Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HKR1	Gene	0	56.41	92.38	43.61	67.47	93.64	81.65	49.60
2	324411	Transcript	1	17.26	10.51	6.07	4.97	7.03	5.76	5.80
3	392153	Transcript	0	23.75	16.37	20.32	5.17	9.22	5.95	15.46
4	360010	Transcript	0	0	0	0	0	0	0	0
5	IG32_AR7	ActiveIntergenicRegion	0	1.93	0.55	0.95	0.35	0.00	0.21	10.00
6	IG32_AR13	ActiveIntergenicRegion	0	4.19	0.45	4.69	0.25	0.39	0.57	21.92
7	IG32_AR19	ActiveIntergenicRegion	0	2.98	5.59	9.08	2.45	0.09	0.00	0.54
8	IG32_AR42	ActiveIntergenicRegion	0	6.48	2.78	1.90	0.66	14.21	3.45	1.07
9	IG32_SR30	SilentIntergenicRegion	0	4.86	0.38	1.07	1.18	13.03	1.55	1.69
10	IG32_AR45	ActiveIntergenicRegion	0	14.38	32.92	10.83	34.10	32.16	26.64	12.28
11	IG32_AR46	ActiveIntergenicRegion	0	13.08	2.79	3.28	0.00	10.58	3.60	0.88
12	IG32_SR33	SilentIntergenicRegion	0	16.27	6.22	3.62	0.00	3.29	3.06	6.26
13	IG32_AR48	ActiveIntergenicRegion	0	7.87	2.27	5.03	1.94	14.13	1.71	3.43
14	IG32_SR36	SilentIntergenicRegion	0	9.94	6.37	6.48	0.92	4.92	1.80	4.30
15	IG32_SR38	SilentIntergenicRegion	0	41.66	29.74	17.55	10.90	56.62	14.30	18.54
16	IG32_AR50	ActiveIntergenicRegion	0	64.93	39.08	26.87	22.96	115.81	18.39	23.89
17	IG32_SR39	SilentIntergenicRegion	0	44.04	33.62	19.40	20.52	65.28	14.75	18.69
18	IG32_AR51	ActiveIntergenicRegion	0	53.04	36.27	17.90	16.67	45.63	11.84	14.44
19	IG32_SR40	SilentIntergenicRegion	0	27.78	10.73	9.53	6.30	35.56	3.69	6.64
20	IG32_AR53	ActiveIntergenicRegion	0	19.43	17.00	14.96	8.61	35.66	9.66	9.82
21	IG32_SR41	SilentIntergenicRegion	0	7.95	5.23	4.98	2.69	10.87	3.29	3.39
22	IG32_AR55	ActiveIntergenicRegion	0	21.50	20.06	12.87	18.26	42.70	14.51	15.64
23	IG32_SR42	SilentIntergenicRegion	0	9.96	1.43	3.71	6.01	13.59	1.28	7.16
24	ER1a	ExonRegion	1	24.08	12.14	8.12	5.30	21.77	5.85	11.78
25	E1a_E2a	KnownJunction	0	3.10	9.38	2.33	1.19	4.54	1.53	2.68
26	E2_Aa	NovelBoundary	1	10.10	20.83	13.38	8.61	3.30	4.93	2.64
27	ER2a	ExonRegion	1	18.66	16.71	7.45	8.31	4.66	10.09	6.43
28	E2_Ab	KnownBoundary	1	46.80	24.67	20.18	17.80	4.68	17.82	12.68
29	ER2b	ExonRegion	1	37.70	16.93	16.51	11.50	5.57	11.61	9.57
30	E2a_E3a	KnownJunction	1	29.76	8.56	6.25	7.15	0.00	3.22	0.63
31	E2a_E4a	KnownJunction	0	23.75	16.37	20.32	5.17	9.22	5.95	15.46
32	I2_AR1	ActiveIntronRegion	1	16.59	7.39	4.36	1.16	9.96	2.04	10.92
33	E3_Aa	NovelBoundary	1	10.31	5.15	5.35	0.00	17.84	0.00	15.64
34	ER3a	ExonRegion	0	25.29	14.75	10.72	5.82	7.29	10.20	12.36
35	E3_Ab	KnownBoundary	0	27.64	23.33	14.73	6.04	10.72	12.17	22.66
36	ER3b	ExonRegion	0	19.82	17.08	8.11	8.78	9.94	6.34	14.61
37	E3_Da	NovelBoundary	1	26.04	26.38	12.29	3.47	5.49	6.14	17.05
38	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	1.27	0.00	1.58	0.00
39	I3	Intron	1	15.21	11.78	6.97	3.64	8.10	2.73	13.56
40	I3_SR1	SilentIntronRegion	1	28.51	18.30	11.86	7.45	10.84	2.86	22.34
41	I3_AR2	ActiveIntronRegion	1	24.02	18.34	13.26	6.36	7.84	4.67	20.82
42	I3_AR3	ActiveIntronRegion	1	15.07	15.71	6.24	4.72	8.69	3.14	13.03
43	I3_AR4	ActiveIntronRegion	1	14.01	8.33	6.12	2.31	8.29	2.10	13.10
44	ER4a	ExonRegion	0	37.25	55.39	29.24	32.50	56.47	38.01	32.94
45	E4a_E5a	KnownJunction	0	59.45	79.05	42.61	48.38	58.07	59.52	39.58
46	ER5a	ExonRegion	0	48.92	91.03	49.00	57.09	72.46	79.72	41.83
47	E5a_E6a	KnownJunction	0	36.92	65.60	47.05	45.32	32.62	60.41	27.77
48	ER6a	ExonRegion	0	62.97	106.63	49.59	79.26	109.44	95.67	56.84
49	ER6b	ExonRegion	0	2.69	1.52	1.52	2.03	3.95	3.68	0.93