Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TYMS	Gene	0	43.32	19.85	41.92	8.96	713.58	19.39	108.28
2	323274	Transcript	1	21.28	5.65	67.58	2.68	1649.71	7.99	177.58
3	323224	Transcript	0	1.75	0.00	1.51	0.00	25.91	0.00	3.98
4	323250	Transcript	0	0.00	0.00	0.00	0.00	1.01	0.00	0.00
5	ER1a	ExonRegion	1	0.89	1.22	1.99	0.11	81.49	0.57	22.03
6	E1a_E2a	KnownJunction	1	2.65	6.99	10.42	2.44	340.12	5.07	73.43
7	E1a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	1.01	0.00	0.00
8	E2_Aa	NovelBoundary	1	16.89	2.84	1.41	1.57	10.79	2.71	7.47
9	ER2a	ExonRegion	1	9.75	4.40	18.62	2.80	563.74	4.99	93.90
10	E2_Da	NovelBoundary	1	22.46	1.18	2.30	1.68	2.24	7.77	14.17
11	E2a_E3a	KnownJunction	1	10.08	2.71	24.89	4.42	796.43	4.77	121.65
12	E3_Aa	NovelBoundary	0	11.57	9.12	1.70	5.93	1.18	2.17	7.11
13	ER3a	ExonRegion	1	27.81	9.37	52.06	8.43	1071.03	17.79	150.26
14	E3_Da	NovelBoundary	1	20.03	3.70	5.58	5.39	26.07	8.09	9.09
15	E3a_E4a	KnownJunction	1	21.28	5.65	67.58	2.68	1649.71	7.99	177.58
16	E3a_E5a	KnownJunction	0	1.75	0.00	1.51	0.00	25.91	0.00	3.98
17	I3	Intron	0	29.29	31.51	13.53	17.45	21.35	41.67	15.48
18	I3_SR1	SilentIntronRegion	0	29.42	31.65	13.59	17.52	21.44	41.85	15.54
19	E4_Aa	NovelBoundary	0	36.02	58.35	24.33	19.15	18.77	68.55	25.55
20	ER4a	ExonRegion	1	40.58	27.63	69.94	13.74	1549.06	41.67	236.69
21	E4_Da	NovelBoundary	1	54.73	64.13	21.31	26.28	25.15	81.12	22.96
22	E4a_E5a	KnownJunction	1	15.99	1.63	45.28	4.31	1395.41	2.73	159.88
23	I4	Intron	1	55.98	29.67	20.13	17.99	34.80	29.07	15.21
24	I4_SR2	SilentIntronRegion	1	91.37	25.53	26.54	18.44	39.52	32.64	13.80
25	I4_AR1	ActiveIntronRegion	1	15.68	5.75	2.57	3.41	11.01	2.62	3.24
26	I4_SR3	SilentIntronRegion	1	11.10	12.78	2.62	1.09	13.12	4.58	3.75
27	I4_AR2	ActiveIntronRegion	0	56.64	38.72	23.31	23.18	41.51	35.98	19.94
28	E5_Aa	NovelBoundary	0	31.56	61.87	19.20	25.30	40.80	74.18	35.11
29	ER5a	ExonRegion	1	33.70	33.35	41.01	19.26	1138.55	35.33	186.89
30	E5_Da	NovelBoundary	0	44.88	56.48	19.97	14.03	15.58	53.22	21.61
31	E5a_E6a	KnownJunction	1	15.64	1.31	31.14	0.00	1206.79	5.07	169.60
32	I5	Intron	1	44.63	24.38	17.70	8.28	16.71	17.74	11.40
33	I5_AR1	ActiveIntronRegion	1	51.43	32.05	19.56	11.55	17.29	18.28	13.45
34	I5_SR1	SilentIntronRegion	0	41.79	19.02	17.65	5.88	17.60	18.55	10.33
35	E6_Aa	NovelBoundary	0	34.06	22.51	14.26	3.82	13.30	16.67	15.54
36	I5_AR2	ActiveIntronRegion	1	18.30	8.50	5.63	2.27	6.92	9.14	4.88
37	ER6a	ExonRegion	1	15.49	8.91	40.95	0.57	1315.32	4.55	151.86
38	E6_Da	NovelBoundary	1	57.78	23.57	15.76	12.25	14.62	37.89	17.10
39	E6a_E7a	KnownJunction	1	13.44	7.28	37.56	2.71	1050.49	0.00	116.33
40	I6	Intron	1	78.10	44.58	28.82	19.54	37.97	39.51	24.66
41	I6_AR1	ActiveIntronRegion	1	62.06	37.38	21.10	17.40	29.02	51.96	19.28
42	I6_AR2	ActiveIntronRegion	1	84.85	47.64	32.05	20.46	41.73	34.50	26.93
43	E7_Aa	NovelBoundary	1	196.72	72.98	70.26	24.11	67.29	55.10	44.11
44	ER7a	ExonRegion	0	79.87	30.48	58.46	11.76	639.56	24.96	95.67
45	IG9	Intergenic	0	20.73	9.95	9.18	2.55	11.33	6.16	7.00
46	IG9_AR1	ActiveIntergenicRegion	0	23.53	7.22	9.76	1.47	18.65	3.69	10.02
47	IG9_SR1	SilentIntergenicRegion	0	29.05	14.99	15.81	4.08	11.12	9.73	7.84
48	IG9_AR2	ActiveIntergenicRegion	0	13.86	7.79	4.41	2.01	8.29	4.85	5.13