Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SLC6A16	Gene	0	5.06	3.24	2.73	2.84	7.88	6.73	0.38
2	335875	Transcript	0	3.54	2.55	2.43	2.17	4.56	5.71	0.19
3	ER1a	ExonRegion	0	1.01	1.63	0.30	0.00	0.70	0.55	0.00
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER2a	ExonRegion	0	4.90	3.28	0.75	1.64	10.82	3.81	0.64
6	E2_Da	NovelBoundary	0	0.97	3.99	0.00	2.47	8.83	1.37	0.00
7	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	1.46	0.00	3.46	0.00
8	ER3a	ExonRegion	0	2.11	1.75	2.05	2.22	9.01	2.79	0.00
9	E3a_E4a	KnownJunction	0	1.57	0.00	0.86	0.00	0.00	2.68	0.00
10	E4_Aa	NovelBoundary	0	0.72	0.00	0.89	0.00	9.82	0.00	1.38
11	ER4a	ExonRegion	0	2.58	0.24	2.42	0.75	4.75	2.04	0.00
12	E4a_E5a	KnownJunction	0	0.00	2.26	3.79	0.00	1.11	1.18	0.00
13	E5_Aa	NovelBoundary	0	5.91	0.00	2.27	0.00	15.40	0.00	0.66
14	ER5a	ExonRegion	0	1.78	3.45	3.69	2.66	10.16	1.50	0.58
15	E5_Da	NovelBoundary	0	5.74	0.00	3.74	0.00	10.49	1.50	2.62
16	E5a_E6a	KnownJunction	0	0.92	0.00	0.73	0.00	0.00	0.00	0.00
17	I5	Intron	0	4.12	0.00	1.36	2.77	17.68	1.17	1.72
18	I5_AR1	ActiveIntronRegion	0	4.16	0.00	1.37	2.79	17.80	1.18	1.73
19	E6_Aa	NovelBoundary	0	8.36	1.63	0.89	1.68	34.19	6.43	0.57
20	ER6a	ExonRegion	0	5.23	0.85	2.74	0.53	8.91	0.00	0.46
21	E6_Da	NovelBoundary	0	12.97	2.84	3.36	2.63	27.04	7.13	0.80
22	E6a_E7a	KnownJunction	0	0.00	0.00	1.60	1.63	0.00	0.00	0.00
23	I6	Intron	0	7.10	1.51	4.29	0.52	26.24	3.05	1.67
24	I6_AR1	ActiveIntronRegion	0	7.16	1.52	4.33	0.52	26.51	3.08	1.69
25	E7_Aa	NovelBoundary	0	9.15	2.92	3.56	0.00	12.47	1.55	3.53
26	ER7a	ExonRegion	0	7.66	3.90	4.64	2.11	20.94	5.95	1.47
27	E7_Da	NovelBoundary	0	2.74	6.41	0.73	1.49	17.08	2.36	0.89
28	E7a_E8a	KnownJunction	0	0.58	1.42	0.70	0.00	0.00	7.80	0.00
29	I7_SR1	SilentIntronRegion	0	4.80	1.13	2.18	0.21	16.86	0.21	0.86
30	ER8a	ExonRegion	0	7.59	3.39	4.38	3.23	6.65	12.05	0.55
31	E8a_E9a	KnownJunction	0	3.61	6.91	4.25	3.20	5.26	13.32	0.00
32	ER9a	ExonRegion	0	8.88	2.35	3.22	6.23	6.09	15.52	0.26
33	E9a_E10a	KnownJunction	0	8.09	3.65	4.97	6.18	3.78	12.81	0.00
34	ER10a	ExonRegion	0	6.00	4.32	3.49	6.35	6.14	13.37	0.00
35	E10a_E11a	KnownJunction	0	6.78	7.30	2.82	1.63	1.87	8.31	0.00
36	ER11a	ExonRegion	0	5.45	4.20	4.50	3.44	2.32	13.83	0.31
37	E11a_E12a	KnownJunction	0	1.67	3.47	1.29	3.12	0.99	2.81	0.00
38	E12_Aa	NovelBoundary	0	6.78	0.00	4.93	7.15	4.31	8.15	0.00
39	ER12a	ExonRegion	0	5.09	4.24	2.81	3.48	5.39	7.44	0.14
40	IG4_AR4	ActiveIntergenicRegion	0	2.73	1.57	0.05	0.00	1.31	0.00	9.72