Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C19orf55	Gene	0	31.98	28.60	31.47	19.54	29.44	18.57	47.14
2	301165	Transcript	0	23.23	15.63	17.16	11.31	17.75	9.95	25.10
3	396911	Transcript	0	9.62	9.36	16.01	5.21	25.82	1.98	18.85
4	396908	Transcript	0	10.09	8.46	8.44	1.08	5.24	5.40	9.53
5	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER2a	ExonRegion	0	4.31	4.27	6.83	3.87	14.78	0.99	8.94
7	E2_Da	NovelBoundary	1	11.13	10.72	9.50	5.63	5.19	0.00	4.63
8	E2a_E3b	KnownJunction	0	14.92	14.45	25.19	6.56	36.86	2.97	28.76
9	E2a_E4a	NovelJunction	1	1.70	4.73	4.24	4.61	0.00	17.53	1.48
10	E2a_E5a	NovelJunction	0	1.03	7.72	5.86	4.50	4.56	5.55	1.63
11	I2	Intron	0	14.16	10.62	15.01	8.03	5.41	6.49	8.45
12	I2_AR1	ActiveIntronRegion	0	9.61	6.83	13.43	6.13	4.09	2.15	6.38
13	I2_SR1	SilentIntronRegion	0	23.02	18.00	18.15	11.73	8.00	14.84	12.50
14	E3_Aa	NovelBoundary	0	10.87	15.24	11.04	6.77	9.31	5.74	12.38
15	E3_Ab	NovelBoundary	1	32.81	15.21	27.35	14.98	7.42	8.71	10.43
16	ER3a	ExonRegion	0	2.31	3.10	5.42	0.55	4.95	4.36	2.62
17	ER3b	ExonRegion	0	20.63	18.46	29.09	11.51	12.42	6.37	30.03
18	E3a_E4a	KnownJunction	1	17.82	20.68	26.94	11.51	5.44	2.97	30.07
19	ER4a	ExonRegion	0	23.97	27.45	27.90	21.66	23.89	18.83	41.85
20	E4a_E5a	KnownJunction	0	27.32	42.90	23.71	41.12	29.16	21.73	42.76
21	ER5a	ExonRegion	0	33.49	44.54	39.70	31.60	29.65	31.10	54.77
22	E5_Da	NovelBoundary	1	2.77	10.22	5.49	21.10	4.22	4.56	7.98
23	E5a_E6a	KnownJunction	0	26.95	22.62	25.95	16.96	25.43	13.48	51.88
24	E5a_E6b	KnownJunction	0	30.41	23.83	34.22	14.20	32.90	16.16	33.06
25	ER6a	ExonRegion	0	37.65	29.46	43.18	22.45	41.50	17.78	69.65
26	ER6b	ExonRegion	0	59.09	59.22	66.77	28.53	49.31	37.61	102.23
27	E6_Da	NovelBoundary	0	12.85	7.07	12.32	11.46	12.08	10.69	14.35
28	E6a_E7a	KnownJunction	0	36.77	57.93	46.86	24.68	27.62	31.62	71.07
29	E7_Aa	NovelBoundary	1	22.40	16.68	32.22	10.92	5.51	9.67	9.57
30	ER7a	ExonRegion	0	40.59	52.14	55.77	29.46	33.27	35.83	77.40
31	E7_Da	NovelBoundary	0	7.08	5.99	5.72	4.61	8.76	9.41	5.39
32	E7a_E8a	KnownJunction	0	51.91	49.55	47.77	24.87	28.31	38.67	71.84
33	E7a_E8b	KnownJunction	0	9.50	10.51	5.52	5.63	21.28	10.67	16.67
34	E7a_E9a	NovelJunction	1	2.37	0.00	3.15	0.00	5.46	2.92	22.46
35	E8_Aa	NovelBoundary	0	4.82	7.83	6.25	1.33	5.35	3.99	7.04
36	ER8a	ExonRegion	0	46.29	54.74	42.46	26.41	35.99	32.96	68.83
37	E8_Ab	KnownBoundary	0	51.42	60.00	41.73	30.99	46.52	32.94	70.18
38	ER8b	ExonRegion	0	37.84	43.37	39.29	22.08	42.08	36.44	61.20
39	E8a_E9a	KnownJunction	1	30.63	35.49	39.55	22.40	41.43	51.80	59.58
40	ER9a	ExonRegion	0	14.57	22.68	17.52	17.27	22.26	15.91	40.15
41	E9_Da	KnownBoundary	0	0.00	4.76	2.20	0.00	0.00	2.41	1.43
42	E9a_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER9b	ExonRegion	0	20.41	26.75	18.08	19.69	16.66	14.47	37.38
44	E9_Ab	KnownBoundary	0	18.43	24.85	14.10	21.70	0.90	15.79	33.44
45	ER9c	ExonRegion	0	11.71	21.83	11.23	15.35	10.90	13.71	26.49
46	E9_Db	NovelBoundary	0	22.45	17.50	15.78	6.94	8.99	8.50	14.30
47	E9b_E9c	KnownJunction	1	17.87	13.82	11.47	1.60	5.53	6.43	16.44
48	E9c_E10a	KnownJunction	0	19.03	11.98	12.70	16.09	8.25	8.60	20.34
49	ER9d	ExonRegion	0	23.05	18.71	13.68	6.23	7.77	7.85	17.67
50	ER9e	ExonRegion	0	25.07	18.98	15.35	9.35	8.54	8.63	21.05
51	ER10a	ExonRegion	0	21.14	18.95	12.83	10.14	16.69	9.63	22.59
52	E10_Da	NovelBoundary	1	7.61	11.45	6.21	16.63	6.02	4.88	21.57
53	E10a_E11a	KnownJunction	0	14.84	12.56	12.70	10.16	17.01	7.80	18.43
54	I10	Intron	0	8.83	12.65	7.56	7.35	4.41	10.57	12.53
55	I10_AR1	ActiveIntronRegion	1	8.93	12.80	7.65	7.43	4.46	10.68	12.67
56	E11_Aa	NovelBoundary	1	4.87	11.51	6.05	5.72	8.76	8.23	21.87
57	ER11a	ExonRegion	0	24.65	22.35	24.52	13.92	22.73	17.98	40.61
58	E11_Da	KnownBoundary	0	17.52	24.59	18.75	22.76	14.87	16.05	29.49
59	ER11b	ExonRegion	0	44.73	40.79	48.82	30.11	46.22	29.03	78.35
60	E11_Db	KnownBoundary	0	45.76	58.03	46.10	31.91	65.56	29.29	73.92
61	ER11c	ExonRegion	0	54.16	20.68	44.11	13.63	45.54	13.26	42.75
62	E11_Dc	NovelBoundary	0	3758.11	2333.46	2511.88	1766.94	1188.17	1686.54	1637.98
63	E11c_E12a	KnownJunction	1	48.10	27.61	17.66	26.01	4.98	15.09	45.47
64	Ix	Intron	0	1.01	0.69	0.66	1.32	13.88	1.30	0.55
65	Ix_SR1	SilentIntronRegion	0	1.01	0.70	0.67	1.32	13.91	1.31	0.55
66	E12_Aa	NovelBoundary	1	150.46	86.67	82.16	47.98	71.83	56.28	47.38
67	ER12a	ExonRegion	0	0.05	0.04	0.51	0.00	2.93	0.02	0.38