Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MYO9B	Gene	0	105.27	233.25	100.11	242.77	94.60	247.13	130.94
2	319396	Transcript	0	1.70	8.23	1.11	9.05	0.49	10.74	1.79
3	397274	Transcript	0	64.66	166.80	66.73	164.14	84.00	173.61	92.20
4	IG24_AR3	ActiveIntergenicRegion	0	12.83	11.03	11.42	6.23	1.76	4.05	4.98
5	IG24_SR3	SilentIntergenicRegion	0	10.45	8.20	7.19	4.03	2.65	4.89	4.70
6	IG24_AR4	ActiveIntergenicRegion	0	11.96	7.78	5.55	2.52	2.76	2.83	4.94
7	ER1a	ExonRegion	0	67.36	294.68	76.24	238.72	55.19	227.15	109.57
8	E1a_E2a	KnownJunction	0	122.84	234.13	143.04	237.75	102.10	213.62	158.52
9	E1a_E3a	NovelJunction	1	1.87	41.04	3.92	22.76	1.18	10.18	1.65
10	ER2a	ExonRegion	0	114.22	227.46	132.80	226.55	84.55	201.93	144.77
11	E2a_E3a	KnownJunction	0	100.39	222.26	115.48	239.16	76.10	211.85	122.99
12	ER3a	ExonRegion	0	119.46	259.54	154.84	239.24	88.80	226.83	128.03
13	E3a_E4a	KnownJunction	0	129.51	262.79	166.35	233.88	83.34	226.46	140.32
14	ER4a	ExonRegion	0	150.88	291.29	174.32	283.60	106.28	236.67	161.54
15	E4a_E5a	KnownJunction	0	129.10	274.59	154.55	260.89	79.51	216.92	137.98
16	E5_Aa	NovelBoundary	1	45.26	2.05	52.81	5.55	2.10	0.00	0.00
17	ER5a	ExonRegion	0	128.10	300.76	141.79	267.29	89.96	212.61	148.87
18	E5a_E6a	KnownJunction	0	128.08	289.17	153.43	267.28	112.47	185.48	154.72
19	E5a_E7a	NovelJunction	0	0.00	1.29	0.70	10.00	0.00	1.05	1.58
20	ER6a	ExonRegion	0	117.04	266.65	129.09	242.95	82.37	180.02	123.28
21	E6a_E7a	KnownJunction	0	95.50	213.22	105.13	225.40	83.34	144.67	136.61
22	E6a_E8a	NovelJunction	1	0.62	1.50	4.38	14.33	1.08	6.57	0.60
23	ER7a	ExonRegion	0	133.98	269.83	139.44	279.29	120.29	215.29	178.14
24	E7a_E8a	KnownJunction	0	172.86	311.66	168.46	313.61	98.80	239.88	170.21
25	ER8a	ExonRegion	0	118.10	314.72	136.26	325.41	116.96	244.65	175.25
26	E8a_E9a	KnownJunction	0	98.75	324.11	138.96	342.92	143.76	342.29	192.89
27	ER9a	ExonRegion	0	173.40	344.59	192.88	389.90	155.97	331.40	260.74
28	E9a_E10a	KnownJunction	0	135.79	382.88	139.49	369.01	111.05	355.39	180.23
29	E10_Aa	NovelBoundary	1	45.33	2.89	48.41	7.18	0.00	7.40	0.00
30	ER10a	ExonRegion	0	111.92	344.78	128.27	330.43	108.83	304.20	199.25
31	E10a_E11a	KnownJunction	0	138.01	318.78	159.28	316.59	181.40	245.70	204.84
32	ER11a	ExonRegion	0	104.05	303.12	116.18	277.96	101.68	269.51	155.32
33	E11a_E12a	KnownJunction	0	82.50	245.45	84.93	241.52	89.24	219.65	124.28
34	ER12a	ExonRegion	0	84.49	191.73	91.38	173.70	71.12	173.72	114.82
35	E12a_E13a	KnownJunction	0	95.08	195.28	96.38	174.36	66.28	179.02	116.47
36	E13_Aa	NovelBoundary	1	31.24	1.29	33.02	4.17	0.00	5.87	2.67
37	ER13a	ExonRegion	0	102.14	164.44	98.02	172.90	92.46	181.48	112.35
