Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ZNF44	Gene	0	26.08	11.98	19.18	8.19	12.42	7.79	11.45
2	354656	Transcript	0	4.68	0.85	1.58	0.49	1.08	0.76	1.56
3	355684	Transcript	0	0	0	0	0	0	0	0
4	356109	Transcript	0	5.25	2.86	5.37	4.19	1.35	1.68	2.08
5	397742	Transcript	0	3.49	3.00	3.97	0.97	1.25	2.60	7.60
6	ER1a	ExonRegion	1	13.50	5.79	3.04	5.91	2.84	3.20	6.26
7	E1a_E2a	KnownJunction	0	4.37	4.31	2.10	4.77	0.00	2.89	1.78
8	E1a_E5a	NovelJunction	0	2.30	8.80	5.68	5.80	1.11	0.00	6.00
9	ER2a	ExonRegion	0	8.57	6.47	2.97	2.90	0.60	2.19	2.84
10	E2a_E3a	KnownJunction	0	2.65	1.39	0.00	0.00	0.00	1.53	0.00
11	E2a_E5a	KnownJunction	0	1.25	1.08	0.50	1.68	0.00	0.00	0.00
12	I2_AR2	ActiveIntronRegion	0	10.40	2.28	7.86	1.55	2.57	1.01	3.98
13	I2_SR3	SilentIntronRegion	0	11.07	1.83	4.82	0.38	1.32	0.37	1.64
14	ER3a	ExonRegion	0	6.72	0.30	3.17	0.99	2.15	0.00	3.12
15	E3_Da	NovelBoundary	0	13.82	3.02	9.86	1.68	2.19	1.66	3.86
16	I3	Intron	0	10.56	2.44	5.52	1.39	2.17	0.90	3.22
17	I3_AR1	ActiveIntronRegion	0	10.85	2.06	5.09	2.35	2.85	1.16	3.29
18	I3_SR2	SilentIntronRegion	0	14.98	1.36	6.01	1.10	2.24	0.62	3.23
19	I3_SR3	SilentIntronRegion	0	13.02	4.12	7.89	2.17	2.60	1.37	4.92
20	ER4a	ExonRegion	0	0.00	0.00	2.94	1.25	0.00	0.00	0.00
21	E5_Aa	NovelBoundary	0	26.92	4.49	17.33	9.86	2.28	6.11	4.39
22	ER5a	ExonRegion	0	32.95	15.40	18.26	12.46	16.47	9.35	12.73
23	E5_Da	NovelBoundary	0	13.64	4.18	5.83	0.00	2.07	2.52	8.14
24	E5a_E6a	KnownJunction	0	32.06	20.68	21.51	15.20	21.39	12.78	17.38
25	ER6a	ExonRegion	0	33.33	23.96	27.76	12.74	16.97	6.77	15.57
26	E6a_E7a	KnownJunction	1	37.54	28.95	28.61	8.48	8.46	3.14	9.96
27	E6a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER7a	ExonRegion	0	52.79	21.84	37.54	12.28	28.02	16.17	22.02
29	E7_Da	NovelBoundary	0	459.27	545.18	447.22	537.03	174.44	575.26	286.63
30	E7_Db	NovelBoundary	0	54.56	33.63	44.85	20.78	23.49	21.47	18.43
31	E7b_E8a	KnownJunction	0	0.00	2.86	0.85	0.00	0.00	5.79	0.60
32	ER7b	ExonRegion	0	3.07	4.86	1.35	0.00	0.81	1.23	3.37
33	I7_AR1	ActiveIntronRegion	0	21.47	9.80	15.37	8.32	14.09	6.90	9.22
34	I7	Intron	0	10.53	4.30	7.06	9.05	0.09	1.12	1.31
35	I7_SR1	SilentIntronRegion	0	10.55	4.31	7.07	9.06	0.09	1.12	1.31
36	E8_Aa	NovelBoundary	1	18.53	6.23	11.86	22.27	0.00	0.00	1.39
37	ER8a	ExonRegion	0	9.94	6.43	7.08	4.45	1.75	3.99	10.46
38	E8_Da	NovelBoundary	1	26.52	8.80	18.72	21.70	0.00	1.05	0.00
39	E8a_E9a	KnownJunction	1	1.72	2.73	5.86	0.00	2.12	1.23	12.41
40	I8	Intron	1	16.21	4.55	12.31	6.07	0.00	1.84	0.00
41	I8_SR1	SilentIntronRegion	1	16.37	4.59	12.41	6.13	0.00	1.85	0.00
42	E9_Aa	NovelBoundary	1	15.04	2.84	10.85	11.08	0.00	1.13	0.00
43	ER9a	ExonRegion	0	3.83	1.97	6.61	0.00	2.03	4.98	13.74
44	E9_Da	NovelBoundary	1	15.61	0.00	9.70	10.05	1.01	1.18	0.57
45	E9a_E10a	KnownJunction	1	4.56	1.58	1.84	0.00	2.12	3.14	13.27
