Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SIN3B	Gene	0	68.84	104.77	75.91	127.62	82.35	108.95	100.53
2	248054	Transcript	1	11.93	25.75	42.23	36.82	57.40	23.53	48.02
3	379803	Transcript	0	26.29	44.43	38.62	56.43	13.34	46.79	39.13
4	ER1a	ExonRegion	0	1.49	16.68	2.30	20.50	1.79	18.05	4.70
5	E1a_E2a	KnownJunction	1	4.37	56.12	11.58	47.57	6.96	38.22	20.85
6	ER2a	ExonRegion	0	27.31	90.90	41.73	113.95	39.34	104.18	71.40
7	E2a_E3a	KnownJunction	0	54.08	123.90	77.24	140.90	93.06	129.50	105.16
8	ER3a	ExonRegion	0	71.11	168.34	111.06	172.25	109.21	182.89	136.40
9	E3a_E4a	KnownJunction	0	67.49	188.97	110.59	176.50	79.44	198.88	132.48
10	ER4a	ExonRegion	0	91.37	160.37	127.91	173.43	136.10	164.88	148.81
11	E4a_E5a	KnownJunction	0	82.21	105.22	86.65	123.24	140.44	109.80	130.46
12	ER5a	ExonRegion	0	91.59	122.57	88.28	136.59	110.45	113.56	116.03
13	E5a_E6a	KnownJunction	0	101.84	110.45	90.29	121.21	77.07	99.03	98.59
14	ER6a	ExonRegion	0	82.13	119.85	76.88	130.31	88.80	100.03	111.32
15	E6a_E7a	KnownJunction	0	80.41	83.83	74.65	107.71	89.68	70.64	76.77
16	E6a_E9a	NovelJunction	0	0.00	1.29	1.95	3.01	1.18	9.41	1.48
17	ER7a	ExonRegion	0	107.05	97.90	111.32	109.23	122.66	72.59	105.10
18	E7a_E8a	KnownJunction	0	123.32	95.94	118.41	116.71	88.85	50.28	102.48
19	ER8a	ExonRegion	0	98.73	112.54	124.74	110.37	125.00	76.28	113.00
20	E8_Da	NovelBoundary	0	24.47	23.41	22.73	13.74	41.43	10.72	34.45
21	E8a_E9a	KnownJunction	0	118.72	129.18	138.43	117.39	83.54	88.31	104.98
22	I8_AR1	ActiveIntronRegion	0	15.57	9.37	9.40	5.20	46.70	2.93	12.41
23	ER9a	ExonRegion	0	100.06	107.29	134.16	128.69	99.29	93.44	116.74
24	E9a_E10a	KnownJunction	0	38.54	60.14	56.16	79.43	14.02	71.58	43.17
25	E9a_E11a	KnownJunction	1	11.93	25.75	42.23	36.82	57.40	23.53	48.02
26	ER10a	ExonRegion	0	37.04	56.30	50.69	68.39	20.56	53.61	46.08
27	E10_Da	NovelBoundary	0	76.51	61.34	43.64	67.62	23.97	47.81	43.77
28	E10a_E11a	KnownJunction	1	3.29	16.87	9.01	21.46	5.44	15.17	28.15
29	I10	Intron	0	45.91	27.65	30.98	22.39	28.20	15.20	31.45
30	I10_AR1	ActiveIntronRegion	0	46.13	27.79	31.13	22.49	28.34	15.28	31.60
31	E11_Aa	NovelBoundary	0	45.11	35.23	28.02	33.76	30.55	22.38	39.15
32	ER11a	ExonRegion	0	71.05	104.44	88.45	142.05	94.34	94.19	132.21
33	E11a_E12a	KnownJunction	0	90.46	123.37	96.12	155.15	68.19	100.15	138.54
34	ER12a	ExonRegion	0	69.58	104.06	88.17	125.26	97.98	104.10	127.46
35	E12a_E13a	KnownJunction	0	56.81	109.34	76.94	112.37	74.25	103.96	123.55
36	ER13a	ExonRegion	0	62.62	109.87	76.35	126.59	80.83	111.00	110.90
37	E13a_E14a	KnownJunction	0	49.62	102.30	76.92	146.21	86.54	122.82	113.86
38	ER14a	ExonRegion	0	38.65	67.89	46.43	95.06	43.32	71.53	69.52
39	E14a_E15a	KnownJunction	0	43.46	73.27	61.09	89.48	56.89	72.73	72.67
40	ER15a	ExonRegion	0	55.26	109.57	71.34	125.72	76.71	84.80	120.42
41	E15a_E16a	KnownJunction	0	56.23	79.63	48.90	78.97	66.58	72.41	111.86
42	I15	Intron	0	15.89	12.56	14.67	11.23	20.34	9.16	21.89
43	I15_SR1	SilentIntronRegion	1	18.54	10.64	20.02	7.86	20.05	6.80	23.64
44	I15_SR2	SilentIntronRegion	1	19.74	34.11	11.04	25.14	23.85	17.28	20.29
45	I15_AR3	ActiveIntronRegion	1	16.71	12.82	16.57	15.70	24.50	14.12	28.92
46	I15_AR4	ActiveIntronRegion	0	16.46	7.32	13.08	4.76	17.18	4.07	17.54
47	I15_AR5	ActiveIntronRegion	0	7.12	7.83	4.94	8.11	20.04	3.68	15.45
48	ER16a	ExonRegion	0	62.09	113.02	52.69	137.88	97.12	82.39	117.85
49	E16_Da	NovelBoundary	1	23.37	4.41	22.02	0.00	1.18	0.00	2.22
50	E16a_E17a	KnownJunction	0	76.42	132.88	66.19	135.02	100.33	103.90	133.30
51	ER17a	ExonRegion	0	67.32	116.95	59.72	140.58	100.68	95.65	103.69
52	E17a_E18a	KnownJunction	0	52.92	110.89	48.82	127.76	119.44	89.67	95.28
53	E17a_E19a	NovelJunction	0	0.80	1.60	0.66	3.28	0.00	8.01	0.54
54	ER18a	ExonRegion	0	67.36	104.96	65.78	127.40	101.41	80.06	101.04
55	E18a_E19a	KnownJunction	0	75.34	114.49	68.14	122.40	76.86	78.36	99.00
56	ER19a	ExonRegion	0	60.84	107.24	54.10	124.97	80.40	90.97	101.71
57	E19a_E20a	KnownJunction	0	82.65	118.75	68.12	159.27	90.37	102.48	147.86
58	ER20a	ExonRegion	0	78.53	110.06	77.30	140.71	84.40	134.91	99.02