38	E13a_E14a	KnownJunction	0	158.05	138.50	118.08	154.18	103.25	173.53	103.96
39	E13a_E15a	NovelJunction	0	2.72	3.26	6.47	12.57	4.15	4.77	13.86
40	ER14a	ExonRegion	0	168.53	197.73	143.50	233.18	74.83	234.64	132.10
41	E14a_E15a	KnownJunction	0	88.26	162.41	61.91	179.21	41.38	176.61	59.58
42	ER15a	ExonRegion	0	129.64	192.77	110.13	205.72	69.34	180.28	113.33
43	E15a_E16a	KnownJunction	0	157.69	182.90	152.38	202.59	86.96	170.31	158.66
44	ER16a	ExonRegion	0	170.44	254.86	178.93	273.63	136.02	270.37	189.13
45	E16a_E17a	KnownJunction	0	108.58	213.43	101.10	210.17	95.02	221.50	128.98
46	ER17a	ExonRegion	0	111.94	212.53	111.20	221.33	81.18	222.34	132.36
47	E17a_E18a	KnownJunction	0	92.51	237.99	100.20	235.02	81.51	233.83	121.52
48	ER18a	ExonRegion	0	82.47	218.72	97.48	232.68	82.93	213.35	119.24
49	E18a_E19a	KnownJunction	0	97.30	206.68	111.30	222.96	88.85	198.64	116.96
50	ER19a	ExonRegion	0	88.20	212.34	96.28	231.23	85.39	212.74	124.75
51	E19a_E20a	KnownJunction	0	59.88	198.72	71.43	227.32	60.31	197.76	111.10
52	ER20a	ExonRegion	0	45.35	160.54	50.85	178.72	52.00	151.92	80.03
53	E20a_E21a	KnownJunction	0	62.07	184.45	50.99	175.31	48.76	188.54	91.23
54	ER21a	ExonRegion	0	72.30	160.21	61.59	178.70	50.94	190.78	92.30
55	E21a_E22a	KnownJunction	0	110.70	150.33	67.07	150.60	71.28	193.15	104.02
56	ER22a	ExonRegion	1	139.40	163.73	88.58	143.18	69.36	172.55	83.01
57	E22a_E23a	KnownJunction	1	145.90	165.62	94.83	136.08	79.88	164.76	71.77
58	ER23a	ExonRegion	1	219.49	238.17	156.96	252.42	128.75	299.05	129.25
59	E23a_E24a	KnownJunction	1	338.62	292.03	236.10	343.49	140.23	363.51	194.49
60	E24_Aa	NovelBoundary	0	19.03	43.03	7.57	75.99	5.28	73.11	17.56
61	ER24a	ExonRegion	0	308.59	283.04	249.22	350.61	201.04	362.31	201.13
62	E24a_E25a	KnownJunction	0	237.43	248.92	226.42	333.49	206.18	304.26	208.91
63	ER25a	ExonRegion	0	206.95	349.69	192.91	368.04	190.30	362.51	219.92
64	E25a_E26a	KnownJunction	0	223.55	394.91	258.22	437.41	345.19	398.86	295.69
65	ER26a	ExonRegion	0	190.84	367.26	224.61	405.85	236.44	413.98	283.69
66	E26a_E27a	KnownJunction	0	172.24	369.51	193.41	383.20	273.43	345.18	281.00
67	ER27a	ExonRegion	0	155.07	340.49	168.61	387.31	193.64	367.67	265.47
68	E27a_E28a	KnownJunction	0	86.39	286.60	125.45	322.09	107.31	279.79	219.14
69	ER28a	ExonRegion	1	99.06	297.44	130.09	329.47	154.76	285.86	276.37
70	E28_Da	NovelBoundary	0	40.69	80.99	26.07	120.96	7.12	94.90	22.82
71	E28a_E29a	KnownJunction	0	116.46	262.82	128.40	301.31	206.44	245.81	304.30
72	I28	Intron	0	27.30	58.44	25.75	63.64	5.63	76.93	23.28
73	I28_AR1	ActiveIntronRegion	0	27.49	58.87	25.94	64.10	5.67	77.46	23.45
74	E29_Aa	NovelBoundary	1	23.50	45.19	23.78	96.74	11.23	67.54	22.51
