Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SMAD2	Gene	0	86.61	60.80	79.98	44.80	102.23	45.52	84.63
2	402690	Transcript	0	9.34	14.96	3.62	10.78	12.87	5.19	11.71
3	356825	Transcript	0	59.46	53.00	66.30	41.15	62.86	41.38	61.81
4	262160	Transcript	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	1.35	8.40	1.23	7.66	3.33	5.37	3.52
6	E1a_E3a	KnownJunction	1	17.32	21.52	6.01	13.90	22.41	5.01	19.89
7	ER2a	ExonRegion	0	18.83	25.63	17.45	24.58	12.80	34.39	21.01
8	E2a_E3a	KnownJunction	0	59.70	109.53	59.32	61.17	69.04	85.73	77.12
9	ER3a	ExonRegion	0	231.91	263.22	235.86	173.05	212.29	198.42	302.38
10	E3a_E4a	KnownJunction	0	315.52	263.29	270.28	199.91	236.96	234.36	394.06
11	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E3a_E5b	NovelJunction	1	10.33	52.36	27.20	40.83	11.53	43.58	8.90
13	ER4a	ExonRegion	0	411.67	283.75	407.48	199.13	329.51	225.53	458.14
14	E4a_E5b	KnownJunction	0	451.70	277.06	454.13	221.82	478.65	207.43	450.61
15	ER5a	ExonRegion	0	118.92	106.00	132.60	82.30	125.73	82.75	123.62
16	ER5b	ExonRegion	0	456.18	343.82	439.05	260.87	367.59	264.82	492.61
17	E5a_E6a	KnownJunction	0	434.34	405.76	414.53	305.78	364.37	326.69	530.56
18	ER6a	ExonRegion	0	476.49	334.58	400.01	243.49	317.76	255.21	472.33
19	E6a_E7a	KnownJunction	0	505.66	239.28	365.52	181.75	322.00	163.72	392.91
20	ER7a	ExonRegion	0	384.95	236.59	325.26	166.46	291.81	161.68	377.73
21	E7a_E8a	KnownJunction	0	268.19	195.49	272.17	162.41	284.68	161.79	349.51
22	E7a_E9a	NovelJunction	0	3.54	2.71	0.00	10.10	0.00	2.49	0.00
23	I7_AR2	ActiveIntronRegion	1	44.81	17.41	20.40	15.75	8.45	5.29	1.40
24	I7_AR3	ActiveIntronRegion	1	32.25	17.81	17.94	15.49	8.20	5.96	2.30
25	I7_SR2	SilentIntronRegion	0	21.08	6.94	9.56	3.52	4.36	3.37	1.71
26	ER8a	ExonRegion	0	333.06	223.40	297.89	202.95	284.95	181.20	355.34
27	E8a_E9a	KnownJunction	0	374.86	225.28	252.06	200.91	264.88	157.10	282.24
28	I8	Intron	1	20.60	3.70	10.59	1.50	1.76	0.78	1.33
29	I8_SR1	SilentIntronRegion	1	20.64	3.70	10.61	1.51	1.76	0.78	1.33
30	ER9a	ExonRegion	0	363.11	247.06	316.96	203.82	297.83	190.84	362.03
31	E9a_E10a	KnownJunction	0	248.21	229.72	215.60	146.75	267.07	128.18	250.84
32	ER10a	ExonRegion	0	214.97	212.62	224.10	165.16	239.56	155.36	317.62
33	E10a_E11a	KnownJunction	0	187.34	192.46	171.90	139.46	207.61	138.74	228.73
34	ER11a	ExonRegion	0	220.93	185.87	212.24	150.26	224.31	153.04	289.62
35	E11_Da	NovelBoundary	1	37.45	7.22	14.04	3.36	3.00	4.80	24.45
36	E11a_E12a	KnownJunction	0	194.89	151.51	163.92	147.43	193.39	134.64	213.19
37	I11_AR1	ActiveIntronRegion	1	24.28	4.63	8.11	2.65	6.38	2.17	7.11
38	I11_AR3	ActiveIntronRegion	1	22.06	2.93	7.28	1.59	3.29	1.62	1.88
39	ER12a	ExonRegion	0	54.46	32.99	49.74	23.75	81.48	23.72	45.65
40	IG16_AR6	ActiveIntergenicRegion	0	6.77	3.99	5.98	1.27	9.75	0.84	5.42
41	IG16_SR6	SilentIntergenicRegion	0	6.36	6.09	8.21	0.90	10.21	1.52	8.74
42	IG16_AR5	ActiveIntergenicRegion	0	8.25	4.08	4.32	1.76	8.84	0.53	5.58
43	IG16_AR4	ActiveIntergenicRegion	0	13.62	6.30	7.71	4.50	15.30	1.85	9.21