37.16	0.71	72.88	0.00
29	E9_Aa	NovelBoundary	0	11.82	10.32	6.87	31.40	0.00	74.72	0.00
30	ER9a	ExonRegion	0	5.88	7.19	2.40	28.28	16.81	52.39	0.03
31	E9_Da	NovelBoundary	1	17.79	25.35	5.93	119.85	1.11	279.60	0.89
32	E9a_E10a	KnownJunction	0	1.03	0.00	0.00	0.00	16.21	1.66	0.00
33	I9	Intron	1	8.05	14.98	7.95	58.17	1.39	139.28	0.31
34	I9_SR1	SilentIntronRegion	1	8.08	15.03	7.98	58.38	1.39	139.79	0.31
35	E10_Aa	NovelBoundary	0	8.24	23.80	12.30	81.38	0.97	118.40	0.77
36	ER10a	ExonRegion	0	5.26	16.62	6.66	48.20	13.13	83.47	0.42
37	E10_Da	NovelBoundary	0	34.15	43.27	37.74	124.35	6.39	245.70	1.15
38	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	1.04	1.21	0.00
39	I10	Intron	0	4.82	7.83	5.07	18.56	5.20	28.82	0.00
40	I10_SR1	SilentIntronRegion	0	4.92	7.94	5.15	18.79	5.32	29.23	0.00
41	E11_Aa	NovelBoundary	0	27.64	54.36	25.87	139.79	9.80	243.07	0.00
42	ER11a	ExonRegion	0	8.13	24.31	6.98	43.58	12.30	84.46	0.00
43	E11_Da	NovelBoundary	0	49.24	60.92	41.40	199.66	5.16	326.45	0.76
44	E11a_E12a	KnownJunction	0	0.00	1.44	0.00	0.00	2.21	0.00	0.00
45	E12_Aa	NovelBoundary	0	45.50	70.17	36.46	243.98	10.30	263.82	0.00
46	ER12a	ExonRegion	0	50.37	77.31	33.68	173.58	12.49	226.70	2.96
47	E12_Da	NovelBoundary	0	53.12	112.28	53.07	261.78	20.38	361.69	6.58
48	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	I12	Intron	0	39.41	62.29	31.82	163.44	12.05	184.45	3.10
50	I12_SR1	SilentIntronRegion	0	39.69	62.72	32.03	164.58	12.13	185.72	3.12
51	E13_Aa	NovelBoundary	0	25.60	73.69	20.10	180.89	10.93	189.98	4.70
52	ER13a	ExonRegion	0	16.47	36.18	7.59	82.77	5.57	107.17	0.66
53	IG27	Intergenic	0	33.36	74.88	37.69	127.78	2.20	139.16	3.08
54	IG27_AR2	ActiveIntergenicRegion	0	0.77	11.54	0.90	25.77	2.56	30.65	0.11
55	IG27_SR2	SilentIntergenicRegion	0	1.28	19.04	1.83	32.67	10.11	38.28	0.67
56	IG27_SR1	SilentIntergenicRegion	0	37.50	82.20	42.31	140.28	1.34	152.38	3.38