75	ER29a	ExonRegion	0	149.81	313.91	119.34	356.26	196.35	316.87	279.86
76	E29a_E30a	KnownJunction	0	105.35	326.87	92.62	375.48	158.76	359.52	249.55
77	E29a_E36a	NovelJunction	1	0.58	14.16	0.00	2.95	0.99	7.08	0.00
78	ER30a	ExonRegion	0	101.66	297.48	82.72	320.74	160.56	336.22	201.73
79	E30a_E31a	KnownJunction	0	140.48	254.57	88.94	259.59	73.91	245.67	147.56
80	ER31a	ExonRegion	0	144.51	262.64	100.38	296.23	145.16	298.34	164.22
81	E31a_E32a	KnownJunction	0	213.85	257.83	145.46	295.40	184.95	332.45	187.91
82	E32_Aa	NovelBoundary	1	60.75	1.13	43.92	0.00	0.00	1.66	3.38
83	ER32a	ExonRegion	0	90.60	228.04	62.78	277.65	109.00	267.82	108.27
84	E32a_E33a	KnownJunction	0	96.48	244.67	64.29	280.96	72.22	308.38	132.55
85	ER33a	ExonRegion	0	107.03	266.61	90.74	297.86	159.50	287.98	159.56
86	E33_Da	NovelBoundary	0	42.56	122.03	41.86	121.37	50.19	130.11	61.88
87	E33a_E34a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
88	E33b_E35a	KnownJunction	0	94.97	269.78	96.47	261.92	135.18	267.78	164.47
89	ER33b	ExonRegion	0	92.37	253.18	94.70	272.34	135.89	257.46	165.01
90	E34a_E35a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
91	ER34a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
92	ER35a	ExonRegion	0	104.48	269.06	108.72	311.08	140.42	289.99	186.57
93	E35a_E36a	KnownJunction	0	117.15	275.98	126.26	356.84	143.23	362.36	179.07
94	ER36a	ExonRegion	0	131.19	341.56	152.30	401.72	160.18	403.86	211.94
95	E36a_E37a	KnownJunction	0	157.04	345.92	147.93	341.48	155.01	387.18	161.01
96	ER37a	ExonRegion	0	157.67	343.25	159.16	379.60	140.44	446.01	170.50
97	E37a_E38a	KnownJunction	0	105.85	265.24	115.31	323.03	107.75	375.04	133.84
98	ER38a	ExonRegion	0	105.78	259.39	112.79	273.06	101.20	321.82	132.82
99	E38a_E39a	KnownJunction	0	99.97	237.70	104.87	215.65	113.12	239.16	108.93
100	E38b_E39b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
101	ER38b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
102	ER39a	ExonRegion	0	86.22	217.95	94.56	203.01	102.53	233.43	95.93
103	ER39b	ExonRegion	0	45.90	126.07	43.27	118.08	43.32	164.03	48.36
104	E39a_E40a	KnownJunction	0	10.18	49.39	6.64	54.32	2.95	64.43	10.76
105	E39b_E40a	KnownJunction	0	4.92	8.09	5.42	17.47	8.60	19.51	8.27
106	ER39c	ExonRegion	0	9.54	14.07	4.35	14.44	8.71	24.32	10.62
107	E40_Aa	NovelBoundary	0	21.31	37.44	21.14	23.84	34.28	28.49	30.47
108	ER40a	ExonRegion	0	80.07	159.42	59.49	182.65	72.55	242.22	76.69
109	IG25	Intergenic	0	4.03	4.03	3.21	7.04	0.58	14.63	2.37
110	IG25_SR1	SilentIntergenicRegion	0	0.81	1.91	0.92	3.33	0.09	9.23	1.06
111	IG25_AR2	ActiveIntergenicRegion	0	4.41	5.42	2.51	16.05	0.60	27.13	5.72
112	IG25_SR2	SilentIntergenicRegion	0	6.80	5.73	5.33	9.12	1.01	17.74	3.09