Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RTN2	Gene	0	22.32	11.82	22.84	17.42	42.61	16.25	43.77
2	344680	Transcript	1	2.01	3.32	10.26	1.58	14.43	0.83	22.89
3	245923	Transcript	0	24.66	9.57	13.49	5.61	27.49	5.20	14.81
4	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER1b	ExonRegion	0	1.05	2.43	0.99	1.61	1.99	0.92	3.36
6	E1a_E2a	KnownJunction	1	3.86	0.00	5.46	4.04	6.43	1.58	19.40
7	Ix	Intron	0	7.12	3.12	9.43	6.30	1.63	9.26	2.40
8	Ix_SR1	SilentIntronRegion	0	8.41	3.83	11.08	7.04	1.94	11.22	2.84
9	Ix_AR1	ActiveIntronRegion	0	9.85	1.79	14.43	7.41	2.18	8.05	2.20
10	E2_Aa	NovelBoundary	1	6.33	0.00	6.31	9.81	1.91	10.59	3.74
11	ER2a	ExonRegion	1	4.73	2.13	5.89	6.18	6.57	2.92	21.75
12	E2_Da	NovelBoundary	1	6.08	4.12	7.87	2.33	0.00	13.43	0.83
13	E2a_E3a	KnownJunction	0	5.37	5.94	7.47	8.59	6.55	7.64	19.20
14	E3_Aa	NovelBoundary	1	7.88	1.21	3.68	11.35	0.00	12.57	0.00
15	ER3a	ExonRegion	0	10.09	9.98	18.99	16.77	22.63	14.14	37.70
16	E3_Da	NovelBoundary	0	7.98	5.49	6.29	11.59	1.18	11.47	1.68
17	E3a_E4a	KnownJunction	1	9.71	6.41	27.06	15.17	66.35	0.00	65.91
18	E4_Aa	NovelBoundary	1	5.12	1.63	4.87	7.50	0.00	15.76	0.79
19	ER4a	ExonRegion	0	17.31	11.38	28.68	24.71	57.51	12.97	61.35
20	E4_Da	NovelBoundary	1	11.03	9.83	16.45	31.05	5.67	24.92	9.76
21	E4a_E5a	KnownJunction	0	4.21	0.00	6.27	0.00	5.88	0.00	13.13
22	E4a_E6a	KnownJunction	1	4.02	6.65	20.52	3.17	28.86	1.66	45.77
23	Ix	Intron	0	8.33	4.66	11.11	7.39	2.99	13.81	3.10
24	Ix_SR1	SilentIntronRegion	0	9.15	4.86	12.10	7.86	3.14	14.57	3.43
25	E5_Aa	NovelBoundary	1	26.50	12.69	24.10	18.18	2.12	41.89	3.51
26	ER5a	ExonRegion	1	26.77	11.99	20.63	12.60	37.43	15.61	14.13
27	E5_Da	NovelBoundary	1	7.01	5.04	8.54	11.35	3.27	31.81	0.67
28	E5a_E6a	KnownJunction	1	42.99	16.71	13.58	4.23	39.17	0.00	17.18
29	Ix	Intron	1	9.91	8.19	10.64	15.36	1.56	31.56	1.26
30	Ix_SR1	SilentIntronRegion	0	9.96	8.25	10.71	15.45	1.57	31.76	1.27
31	E6_Aa	NovelBoundary	1	5.62	6.54	6.29	16.85	4.13	21.39	6.39
32	ER6a	ExonRegion	0	51.98	20.60	47.50	39.10	99.64	31.86	88.91
33	E6_Da	NovelBoundary	1	14.79	5.10	10.56	12.00	2.95	41.35	3.32
34	E6a_E7a	KnownJunction	0	56.38	20.81	57.37	21.29	214.58	9.49	105.26
35	Ix	Intron	1	7.58	4.06	6.56	11.16	1.08	16.20	1.95
36	Ix_SR1	SilentIntronRegion	0	9.24	3.66	7.09	11.12	1.04	17.93	1.87
37	Ix_AR1	ActiveIntronRegion	0	4.53	4.89	5.66	11.41	1.18	13.14	2.14
