Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CAPN12	Gene	0	6.10	13.25	3.75	17.56	8.72	3.79	10.41
2	328867	Transcript	0	2.07	9.30	1.11	6.93	8.71	1.04	5.32
3	IG13_AR1	ActiveIntergenicRegion	0	10.02	7.39	1.88	16.50	0.52	2.32	12.73
4	ER1a	ExonRegion	0	8.51	5.23	1.69	8.12	0.45	2.05	7.57
5	E1_Da	NovelBoundary	1	10.00	2.84	5.72	17.53	1.04	0.00	11.87
6	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	I1	Intron	0	6.02	5.88	2.50	11.01	0.24	0.54	5.62
8	I1_SR1	SilentIntronRegion	0	6.73	6.95	2.48	13.11	0.30	0.67	6.28
9	E2_Aa	NovelBoundary	1	16.21	12.58	5.83	40.75	0.00	5.23	11.71
10	ER2a	ExonRegion	0	1.58	0.02	0.49	1.28	1.54	0.00	0.67
11	E2_Da	NovelBoundary	0	15.27	14.16	3.09	23.62	0.00	5.65	16.18
12	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
13	E3_Aa	NovelBoundary	0	12.32	5.18	5.58	14.11	0.00	3.27	7.70
14	ER3a	ExonRegion	0	4.81	2.38	1.30	6.43	0.48	0.77	1.29
15	E3_Da	NovelBoundary	1	9.11	2.42	6.22	12.19	1.94	1.31	10.13
16	E3a_E4a	KnownJunction	0	0.00	0.00	0.50	0.00	0.00	0.00	0.00
17	I3_SR2	SilentIntronRegion	0	7.13	4.85	2.82	11.33	0.61	1.39	7.58
18	E4_Aa	NovelBoundary	0	8.33	6.94	6.39	17.96	0.00	4.98	10.00
19	ER4a	ExonRegion	0	8.21	5.39	5.58	11.90	0.92	2.09	6.86
20	E4_Da	NovelBoundary	1	17.84	2.50	5.81	15.98	0.00	3.32	16.84
21	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	I4	Intron	0	12.60	5.27	6.19	9.13	0.47	2.25	7.14
23	I4_SR1	SilentIntronRegion	0	12.63	5.28	6.21	9.15	0.47	2.25	7.15
24	E5_Aa	NovelBoundary	0	16.92	4.70	2.96	11.05	0.95	3.75	5.19
25	ER5a	ExonRegion	0	4.26	1.65	2.84	5.62	1.48	1.10	5.16
26	E5_Da	NovelBoundary	0	9.11	3.81	1.91	12.16	1.08	2.30	3.02
27	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	3.11	0.00	0.00
28	I5	Intron	0	6.19	3.35	3.68	9.27	0.79	2.19	8.15
29	I5_SR1	SilentIntronRegion	1	5.26	1.11	4.31	13.06	0.75	1.12	9.51
30	I5_AR1	ActiveIntronRegion	0	6.75	4.61	3.36	7.24	0.83	2.79	7.45
31	E6_Aa	NovelBoundary	0	4.06	7.88	2.86	21.21	1.82	4.45	13.16
32	ER6a	ExonRegion	0	0.00	1.17	1.28	1.21	2.13	0.00	1.26
33	E6_Da	NovelBoundary	0	1.69	8.07	2.62	19.45	2.01	13.43	7.58
34	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E7_Aa	NovelBoundary	1	4.24	4.39	3.15	23.73	1.04	2.95	10.38
36	ER7a	ExonRegion	0	0.46	3.16	0.02	4.38	0.00	1.04	0.62
37	E7_Da	NovelBoundary	0	4.39	5.73	0.86	11.13	0.00	7.83	4.56
38	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E8_Aa	NovelBoundary	0	3.52	5.20	2.54	15.58	2.35	3.32	7.88
40	ER8a	ExonRegion	0	0.01	1.17	0.66	1.21	1.14	0.00	0.64
41	E8_Da	NovelBoundary	0	12.13	14.71	5.40	10.08	0.00	2.76	12.12
42	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	I8	Intron	0	38.44	18.29	15.58	26.87	4.53	6.90	20.80
44	I8_SR1	SilentIntronRegion	0	41.29	20.29	15.92	25.08	4.01	8.19	21.48
45	I8_AR1	ActiveIntronRegion	0	37.04	16.94	15.80	29.64	5.22	5.90	20.85
46	E9_Aa	NovelBoundary	1	13.72	5.25	12.26	16.53	6.32	2.71	8.94
47	ER9a	ExonRegion	0	6.99	2.26	1.04	8.61	1.39	3.41	2.80
48	E9_Da	NovelBoundary	0	10.25	11.66	3.22	25.41	0.00	0.00	7.32
49	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
50	E10_Aa	NovelBoundary	0	7.09	11.24	3.55	17.42	0.00	2.87	4.49
51	ER10a	ExonRegion	0	0.66	2.79	0.15	2.43	0.27	0.40	0.87
52	E10_Da	NovelBoundary	0	4.57	8.33	0.76	4.20	2.10	0.00	2.61
53	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	I10	Intron	0	2.93	7.82	1.90	8.42	1.97	1.03	3.20
