Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AKAP8	Gene	0	170.97	166.20	153.93	211.30	98.04	156.79	96.26
2	269701	Transcript	0	96.02	153.69	117.86	188.41	90.69	134.67	97.73
3	ER1a	ExonRegion	0	26.57	52.13	37.49	61.76	55.20	49.71	54.23
4	E1a_E2a	KnownJunction	0	41.99	74.19	62.80	95.20	59.41	76.11	112.85
5	E1a_E3a	NovelJunction	0	4.74	8.12	7.27	16.85	3.41	12.92	2.16
6	E1a_E4a	NovelJunction	0	0.00	4.49	0.00	1.46	0.00	7.99	0.00
7	E1a_E5a	NovelJunction	0	2.57	6.78	1.60	12.76	0.00	11.90	0.00
8	I1_AR2	ActiveIntronRegion	0	53.37	16.38	23.43	30.29	5.62	14.93	11.14
9	ER2a	ExonRegion	1	29.48	77.00	46.98	77.82	29.55	60.64	83.87
10	E2a_E3a	KnownJunction	0	14.52	41.17	22.72	28.34	17.43	23.32	32.76
11	ER3a	ExonRegion	1	14.41	109.45	26.05	77.39	13.96	58.40	45.99
12	E3a_E4a	KnownJunction	1	11.55	125.55	18.16	96.80	13.00	62.31	35.03
13	ER4a	ExonRegion	0	29.33	108.30	39.19	119.47	35.75	96.73	43.97
14	E4a_E5a	KnownJunction	0	20.93	79.52	19.20	93.06	32.02	65.55	21.48
15	ER5a	ExonRegion	0	53.26	111.57	49.43	149.37	37.16	111.11	46.89
16	E5_Da	NovelBoundary	1	52.24	30.92	20.92	34.22	12.13	14.23	6.91
17	E5a_E6a	KnownJunction	0	86.22	167.24	77.86	145.59	89.15	151.31	76.29
18	E6_Aa	NovelBoundary	0	84.94	71.56	53.17	129.03	4.33	50.73	22.56
19	ER6a	ExonRegion	0	111.85	237.83	143.75	267.19	103.58	214.00	118.29
20	E6_Da	NovelBoundary	1	52.94	74.93	33.21	98.37	1.89	34.87	10.76
21	E6a_E7a	KnownJunction	0	101.27	215.85	138.14	255.12	112.18	204.35	107.47
22	I6	Intron	0	48.16	45.28	28.32	71.53	0.19	31.80	7.65
23	I6_SR1	SilentIntronRegion	0	48.54	45.64	28.57	72.10	0.19	32.08	7.71
24	E7_Aa	NovelBoundary	1	80.71	68.67	54.41	96.58	0.95	42.50	6.46
25	ER7a	ExonRegion	0	125.47	244.68	158.54	286.35	115.67	218.54	134.37
26	E7_Da	NovelBoundary	1	94.68	83.78	60.44	141.09	1.08	73.73	10.09
27	E7a_E8a	KnownJunction	0	81.93	169.03	125.70	213.99	113.79	152.22	111.34
28	I7	Intron	0	60.14	64.58	46.34	106.79	1.47	55.73	9.10
29	I7_SR1	SilentIntronRegion	0	51.78	54.59	30.78	66.36	1.98	37.29	6.47
30	I7_AR1	ActiveIntronRegion	0	66.14	59.85	44.36	99.41	1.90	53.34	7.94
31	I7_SR2	SilentIntronRegion	0	58.60	75.56	57.38	137.86	0.74	68.85	11.86
32	E8_Aa	NovelBoundary	0	40.57	70.80	36.87	101.81	0.00	56.98	8.57
33	ER8a	ExonRegion	0	104.94	211.99	168.13	304.88	119.14	204.89	139.98
34	E8_Da	NovelBoundary	0	32.76	68.88	45.15	124.86	4.45	58.58	14.52
35	E8a_E9a	KnownJunction	0	74.19	141.73	123.71	247.83	111.88	156.56	108.03
36	I8	Intron	0	46.08	80.22	38.23	103.28	1.96	48.90	13.15
37	I8_SR1	SilentIntronRegion	0	46.28	82.42	35.09	110.39	1.69	51.83	14.22
38	I8_AR1	ActiveIntronRegion	0	45.80	92.15	48.56	105.00	6.83	44.85	20.58
39	I8_SR2	SilentIntronRegion	0	46.02	75.17	40.03	94.38	1.25	46.25	10.29
