Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DMKN	Gene	0	31.36	23.67	46.81	40.12	97.35	3.71	270.67
2	339686	Transcript	0	44.06	39.27	69.16	75.34	185.96	7.20	481.34
3	379073	Transcript	1	17.04	7.86	26.31	12.39	31.05	0.00	70.11
4	392207	Transcript	0	0	0	0	0	0	0	0
5	402589	Transcript	0	53.92	38.36	89.64	67.04	296.68	1.22	68.65
6	392206	Transcript	1	22.30	27.63	37.39	42.53	83.53	2.60	90.93
7	379075	Transcript	0	1.80	0.00	1.37	0.00	4.20	0.00	1.63
8	408915	Transcript	0	0.00	0.00	0.00	0.00	0.69	0.00	2.41
9	379074	Transcript	0	0	0	0	0	0	0	0
10	ER1a	ExonRegion	1	7.48	1.24	0.00	0.53	1.66	0.00	317.03
11	E1_Ab	KnownBoundary	1	3.29	1.58	0.75	0.00	0.00	0.00	236.80
12	ER1b	ExonRegion	1	23.59	1.81	0.58	0.22	5.05	0.00	723.52
13	E1a_E2a	KnownJunction	1	24.20	2.84	0.65	0.00	3.30	0.00	752.87
14	ER2a	ExonRegion	1	26.67	1.02	1.26	0.00	3.43	0.00	796.43
15	E2a_E3a	KnownJunction	1	14.95	2.55	0.60	0.00	2.07	0.00	733.53
16	ER3a	ExonRegion	1	18.95	3.75	1.02	0.00	3.14	0.00	717.70
17	E3a_E4a	KnownJunction	1	18.11	3.02	0.86	0.00	3.27	0.00	610.48
18	ER4a	ExonRegion	1	13.68	2.12	0.98	0.00	2.89	0.00	600.59
19	E4a_E5a	KnownJunction	1	11.38	1.58	0.72	0.00	1.89	0.00	590.12
20	ER5a	ExonRegion	1	4.95	1.77	0.40	0.00	1.78	0.00	297.03
21	E5a_E7a	KnownJunction	1	7.56	0.00	1.26	0.00	2.35	0.00	399.39
22	E6_Aa	NovelBoundary	1	29.17	45.03	63.00	112.48	441.02	6.30	112.83
23	ER6a	ExonRegion	1	35.97	23.30	67.43	39.94	373.21	0.78	38.77
24	E6_Da	NovelBoundary	0	68.50	55.17	149.47	134.16	243.37	5.79	95.39
25	E6a_E7a	KnownJunction	0	71.87	53.41	111.84	94.14	220.15	1.66	98.53
26	I6	Intron	1	5.84	13.16	23.96	26.97	29.44	2.88	13.70
27	I6_AR1	ActiveIntronRegion	1	5.90	13.35	24.22	27.33	29.68	2.91	13.85
28	E7_Aa	NovelBoundary	1	24.68	44.74	63.29	111.94	25.06	6.54	55.91
29	ER7a	ExonRegion	0	45.78	51.11	81.22	74.89	127.89	8.17	372.18
30	E7a_E8a	KnownJunction	0	67.73	60.77	131.36	100.45	211.05	12.17	463.44
31	E7a_E9b	NovelJunction	0	2.99	1.63	12.33	9.59	6.48	0.00	6.31
32	E7a_E9e	NovelJunction	0	2.07	2.92	5.20	3.66	5.12	0.00	17.48
33	E7a_E9f	NovelJunction	0	36.22	56.83	75.11	112.62	223.45	4.64	177.92
34	E7a_E10a	NovelJunction	1	3.99	12.37	20.35	42.07	5.30	1.45	5.02
35	I7	Intron	0	1.47	8.27	4.74	8.54	8.10	0.00	5.50
36	I7_AR1	ActiveIntronRegion	0	1.48	8.34	4.77	8.62	8.17	0.00	5.54
37	E8_Aa	NovelBoundary	0	13.69	10.43	14.77	5.88	20.91	0.00	16.07
38	ER8a	ExonRegion	1	97.85	86.25	177.86	136.41	269.22	14.74	511.02
39	E8a_E9b	KnownJunction	1	31.33	18.07	57.84	35.81	50.90	0.00	153.56
40	E8a_E9e	NovelJunction	0	7.31	6.31	8.68	7.45	15.03	0.00	46.46
