Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	BAX	Gene	0	52.48	95.75	54.03	71.13	261.16	59.68	188.32
2	293288	Transcript	0	61.48	97.57	43.97	73.02	157.37	53.87	216.13
3	356483	Transcript	0	2.10	10.37	1.92	4.84	5.95	4.92	10.15
4	354470	Transcript	0	1.03	0.00	0.80	0.00	2.14	0.00	0.00
5	345358	Transcript	0	0	0	0	0	0	0	0
6	391871	Transcript	0	0.00	13.56	0.00	5.47	1.15	5.60	5.57
7	ER1a	ExonRegion	0	0.43	0.13	0.00	0.14	9.40	0.00	0.00
8	ER1b	ExonRegion	0	1.30	18.75	0.97	17.59	29.18	13.28	4.22
9	E1a_E2a	KnownJunction	0	13.87	52.65	9.86	34.03	48.78	22.62	30.73
10	E1a_E3a	KnownJunction	0	0.00	13.56	0.00	5.47	1.15	5.60	5.57
11	ER2a	ExonRegion	1	5.88	46.19	12.14	39.02	56.44	33.97	52.06
12	E2a_E3a	KnownJunction	0	12.20	63.03	21.48	52.99	57.49	47.11	90.42
13	E2a_E4a	KnownJunction	0	1.03	0.00	0.80	0.00	2.14	0.00	0.00
14	ER3a	ExonRegion	0	63.79	143.97	81.81	103.40	399.68	97.12	251.73
15	E3a_E4a	KnownJunction	0	114.66	192.91	180.12	170.29	1430.24	137.51	508.35
16	I3	Intron	0	3.74	17.45	5.97	4.68	18.37	12.49	10.80
17	I3_SR1	SilentIntronRegion	0	3.77	17.59	6.02	4.72	18.51	12.58	10.89
18	ER4a	ExonRegion	0	69.23	184.92	106.35	138.98	580.68	127.58	351.97
19	E4a_E5a	KnownJunction	0	0.88	11.24	1.54	4.25	4.01	6.73	11.65
20	E4a_E6a	KnownJunction	0	111.66	188.00	169.41	109.91	552.37	112.32	406.30
21	ER5a	ExonRegion	0	3.51	10.10	4.24	5.03	11.66	3.57	12.05
22	E5_Da	NovelBoundary	1	604.41	242.12	716.62	178.53	601.66	171.17	188.11
23	E5a_E6a	KnownJunction	0	1.90	9.77	0.00	5.23	2.17	4.48	6.75
24	ER6a	ExonRegion	0	90.64	160.60	112.54	114.13	500.36	99.70	348.80
25	E6_Da	KnownBoundary	1	41.44	64.92	25.31	42.34	132.76	22.73	171.22
26	E6a_E7a	KnownJunction	0	48.25	72.93	68.43	35.79	353.49	37.44	152.34
27	ER6b	ExonRegion	0	61.48	97.57	43.97	73.02	157.37	53.87	216.13
28	E6_Db	NovelBoundary	0	50.84	81.31	33.71	78.84	64.76	39.50	118.43
29	I6	Intron	1	24.12	33.90	12.36	28.89	59.63	17.77	58.27
30	I6_AR1	ActiveIntronRegion	1	24.28	34.12	12.44	29.07	59.99	17.87	58.65
31	E7_Aa	NovelBoundary	0	34.85	42.27	22.62	40.39	121.33	25.73	86.71
32	ER7a	ExonRegion	0	57.90	67.65	49.08	51.55	285.92	40.51	132.63
33	IG31	Intergenic	0	4.97	4.01	3.42	3.99	0.90	14.41	3.33
34	IG31_SR1	SilentIntergenicRegion	0	4.32	4.30	2.03	3.69	0.55	8.61	3.27
35	IG31_AR1	ActiveIntergenicRegion	0	11.84	4.59	7.52	6.87	2.33	43.50	5.01
36	IG31_SR2	SilentIntergenicRegion	0	4.26	3.08	8.63	5.16	1.45	23.14	3.69
37	IG31_AR2	ActiveIntergenicRegion	0	2.18	2.24	0.83	0.46	0.98	9.53	0.75