38	E7_Aa	NovelBoundary	1	10.25	0.00	6.31	7.96	0.00	11.04	0.00
39	ER7a	ExonRegion	0	35.43	18.41	36.61	23.75	101.75	11.05	98.06
40	E7_Da	NovelBoundary	0	7.73	8.64	8.84	20.21	0.00	22.78	5.39
41	E7a_E8a	KnownJunction	1	40.16	17.81	41.37	25.38	78.79	5.39	86.81
42	E8_Aa	NovelBoundary	1	7.24	8.49	15.19	16.31	0.97	37.09	0.00
43	ER8a	ExonRegion	0	56.91	21.90	51.12	24.48	114.98	13.42	108.02
44	E8_Da	NovelBoundary	1	10.88	9.25	7.62	8.86	0.00	39.80	1.76
45	E8a_E9a	KnownJunction	0	62.05	20.31	45.96	17.58	159.76	7.24	106.77
46	I8	Intron	1	2.94	3.88	5.58	3.18	0.00	17.92	0.86
47	I8_AR1	ActiveIntronRegion	1	2.99	3.95	5.67	3.21	0.00	18.17	0.88
48	E9_Aa	NovelBoundary	1	5.14	12.01	15.46	16.15	2.12	28.60	2.08
49	ER9a	ExonRegion	1	63.32	28.90	44.32	19.63	107.45	8.40	112.50
50	E9_Da	NovelBoundary	1	9.60	5.86	16.31	11.84	0.00	43.98	1.66
51	E9a_E10a	KnownJunction	1	47.28	31.21	29.50	15.44	64.73	9.65	95.17
52	I9	Intron	1	7.60	4.53	9.53	13.94	0.81	36.85	1.37
53	I9_SR1	SilentIntronRegion	1	7.64	4.56	9.58	14.02	0.81	37.06	1.38
54	E10_Aa	NovelBoundary	1	21.96	11.43	24.77	25.52	0.88	63.84	0.00
55	ER10a	ExonRegion	1	41.22	25.04	25.74	16.80	56.77	7.94	78.17
56	E10_Da	NovelBoundary	1	9.91	11.48	19.76	16.77	0.00	69.81	0.64
57	E10a_E11a	KnownJunction	0	24.90	10.90	23.25	11.73	49.19	9.73	47.28
58	I10	Intron	1	7.98	5.90	11.68	22.49	1.39	43.14	2.13
59	I10_AR1	ActiveIntronRegion	1	8.03	5.94	11.77	22.66	1.40	43.46	2.14
60	E11_Aa	NovelBoundary	0	9.40	13.37	4.58	11.46	0.00	19.56	0.73
61	ER11a	ExonRegion	1	20.54	9.49	17.17	13.88	23.03	26.66	23.47
62	IG25	Intergenic	0	63.01	41.44	127.78	163.11	3.57	411.74	3.02
63	IG25_SR6	SilentIntergenicRegion	0	14.32	6.31	11.01	9.71	3.38	24.17	2.08
64	IG25_SR5	SilentIntergenicRegion	0	36.48	24.42	73.94	84.76	7.26	208.49	3.66
65	IG25_AR5	ActiveIntergenicRegion	0	101.04	113.39	240.51	385.98	0.77	853.89	8.34
66	IG25_SR4	SilentIntergenicRegion	0	101.80	66.85	198.38	280.57	0.33	701.12	2.17
67	IG25_AR4	ActiveIntergenicRegion	0	47.98	20.57	102.86	152.20	0.00	356.14	0.45
68	IG25_AR3	ActiveIntergenicRegion	0	103.18	51.80	228.13	232.04	0.00	688.71	2.57
69	IG25_SR2	SilentIntergenicRegion	0	16.14	7.07	32.64	31.85	0.00	82.48	0.92
70	IG25_SR1	SilentIntergenicRegion	0	64.34	49.98	125.38	173.72	0.00	406.91	2.19
71	IG25_AR1	ActiveIntergenicRegion	0	24.66	20.60	47.02	82.58	0.00	185.24	0.71