41	E8a_E9f	KnownJunction	0	75.02	67.15	138.17	95.66	353.40	10.67	334.75
42	I8	Intron	1	6.61	4.78	14.65	4.22	16.68	0.49	23.72
43	I8_AR1	ActiveIntronRegion	1	5.18	4.73	12.62	4.73	15.00	0.24	19.48
44	I8_SR2	SilentIntronRegion	0	10.32	6.32	21.37	5.00	22.36	0.98	34.83
45	E9_Aa	NovelBoundary	0	8.61	4.26	13.92	3.47	24.94	0.00	37.06
46	ER9a	ExonRegion	0	7.57	5.14	16.63	6.89	20.32	0.88	31.72
47	E9_Ab	KnownBoundary	1	3.52	6.12	13.97	3.09	12.98	0.00	35.70
48	ER9b	ExonRegion	1	23.16	16.24	42.79	18.28	59.58	0.39	116.92
49	E9_Da	KnownBoundary	0	1.62	3.07	12.37	1.63	24.11	1.13	32.45
50	E9a_E9c	KnownJunction	1	11.25	3.05	12.47	1.35	25.66	0.00	32.99
51	E9a_E9e	NovelJunction	0	21.76	4.89	32.41	4.33	29.12	1.55	56.15
52	E9a_E9f	NovelJunction	1	25.30	22.91	55.58	32.51	94.42	3.00	105.64
53	ER9c	ExonRegion	0	4.43	5.42	10.67	4.34	17.63	0.11	43.78
54	E9_Ac	KnownBoundary	0	9.06	5.81	12.01	8.05	11.57	0.00	30.54
55	ER9d	ExonRegion	1	19.43	9.03	26.14	4.14	30.59	0.00	54.88
56	E9_Db	KnownBoundary	0	6.13	2.60	15.32	1.68	21.53	0.00	23.85
57	E9b_E9e	KnownJunction	1	8.55	2.47	8.61	0.00	16.60	0.00	23.79
58	E9b_E9f	NovelJunction	0	3.10	7.70	3.85	8.21	15.21	1.66	13.69
59	ER9e	ExonRegion	1	12.87	5.49	16.65	4.54	27.79	1.54	35.67
60	E9_Ad	KnownBoundary	0	5.52	4.68	5.37	7.02	24.04	0.00	28.02
61	ER9f	ExonRegion	1	10.90	6.90	13.05	3.59	28.04	0.00	39.58
62	E9_Dc	KnownBoundary	1	12.98	6.80	17.12	1.46	41.93	0.00	40.24
63	E9c_E9e	KnownJunction	0	1.80	0.00	1.37	0.00	4.20	0.00	1.63
64	ER9g	ExonRegion	0	6.80	4.45	10.31	9.65	28.74	0.00	38.43
65	E9_Ae	KnownBoundary	0	1.80	2.57	2.04	9.54	14.48	0.00	19.16
66	ER9h	ExonRegion	1	32.65	16.91	47.55	21.33	135.48	2.14	137.18
67	E9_Dd	KnownBoundary	0	4.21	3.07	12.55	10.51	26.93	0.00	39.40
68	E9d_E9f	KnownJunction	1	35.02	20.91	58.73	18.69	182.99	2.97	167.16
69	ER9i	ExonRegion	0	3.57	6.40	11.61	6.93	26.05	0.22	35.86
70	E9_Af	KnownBoundary	1	4.34	10.96	16.08	9.24	36.75	0.00	42.51
71	ER9j	ExonRegion	1	270.83	168.37	421.17	219.70	767.31	29.24	918.75
72	E9e_E10a	KnownJunction	1	328.69	213.82	490.07	286.89	773.49	37.12	1042.78
73	ER10a	ExonRegion	1	303.15	237.35	539.63	364.32	741.91	33.43	1213.33
74	E10a_E11a	KnownJunction	1	34.08	85.46	68.49	144.94	146.02	4.77	198.99
75	E10a_E12a	KnownJunction	1	131.47	93.42	266.05	174.82	508.22	20.10	687.84
76	E10a_E13a	NovelJunction	1	5.29	0.00	10.12	9.35	30.91	0.00	23.04
77	E10a_E15a	NovelJunction	1	0.72	5.41	24.83	17.01	13.97	1.34	4.04
78	ER11a	ExonRegion	1	86.77	81.05	127.34	120.41	318.16	10.71	252.07
79	ER12a	ExonRegion	1	124.95	113.86	250.82	209.71	394.68	17.85	698.94