55	I10_AR1	ActiveIntronRegion	0	3.24	8.64	2.10	9.32	2.18	1.14	3.54
56	E11a_E12a	KnownJunction	0	0.67	5.94	0.66	5.82	5.09	0.00	0.00
57	ER11a	ExonRegion	0	0.00	4.25	0.00	4.36	3.10	0.00	0.11
58	E12_Aa	NovelBoundary	0	0.00	6.88	1.67	8.72	0.00	3.00	3.83
59	ER12a	ExonRegion	0	1.83	9.81	1.07	8.16	2.57	0.45	0.97
60	E12_Da	NovelBoundary	0	1.70	3.76	0.82	2.79	2.10	8.39	4.08
61	E12a_E13a	KnownJunction	0	0.00	5.44	1.55	5.47	0.99	1.18	0.00
62	I12_AR1	ActiveIntronRegion	0	0.30	4.40	0.41	0.00	10.10	0.00	2.43
63	E13_Aa	NovelBoundary	0	0.00	8.93	2.37	9.37	3.23	6.22	1.49
64	ER13a	ExonRegion	0	0.00	4.27	0.72	2.96	1.30	0.00	0.20
65	E13_Da	NovelBoundary	0	0.00	9.38	0.00	7.69	3.02	3.94	3.90
66	E13a_E14a	KnownJunction	0	0.00	3.26	0.00	0.00	1.18	0.00	0.59
67	E14_Aa	NovelBoundary	0	7.53	10.80	4.08	22.19	4.03	1.31	4.36
68	ER14a	ExonRegion	0	0.35	8.10	0.00	3.82	14.28	0.00	6.22
69	E14a_E15a	KnownJunction	0	0.88	12.03	0.00	6.53	23.26	0.00	12.21
70	E15_Aa	NovelBoundary	0	6.43	5.78	3.84	12.27	1.04	4.61	14.53
71	ER15a	ExonRegion	0	3.27	9.89	0.92	2.60	21.04	0.00	11.65
72	E15_Da	NovelBoundary	0	5.66	4.41	4.64	8.75	1.18	1.66	9.13
73	E15a_E16a	KnownJunction	1	2.62	12.51	1.78	0.00	15.51	0.00	7.12
74	E16_Aa	NovelBoundary	1	15.24	5.15	8.52	20.97	1.18	2.41	9.59
75	ER16a	ExonRegion	0	3.54	12.70	1.18	8.01	15.66	0.73	7.97
76	E16_Da	NovelBoundary	0	11.37	4.20	2.73	2.76	0.88	3.14	6.97
77	E16a_E17a	KnownJunction	0	2.50	14.34	0.00	10.51	16.25	2.79	7.41
78	I16	Intron	0	5.05	4.83	2.82	9.01	1.45	1.61	5.83
79	I16_AR1	ActiveIntronRegion	0	5.11	4.90	2.86	9.13	1.48	1.63	5.93
80	E17_Aa	NovelBoundary	0	13.55	2.76	5.14	4.31	0.00	2.36	8.10
81	ER17a	ExonRegion	0	1.78	13.83	0.68	5.82	15.19	2.18	7.61
82	E17_Da	NovelBoundary	0	6.28	10.96	4.57	21.89	0.00	4.18	4.27
83	E17a_E18a	KnownJunction	0	1.03	13.35	0.56	4.20	6.18	0.00	6.95
84	E18_Aa	NovelBoundary	0	3.92	20.47	3.65	21.05	1.13	5.57	17.33
85	ER18a	ExonRegion	0	3.15	21.47	1.83	10.95	28.32	5.07	14.97
86	E18_Da	NovelBoundary	1	17.94	9.01	8.26	25.57	1.91	4.85	11.85
87	E18a_E19a	KnownJunction	0	1.70	23.46	0.00	10.48	30.01	2.87	18.33
88	I18	Intron	0	19.11	8.96	10.42	15.91	3.78	3.95	15.12
89	I18_AR1	ActiveIntronRegion	0	10.39	7.51	3.65	10.94	1.42	2.89	11.98
90	I18_SR1	SilentIntronRegion	0	23.37	9.90	13.11	17.45	4.06	4.14	16.71
91	I18_AR2	ActiveIntronRegion	0	8.26	5.41	6.19	14.49	6.55	5.44	12.32
92	I18_AR3	ActiveIntronRegion	0	5.02	5.69	3.11	15.86	5.73	3.29	7.09
93	E19_Aa	NovelBoundary	1	11.13	14.53	6.21	45.57	2.03	6.89	18.56
94	ER19a	ExonRegion	0	3.53	36.62	3.38	31.70	27.59	4.48	15.15
95	E19_Da	NovelBoundary	1	13.75	4.97	8.52	29.26	1.06	2.92	10.82
96	E19a_E20a	KnownJunction	1	3.47	39.04	1.16	18.10	32.14	0.00	8.28
97	E20_Aa	NovelBoundary	0	15.84	17.37	7.69	40.64	2.24	19.03	22.60
98	ER20a	ExonRegion	0	3.79	35.93	1.44	20.80	30.57	0.08	14.78
99	E20_Da	NovelBoundary	1	12.28	9.17	7.60	63.23	3.18	10.93	18.06
100	E20a_E21a	KnownJunction	0	2.64	37.07	1.44	20.67	31.26	0.00	21.34
101	I20	Intron	0	0.00	4.28	0.94	10.95	0.48	1.04	4.70
102	I20_SR1	SilentIntronRegion	0	0.00	2.35	0.68	9.90	0.00	1.23	2.99
103	I20_SR2	SilentIntronRegion	0	0.00	4.86	1.12	12.47	0.70	1.23	5.40
104	E21_Aa	NovelBoundary	0	9.71	22.65	5.62	47.92	1.11	10.16	17.61
105	ER21a	ExonRegion	0	12.73	32.95	11.64	51.79	20.26	11.97	28.32