40	E9_Aa	NovelBoundary	0	36.25	87.80	35.29	109.58	4.50	44.22	15.71
41	ER9a	ExonRegion	0	116.45	200.27	161.35	292.84	99.26	195.31	135.52
42	E9_Da	NovelBoundary	1	38.65	79.05	32.22	100.10	0.00	24.82	8.11
43	E9a_E10a	KnownJunction	0	131.85	149.64	153.58	251.08	114.11	144.75	135.50
44	I9	Intron	0	52.49	61.05	51.04	84.01	0.86	42.42	8.88
45	I9_SR1	SilentIntronRegion	0	54.18	63.02	52.69	86.72	0.89	43.78	9.17
46	E10_Aa	NovelBoundary	1	105.16	149.90	132.67	171.68	1.06	107.87	20.04
47	ER10a	ExonRegion	0	148.33	218.30	210.84	261.64	117.05	189.98	148.37
48	E10_Da	NovelBoundary	0	47.97	79.55	51.17	66.92	0.00	45.37	17.18
49	E10a_E11a	KnownJunction	0	109.84	150.27	158.25	188.69	117.92	135.82	113.00
50	I10	Intron	1	43.40	55.48	30.85	39.14	0.72	21.72	10.34
51	I10_SR1	SilentIntronRegion	1	43.69	55.84	31.05	39.38	0.72	21.86	10.41
52	E11_Aa	NovelBoundary	0	48.27	56.90	47.84	51.77	0.92	30.55	17.56
53	ER11a	ExonRegion	0	154.68	149.14	195.61	183.79	126.72	139.15	130.25
54	E11_Da	NovelBoundary	1	113.81	64.37	54.66	68.08	1.75	25.33	14.76
55	E11a_E12a	KnownJunction	0	140.61	133.56	184.54	164.42	154.22	111.62	115.45
56	I11	Intron	0	75.98	27.49	49.39	31.73	0.37	17.59	11.03
57	I11_SR1	SilentIntronRegion	0	86.51	31.78	56.63	36.57	0.45	19.28	12.92
58	E12_Aa	NovelBoundary	1	97.37	45.08	52.19	43.43	0.92	29.08	9.87
59	ER12a	ExonRegion	0	148.07	178.68	159.57	215.86	127.44	139.57	111.03
60	E12_Da	NovelBoundary	1	98.04	51.41	59.00	40.01	1.04	21.57	13.06
61	E12a_E13a	KnownJunction	0	145.14	191.52	171.18	213.94	113.90	146.38	120.05
62	I12	Intron	1	106.59	33.35	61.96	39.07	2.45	18.87	12.00
63	I12_SR1	SilentIntronRegion	0	107.14	33.53	62.29	39.28	2.47	18.96	12.07
64	E13_Aa	NovelBoundary	1	155.53	64.47	114.70	58.35	0.99	41.30	23.69
65	ER13a	ExonRegion	0	212.19	230.29	205.47	292.48	149.97	191.46	130.35
66	E13_Da	NovelBoundary	1	198.16	84.31	143.93	86.45	8.44	34.89	27.89
67	E13a_E14a	KnownJunction	0	110.32	200.24	124.84	267.12	149.66	160.26	119.65
68	I13	Intron	0	96.77	49.80	69.11	53.10	3.48	29.12	14.29
69	I13_SR1	SilentIntronRegion	0	101.85	50.28	71.72	55.90	3.49	30.18	14.28
70	I13_AR1	ActiveIntronRegion	0	66.62	47.43	53.85	36.45	3.45	22.89	14.52
71	E14_Aa	NovelBoundary	0	92.56	68.94	73.75	73.71	1.80	45.77	20.85
72	ER14a	ExonRegion	0	247.13	180.50	199.19	234.96	119.52	175.95	106.54
73	IG41	Intergenic	0	45.18	17.81	41.77	21.43	7.57	12.73	8.42
74	IG41_AR29	ActiveIntergenicRegion	0	151.63	85.42	107.31	107.94	4.04	94.38	13.77
75	IG41_SR15	SilentIntergenicRegion	0	125.47	74.71	110.80	76.22	5.35	45.11	13.99
76	IG41_SR14	SilentIntergenicRegion	0	62.37	21.09	59.54	35.24	3.28	20.19	5.79
77	IG41_AR27	ActiveIntergenicRegion	0	95.66	49.60	115.57	76.59	3.05	36.22	9.93