46	E10_Aa	NovelBoundary	1	7.74	4.05	9.00	4.04	0.00	1.50	0.00
47	ER10a	ExonRegion	0	4.80	3.55	5.26	2.06	1.13	0.44	6.99
48	E10_Da	NovelBoundary	0	15.15	4.33	12.13	6.15	1.18	3.00	13.93
49	Ix	Intron	0	20.41	5.43	20.07	8.60	1.85	3.72	10.92
50	Ix_AR2	ActiveIntronRegion	0	21.50	3.91	21.75	7.47	1.48	2.75	9.89
51	Ix_SR1	SilentIntronRegion	0	19.76	6.63	20.17	9.13	2.39	3.79	13.03
52	Ix_AR1	ActiveIntronRegion	0	22.17	5.08	20.42	9.24	1.53	4.80	9.44
53	E11_Aa	NovelBoundary	1	74.95	24.75	67.08	28.61	3.53	9.33	15.92
54	ER11a	ExonRegion	1	18.72	4.00	19.53	12.44	2.66	3.95	5.13
55	E11_Da	NovelBoundary	0	59.68	22.20	46.04	28.58	5.53	10.00	12.28
56	E11a_E12a	KnownJunction	0	1.49	0.00	0.00	1.68	0.00	0.00	0.77
57	Ix	Intron	0	9.99	4.99	18.63	10.28	1.86	7.55	6.46
58	Ix_SR1	SilentIntronRegion	0	9.99	4.99	18.63	10.28	1.86	7.55	6.46
59	E12_Aa	NovelBoundary	1	34.51	24.43	29.40	21.62	1.18	25.35	0.86
60	ER12a	ExonRegion	1	22.16	7.64	12.78	8.62	6.56	2.70	1.36
61	E12_Da	NovelBoundary	1	17.04	7.62	11.48	11.87	0.92	12.19	0.66
62	E12a_E13a	KnownJunction	0	0.00	1.63	0.00	0.00	0.00	0.00	0.00
63	I12	Intron	0	17.29	10.36	15.93	13.60	7.25	3.31	2.34
64	I12_SR2	SilentIntronRegion	0	21.95	13.14	20.44	17.00	8.87	4.53	2.92
65	E13_Aa	NovelBoundary	0	30.74	9.93	20.55	16.47	10.81	7.02	7.41
66	ER13a	ExonRegion	0	11.55	7.40	9.40	10.86	2.01	1.83	2.72
67	E13_Da	NovelBoundary	0	4.51	3.60	10.04	10.27	5.26	2.79	3.11
68	E13a_E14a	KnownJunction	0	0.00	0.00	0.72	1.68	0.00	0.00	2.18
69	I13	Intron	0	7.57	11.02	6.94	15.68	1.67	2.44	0.90
70	I13_AR1	ActiveIntronRegion	0	7.61	11.08	6.98	15.76	1.68	2.46	0.90
71	E14_Aa	NovelBoundary	1	30.93	28.11	25.64	36.38	2.12	5.39	3.80
72	ER14a	ExonRegion	0	4.77	8.31	2.45	11.19	1.18	4.38	2.00
73	E14_Da	NovelBoundary	1	22.18	31.50	14.08	44.97	4.13	0.00	0.80
74	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
75	I14	Intron	1	13.32	6.69	11.92	9.26	1.02	2.68	0.94
76	I14_AR1	ActiveIntronRegion	0	13.30	18.09	13.47	18.27	3.07	4.37	1.27
77	I14_SR1	SilentIntronRegion	0	13.33	3.17	11.45	6.47	0.39	2.15	0.84
78	ER15a	ExonRegion	0	6.82	8.55	9.33	10.52	1.29	3.40	4.89
79	E15_Da	NovelBoundary	0	10.20	2.52	8.72	2.60	0.00	2.49	1.43
80	E15a_E16a	KnownJunction	0	0.58	0.00	0.57	0.00	1.18	1.18	3.94
81	ER16a	ExonRegion	0	2.68	0.98	4.15	1.00	1.19	1.62	2.25
82	E16_Da	NovelBoundary	0	13.15	14.24	8.46	8.67	6.82	6.97	11.67
83	E16a_E17a	KnownJunction	0	2.45	1.58	8.06	2.63	2.14	2.76	1.48
84	E17_Aa	NovelBoundary	0	36.45	15.13	42.49	17.96	3.43	26.50	14.09
85	ER17a	ExonRegion	0	4.04	1.43	8.25	2.47	1.51	1.73	1.41
86	E17_Da	NovelBoundary	0	65.81	25.85	38.71	26.71	1.13	16.67	27.49
87	E17a_E18a	KnownJunction	0	3.19	0.00	4.37	1.52	0.00	1.45	1.58
88	ER18a	ExonRegion	0	5.54	4.34	6.29	2.44	1.89	1.93	3.55
89	IG38_AR6	ActiveIntergenicRegion	0	19.73	3.25	9.85	5.09	1.06	5.18	0.68
90	IG38_AR4	ActiveIntergenicRegion	0	12.36	20.13	11.25	23.60	5.63	6.62	1.18