Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	APC2	Gene	0	0.46	1.20	0.73	2.16	2.50	3.32	1.81
2	238483	Transcript	0	1.44	0.00	1.85	0.00	2.97	0.00	0.00
3	233607	Transcript	0	0.47	2.17	0.59	2.28	4.20	3.82	2.71
4	IG11_AR1	ActiveIntergenicRegion	0	3.61	5.74	4.54	10.96	5.93	3.29	4.86
5	IG11_AR2	ActiveIntergenicRegion	0	5.07	6.40	3.33	19.01	5.20	5.69	5.20
6	IG11_AR3	ActiveIntergenicRegion	0	2.86	6.99	6.26	11.19	4.76	8.32	4.14
7	IG11_AR4	ActiveIntergenicRegion	0	3.07	6.88	11.18	12.68	9.72	7.36	4.95
8	IG11_SR1	SilentIntergenicRegion	0	3.51	5.03	12.58	14.61	7.64	7.71	5.30
9	IG11_AR5	ActiveIntergenicRegion	0	2.65	6.52	12.41	14.51	6.88	9.98	5.49
10	IG11_AR6	ActiveIntergenicRegion	0	1.98	6.07	12.68	13.00	5.21	8.76	7.42
11	IG11_AR7	ActiveIntergenicRegion	0	3.07	4.86	10.99	12.75	3.87	10.08	7.65
12	IG11_AR8	ActiveIntergenicRegion	0	3.66	3.37	7.69	16.08	6.14	10.46	4.99
13	IG11_SR2	SilentIntergenicRegion	0	2.65	4.35	6.39	5.79	8.04	3.65	4.89
14	IG11_AR9	ActiveIntergenicRegion	0	4.86	6.93	6.57	13.70	10.22	5.72	5.03
15	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.43	0.00	0.00
16	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER2a	ExonRegion	0	0.37	0.00	0.72	0.94	3.08	1.30	0.00
18	E2a_E3a	KnownJunction	0	0.00	0.00	0.62	3.90	3.53	1.29	0.00
19	ER3a	ExonRegion	0	0.30	0.00	0.44	1.48	4.73	0.79	0.00
20	E3a_E4a	KnownJunction	0	0.97	0.00	0.00	0.00	5.46	0.00	0.00
21	ER4a	ExonRegion	0	0.17	0.00	0.29	1.82	3.79	4.21	0.28
22	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	4.01	4.40	7.10	0.00
23	ER5a	ExonRegion	0	0.00	0.32	0.78	2.18	4.87	8.17	1.00
24	E5a_E11b	KnownJunction	0	1.44	0.00	1.85	0.00	2.97	0.00	0.00
25	E5b_E6a	KnownJunction	0	0.00	1.63	0.83	3.36	1.22	1.10	0.00
26	ER5b	ExonRegion	0	0.00	1.21	0.68	2.49	1.62	2.04	0.30
27	ER6a	ExonRegion	0	0.02	1.52	0.16	0.82	3.52	4.69	0.00
28	E6a_E7a	KnownJunction	0	0.00	4.89	0.00	0.00	1.84	0.00	0.00
29	ER7a	ExonRegion	0	1.21	2.16	0.43	0.00	2.62	2.17	0.00
30	E7a_E8a	KnownJunction	0	0.00	1.23	0.00	0.00	1.13	1.15	0.00
31	ER8a	ExonRegion	0	0.00	1.67	0.00	0.54	3.50	1.60	0.00
32	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	1.68	5.23	2.95	0.00
33	ER9a	ExonRegion	0	0.00	0.53	0.13	2.38	3.50	4.01	1.04
34	E9a_E10a	KnownJunction	0	0.00	1.34	0.00	3.96	6.85	3.83	0.00
35	I9_AR1	ActiveIntronRegion	0	2.17	3.10	2.03	0.71	3.35	2.44	8.58
36	E10_Aa	NovelBoundary	0	4.52	2.63	4.61	8.05	7.79	4.13	46.56
37	ER10a	ExonRegion	0	0.49	3.94	1.62	3.65	9.85	6.37	10.62
38	E10_Da	NovelBoundary	0	1.03	12.79	5.79	7.91	2.88	16.11	45.42
39	E10a_E11a	KnownJunction	0	0.80	1.63	0.00	2.52	2.93	7.29	0.00
40	I10	Intron	0	8.35	8.27	8.01	11.10	16.55	9.30	48.10
41	I10_AR1	ActiveIntronRegion	0	9.49	9.22	10.19	11.06	17.11	11.53	45.23
42	I10_SR1	SilentIntronRegion	0	7.11	5.92	4.18	5.24	17.39	5.81	41.73
43	I10_AR2	ActiveIntronRegion	0	7.60	7.90	6.83	12.29	15.96	8.00	52.07
44	E11_Aa	NovelBoundary	0	3.61	4.73	5.52	11.95	10.95	12.11	46.51
45	ER11a	ExonRegion	0	3.61	6.44	3.82	8.24	10.75	12.45	23.32
46	E11_Ab	KnownBoundary	0	6.21	18.44	6.91	17.74	16.28	21.31	59.05
47	ER11b	ExonRegion	0	4.47	7.80	6.99	12.02	17.55	10.93	43.68
48	E11_Da	NovelBoundary	0	7.03	10.04	6.65	22.21	10.44	15.12	53.59
49	E11a_E12a	KnownJunction	0	1.03	1.29	0.62	1.68	4.29	1.02	0.00
50	I11	Intron	0	3.99	7.77	5.80	9.58	8.92	4.97	35.46
51	I11_AR1	ActiveIntronRegion	0	4.09	8.49	6.22	10.69	8.16	5.92	37.72
52	I11_SR1	SilentIntronRegion	0	3.77	5.57	4.59	6.16	11.86	1.93	29.01
53	E12_Aa	NovelBoundary	0	6.38	12.61	3.65	14.11	9.01	6.49	35.08
54	ER12a	ExonRegion	0	0.48	0.50	1.25	4.78	8.71	3.14	10.35
55	E12_Da	NovelBoundary	0	4.26	14.11	6.31	7.42	12.15	2.71	37.99
56	E12a_E13a	KnownJunction	0	0.00	1.18	0.00	1.57	7.22	1.39	0.00
57	I12	Intron	0	2.82	6.18	2.85	5.76	7.35	3.12	27.92
58	I12_SR1	SilentIntronRegion	0	2.85	6.25	2.88	5.81	7.43	3.15	28.21
59	E13_Aa	NovelBoundary	0	7.51	6.65	8.13	8.78	8.55	10.08	63.92
60	ER13a	ExonRegion	0	2.94	4.59	5.82	7.49	15.64	4.23	25.03
61	E13_Da	NovelBoundary	0	2.25	7.93	4.83	16.36	6.43	7.88	40.01
62	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	1.11	9.45	0.00	0.66
63	I13	Intron	0	1.95	1.61	3.92	4.94	6.46	2.28	24.58
64	I13_SR1	SilentIntronRegion	0	1.96	1.63	3.94	4.97	6.50	2.30	24.72
65	ER14a	ExonRegion	0	0.00	0.00	0.24	0.45	5.97	5.65	1.14
66	E14a_E15a	KnownJunction	0	0.00	0.00	1.06	0.00	3.18	5.07	0.89
67	ER15a	ExonRegion	0	0.42	1.16	0.64	2.07	1.71	3.11	0.91
68	IG12	Intergenic	0	12.25	24.59	25.55	17.16	33.11	17.40	19.94
69	IG12_AR1	ActiveIntergenicRegion	0	12.27	24.62	25.58	17.18	33.14	17.42	19.97