78	IG41_SR13	SilentIntergenicRegion	0	45.64	25.93	51.11	33.73	1.89	20.14	5.16
79	IG41_AR26	ActiveIntergenicRegion	0	3.20	3.02	4.35	9.01	0.16	8.78	2.13
80	IG41_SR11	SilentIntergenicRegion	0	0.17	2.86	0.00	8.22	0.00	2.15	0.00
81	IG41_AR24	ActiveIntergenicRegion	0	25.65	32.59	15.07	41.97	2.75	22.49	1.95
82	IG41_SR10	SilentIntergenicRegion	0	25.17	9.13	40.10	9.52	5.41	9.48	5.25
83	IG41_AR23	ActiveIntergenicRegion	0	59.64	11.46	47.95	14.50	5.05	2.45	11.41
84	IG41_AR22	ActiveIntergenicRegion	0	41.89	10.57	44.02	16.17	8.24	1.01	8.57
85	IG41_AR21	ActiveIntergenicRegion	0	37.56	13.79	45.23	9.54	5.84	5.08	11.34
86	IG41_AR20	ActiveIntergenicRegion	0	53.33	10.29	45.97	17.54	9.64	8.01	11.24
87	IG41_AR19	ActiveIntergenicRegion	0	53.42	12.18	45.97	15.49	8.74	9.44	9.29
88	IG41_AR18	ActiveIntergenicRegion	0	65.93	6.05	50.63	11.89	6.69	11.92	11.52
89	IG41_AR17	ActiveIntergenicRegion	0	69.20	3.36	44.11	10.20	6.86	8.29	7.54
90	IG41_AR16	ActiveIntergenicRegion	0	54.56	5.98	36.94	6.57	10.73	3.83	5.55
91	IG41_AR15	ActiveIntergenicRegion	0	76.76	8.79	58.41	8.05	12.49	4.58	8.07
92	IG41_SR9	SilentIntergenicRegion	0	66.63	9.72	67.25	8.73	5.90	3.68	6.36
93	IG41_AR14	ActiveIntergenicRegion	0	59.63	10.02	62.05	7.76	10.91	3.06	6.29
94	IG41_AR13	ActiveIntergenicRegion	0	51.74	7.29	50.69	5.61	14.98	3.68	4.72
95	IG41_AR12	ActiveIntergenicRegion	0	54.90	6.76	44.62	3.04	12.76	3.68	3.84
96	IG41_AR11	ActiveIntergenicRegion	0	44.62	5.66	42.27	2.96	5.59	3.10	3.27
97	IG41_AR10	ActiveIntergenicRegion	0	27.89	2.55	29.74	2.49	3.40	0.86	2.29
98	IG41_SR8	SilentIntergenicRegion	0	16.20	1.37	16.65	2.03	2.33	0.00	1.81
99	IG41_AR9	ActiveIntergenicRegion	0	24.43	2.78	29.67	4.91	4.50	4.59	3.65
100	IG41_SR7	SilentIntergenicRegion	0	48.00	12.27	51.76	14.25	9.59	11.73	8.67
101	IG41_AR8	ActiveIntergenicRegion	0	48.81	16.98	51.07	19.53	14.01	10.15	10.27
102	IG41_SR6	SilentIntergenicRegion	0	34.03	8.42	36.60	10.76	8.35	6.51	5.62
103	IG41_AR7	ActiveIntergenicRegion	0	53.12	11.63	37.36	10.89	8.42	11.20	9.24
104	IG41_AR6	ActiveIntergenicRegion	0	38.61	13.97	27.35	15.43	12.86	11.19	10.62
105	IG41_AR5	ActiveIntergenicRegion	0	35.62	12.76	24.10	15.59	13.19	10.33	9.16
106	IG41_SR5	SilentIntergenicRegion	0	34.79	9.00	29.49	11.32	10.20	7.00	7.97
107	IG41_AR4	ActiveIntergenicRegion	0	43.82	10.84	45.49	11.51	11.45	7.98	8.68
108	IG41_SR4	SilentIntergenicRegion	0	25.00	14.24	35.73	11.93	9.52	3.03	6.38
109	IG41_AR2	ActiveIntergenicRegion	0	48.09	17.85	49.45	19.52	11.95	8.66	17.07
110	IG41_SR2	SilentIntergenicRegion	0	29.66	9.60	24.47	11.40	7.50	4.57	8.50
111	IG41_AR1	ActiveIntergenicRegion	0	30.92	9.48	28.04	13.93	11.25	6.69	8.91
112	IG41_SR1	SilentIntergenicRegion	0	30.69	8.91	20.53	8.44	7.31	8.10	8.13