80	E12a_E13a	KnownJunction	1	81.95	92.32	183.44	196.22	376.68	14.04	541.01
81	E12a_E15a	NovelJunction	1	0.00	2.60	1.78	24.63	1.98	0.00	0.00
82	ER13a	ExonRegion	0	138.89	125.79	246.26	281.40	504.39	18.57	756.88
83	E13a_E15a	KnownJunction	0	151.39	110.31	225.71	258.77	545.96	17.37	699.76
84	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	0.69	0.00	2.41
85	ER14b	ExonRegion	0	0.03	0.03	0.05	0.05	0.55	0.00	2.67
86	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
87	ER15a	ExonRegion	0	191.69	134.60	315.21	299.79	571.03	23.24	944.80
88	E15_Da	NovelBoundary	0	3.62	5.36	6.08	12.22	29.92	0.00	13.54
89	E15a_E16a	KnownJunction	0	19.19	16.24	21.91	53.61	134.51	1.66	43.81
90	E15a_E17a	KnownJunction	0	125.37	97.73	248.59	194.60	429.68	21.41	769.77
91	I15	Intron	1	0.86	0.00	2.82	8.36	21.68	2.47	6.24
92	I15_AR1	ActiveIntronRegion	1	0.88	0.00	2.86	8.50	22.01	2.52	6.33
93	E16_Aa	NovelBoundary	0	23.77	6.52	25.69	4.88	32.25	0.00	19.28
94	ER16a	ExonRegion	0	39.30	33.52	45.16	71.76	190.68	3.59	81.38
95	E16a_E17a	KnownJunction	0	40.32	36.96	48.92	50.77	214.05	3.32	82.82
96	I16	Intron	0	1.38	1.14	4.39	2.31	28.02	0.58	10.39
97	I16_AR1	ActiveIntronRegion	0	1.39	1.15	4.42	2.31	28.18	0.58	10.45
98	E17_Aa	NovelBoundary	0	1.89	11.43	6.44	10.89	55.37	0.00	17.66
99	ER17a	ExonRegion	0	136.56	156.19	264.94	295.25	506.61	25.17	826.21
100	E17a_E18a	KnownJunction	0	78.13	97.26	163.38	221.14	352.80	16.70	510.27
101	I17	Intron	1	4.99	5.05	13.55	14.53	18.23	0.09	13.98
102	I17_AR1	ActiveIntronRegion	1	5.00	5.06	13.58	14.56	18.26	0.09	14.01
103	E18a_E19a	KnownJunction	0	70.08	65.99	160.55	184.08	453.08	15.62	485.28
104	ER18a	ExonRegion	0	108.73	119.11	219.25	274.96	477.27	25.08	699.75
105	ER19a	ExonRegion	0	124.69	97.95	219.33	223.15	481.27	21.25	829.93
106	E19_Da	NovelBoundary	1	7.91	31.18	33.57	82.82	73.54	2.28	86.81
107	E19a_E20a	KnownJunction	1	39.20	8.93	45.73	10.94	101.13	4.45	138.66
108	E19a_E21a	KnownJunction	0	80.65	77.29	138.31	150.14	370.25	14.39	645.64
109	I19	Intron	0	5.12	5.54	12.46	13.32	61.88	1.93	28.63
110	I19_AR1	ActiveIntronRegion	1	6.51	10.11	25.20	36.84	93.06	5.76	44.88
111	I19_SR1	SilentIntronRegion	0	2.02	1.05	5.31	3.97	41.04	0.75	19.88
112	I19_AR3	ActiveIntronRegion	0	5.77	5.04	8.80	4.74	55.25	0.40	24.23
113	E20_Aa	NovelBoundary	0	5.61	0.00	8.77	4.66	74.05	0.00	31.94
114	ER20a	ExonRegion	1	65.95	9.89	65.38	17.10	236.59	3.26	213.48
115	E20a_E21a	KnownJunction	1	61.22	6.23	58.93	20.89	327.26	0.00	198.17
116	ER21a	ExonRegion	0	42.55	57.61	78.04	117.74	237.41	11.04	370.57