Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CALR3	Gene	0	0.07	0.32	0.14	0.09	1.54	0.46	0.03
2	409035	Transcript	0	0.11	0.41	0.04	0.15	0.00	0.28	0.03
3	269881	Transcript	0	0.00	0.00	0.60	0.00	4.35	0.68	0.00
4	IG17	Intergenic	0	19.07	5.93	15.84	4.64	24.13	3.74	19.02
5	IG17_AR14	ActiveIntergenicRegion	0	25.98	3.12	22.26	4.50	31.68	0.99	27.05
6	IG17_SR10	SilentIntergenicRegion	0	17.13	2.83	14.68	1.56	38.47	1.94	15.54
7	IG17_AR12	ActiveIntergenicRegion	0	41.27	7.92	31.66	4.89	48.36	3.39	33.50
8	IG17_SR9	SilentIntergenicRegion	0	20.29	3.48	18.09	0.83	33.05	1.35	27.44
9	IG17_AR11	ActiveIntergenicRegion	0	27.26	3.11	28.81	2.09	47.18	2.62	43.36
10	IG17_AR10	ActiveIntergenicRegion	0	24.28	4.45	23.27	1.39	29.99	1.38	28.58
11	IG17_AR8	ActiveIntergenicRegion	0	49.39	4.44	30.02	4.56	47.79	3.04	37.17
12	IG17_SR5	SilentIntergenicRegion	0	19.81	5.12	12.94	2.32	26.56	0.65	17.67
13	IG17_AR7	ActiveIntergenicRegion	0	20.87	3.55	16.93	5.82	36.70	3.34	25.69
14	IG17_AR6	ActiveIntergenicRegion	0	10.34	1.99	7.45	1.53	5.49	0.51	7.36
15	IG17_AR3	ActiveIntergenicRegion	0	31.01	32.49	35.81	26.37	43.12	27.82	35.58
16	ER1a	ExonRegion	0	0.00	0.28	0.00	0.00	0.00	0.27	0.00
17	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER2a	ExonRegion	0	0.06	0.00	0.03	0.05	0.00	0.05	0.00
19	Ix_AR1	ActiveIntronRegion	0	11.80	24.83	8.14	7.19	0.45	14.11	17.92
20	ER3a	ExonRegion	0	1.53	0.26	0.64	1.41	0.00	0.75	0.00
21	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	Ix	Intron	0	12.77	47.06	9.45	10.58	1.58	15.24	5.55
23	Ix_AR1	ActiveIntronRegion	0	12.81	47.20	9.48	10.61	1.58	15.29	5.57
24	ER4a	ExonRegion	0	0.00	0.16	0.00	0.08	0.00	0.31	0.00
25	E4_Da	NovelBoundary	0	63.27	224.07	49.64	139.38	17.59	126.84	37.35
26	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	I4	Intron	0	9.88	9.92	4.55	5.04	1.87	6.28	3.91
28	I4_AR1	ActiveIntronRegion	0	10.38	10.37	4.78	5.21	1.96	6.60	4.10
29	ER5a	ExonRegion	0	0.00	1.88	0.00	0.50	0.00	1.63	0.16
30	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	Ix_AR1	ActiveIntronRegion	0	29.72	64.74	18.06	26.35	13.20	20.12	31.23
32	ER6a	ExonRegion	0	0.00	3.58	0.00	0.22	0.00	1.12	0.22
33	E6_Da	NovelBoundary	0	136.14	440.73	158.22	274.57	93.41	106.61	343.28
34	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	I6	Intron	0	22.85	25.24	24.57	21.70	12.45	16.50	24.85
36	I6_AR1	ActiveIntronRegion	0	67.26	83.19	75.08	66.69	40.66	55.99	97.49
37	I6_SR1	SilentIntronRegion	0	13.62	14.57	20.04	11.74	7.58	2.18	6.12
38	I6_SR2	SilentIntronRegion	0	15.88	8.77	13.15	12.03	4.65	9.20	2.89
39	I6_AR3	ActiveIntronRegion	0	10.55	15.88	15.41	13.72	4.49	9.00	4.63
40	I6_AR5	ActiveIntronRegion	0	8.95	7.74	4.95	8.38	3.73	5.41	2.23
41	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	E7_Da	NovelBoundary	0	69.85	208.86	104.17	280.88	134.84	251.81	122.55
43	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER8a	ExonRegion	0	0.00	0.00	0.04	0.00	1.60	1.21	0.01
45	E8a_E9a	KnownJunction	0	0.00	0.00	0.59	0.00	0.00	0.00	0.00
46	ER9a	ExonRegion	0	0.54	0.00	0.74	0.00	2.49	1.15	0.47
47	E9a_E10a	KnownJunction	0	0.00	0.00	1.52	0.00	2.35	1.37	0.00
48	E9a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	ER10a	ExonRegion	0	0.00	0.00	0.36	0.00	5.56	0.34	0.00
50	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	13.09	0.00	0.00
51	ER11a	ExonRegion	0	0.00	0.00	0.65	0.00	5.79	0.75	0.00
52	E11a_E12a	KnownJunction	0	0.00	0.00	1.45	0.00	5.39	1.31	0.00
53	ER12a	ExonRegion	0	0.00	0.00	0.78	0.00	4.49	1.12	0.00
54	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.88	0.00	0.00
55	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	5.14	0.00	0.00
56	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	5.53	0.00	0.00
57	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	3.93	0.00	0.00
58	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	6.59	0.00	0.00
59	ER15a	ExonRegion	0	0.00	0.00	0.03	0.00	4.51	0.00	0.00
60	E15a_E16a	KnownJunction	0	0.00	0.00	0.50	0.00	5.67	0.00	0.00
61	ER16a	ExonRegion	0	0.29	0.00	0.25	0.00	2.11	0.00	0.00
62	ER16b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00