Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC138534.3	Gene	0	2.17	1.08	2.32	2.40	9.04	4.01	2.64
2	401705	Transcript	0	1.43	2.74	1.14	4.93	0.10	5.48	1.92
3	396737	Transcript	0	1.15	0.00	1.38	0.00	3.30	2.48	12.00
4	396734	Transcript	0	0.18	0.05	0.40	0.87	2.37	0.60	0.03
5	396735	Transcript	0	0.52	0.20	1.81	1.16	39.97	0.07	0.87
6	401593	Transcript	0	0.00	0.00	0.75	0.00	4.40	0.00	0.00
7	402807	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	396736	Transcript	0	0.00	0.00	0.00	0.00	1.11	0.00	0.00
9	ER1a	ExonRegion	0	2.87	3.85	2.28	8.21	0.20	10.96	2.42
10	E1_Da	NovelBoundary	0	25.64	14.37	20.85	23.52	49.47	8.42	49.19
11	E1a_E5a	KnownJunction	0	0.00	1.63	0.00	1.65	0.00	0.00	1.42
12	Ix	Intron	1	7.58	4.06	6.56	11.16	1.08	16.20	1.95
13	Ix_AR1	ActiveIntronRegion	0	4.53	4.89	5.66	11.41	1.18	13.14	2.14
14	Ix_SR1	SilentIntronRegion	0	9.24	3.66	7.09	11.12	1.04	17.93	1.87
15	Ix	Intron	1	9.91	8.19	10.64	15.36	1.56	31.56	1.26
16	Ix_SR1	SilentIntronRegion	0	9.96	8.25	10.71	15.45	1.57	31.76	1.27
17	Ix	Intron	0	8.33	4.66	11.11	7.39	2.99	13.81	3.10
18	Ix_SR1	SilentIntronRegion	0	9.15	4.86	12.10	7.86	3.14	14.57	3.43
19	Ix	Intron	0	7.12	3.12	9.43	6.30	1.63	9.26	2.40
20	Ix_AR1	ActiveIntronRegion	0	9.85	1.79	14.43	7.41	2.18	8.05	2.20
21	Ix_SR1	SilentIntronRegion	0	8.41	3.83	11.08	7.04	1.94	11.22	2.84
22	ER2a	ExonRegion	0	2.30	0.00	2.00	0.00	5.70	4.96	12.62
23	E2_Da	NovelBoundary	0	4.44	0.00	2.92	2.84	0.00	9.92	0.60
24	E2a_E5a	KnownJunction	0	0.00	0.00	0.76	0.00	0.90	0.00	11.38
25	ER3a	ExonRegion	0	0.37	0.10	0.25	0.33	0.16	1.19	0.05
26	E3_Da	NovelBoundary	0	2.67	1.10	0.00	1.25	9.45	5.25	2.42
27	E3a_E5a	KnownJunction	0	0.00	0.00	0.56	1.41	4.59	0.00	0.00
28	E4_Aa	NovelBoundary	0	3.94	13.61	2.85	8.26	12.93	8.55	5.02
29	ER4a	ExonRegion	0	0.08	0.00	0.46	0.33	11.05	0.00	0.14
30	E4_Da	NovelBoundary	0	13.17	8.14	10.09	4.39	14.48	5.63	3.14
31	E4a_E5a	KnownJunction	0	0.72	0.00	3.29	2.52	103.07	0.00	1.23
32	E4a_E6a	NovelJunction	0	0.00	0.00	0.62	0.00	13.97	0.00	0.00
33	E5_Ac	NovelBoundary	0	0.77	2.34	5.20	7.91	127.39	4.34	4.10
34	ER5a	ExonRegion	0	0.77	1.21	5.76	4.99	112.57	0.61	13.83
35	ER5b	ExonRegion	0	0.77	1.21	5.11	4.99	110.66	0.00	12.33
36	ER5c	ExonRegion	0	0.37	0.78	2.82	2.01	28.01	1.47	5.85
37	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER6a	ExonRegion	0	1.02	0.33	3.34	1.16	17.69	1.23	11.94
39	E6a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E6b_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	E6b_E7b	KnownJunction	0	0.00	0.00	0.75	0.00	4.40	0.00	0.00
42	E6b_E7c	KnownJunction	0	0.00	0.00	0.00	0.00	1.11	0.00	0.00
43	ER6b	ExonRegion	0	1.54	0.00	2.37	1.25	79.37	0.00	4.72
44	ER7a	ExonRegion	0	0.10	0.00	0.38	1.25	79.82	0.00	2.49
45	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	ER7b	ExonRegion	0	0.09	0.00	0.68	0.69	47.60	0.00	0.75
47	ER7c	ExonRegion	0	0.04	0.00	0.37	0.00	19.11	0.00	0.00
48	Ix	Intron	0	7.45	5.49	6.23	8.28	1.71	14.42	1.18
49	Ix_AR1	ActiveIntronRegion	0	9.45	7.10	8.11	10.93	2.14	18.64	1.56
50	Ix_SR2	SilentIntronRegion	0	5.96	2.73	2.29	0.00	0.40	7.92	0.00
51	ER8a	ExonRegion	0	0.04	1.08	0.17	1.65	3.14	0.00	1.27
52	E8_Da	KnownBoundary	0	0.60	3.21	2.30	2.82	2.19	0.00	3.00
53	ER8b	ExonRegion	0	3.47	4.23	4.88	3.32	9.99	9.71	2.74
54	E8_Db	KnownBoundary	0	1.54	7.93	1.68	8.07	5.07	14.53	1.32
55	E8_Dc	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	4.40	0.00
56	ER8c	ExonRegion	0	1.54	0.55	1.35	4.65	4.05	7.02	1.47
57	ER8d	ExonRegion	0	7.25	1.40	5.78	4.56	8.15	10.19	1.58
58	E8_Dd	KnownBoundary	0	15.14	5.12	11.21	7.07	22.22	16.88	2.74
59	ER8e	ExonRegion	0	14.62	1.97	12.98	10.26	29.73	13.38	6.62
60	ER8f	ExonRegion	0	0.77	0.61	1.69	0.62	5.80	0.20	1.24
61	IG26	Intergenic	0	5.24	4.90	5.70	5.85	1.62	10.31	1.78
62	IG26_AR1	ActiveIntergenicRegion	0	3.12	9.19	5.88	7.64	2.29	8.86	3.75
63	IG26_AR2	ActiveIntergenicRegion	0	4.85	11.44	11.26	15.44	6.04	18.37	4.90