Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	KIAA1632	Gene	0	62.13	34.21	75.25	45.87	35.63	26.35	48.20
2	282041	Transcript	0	56.43	31.61	77.18	37.84	26.43	19.86	47.90
3	308403	Transcript	0	3.61	1.89	4.97	2.44	1.29	0.83	0.44
4	IG2	Intergenic	0	6.07	0.76	9.65	2.77	0.05	0.27	1.15
5	IG2_SR2	SilentIntergenicRegion	0	6.55	0.84	10.30	3.01	0.05	0.30	1.24
6	ER1a	ExonRegion	1	23.98	9.38	22.05	8.32	6.76	9.51	7.10
7	E1a_E2a	KnownJunction	0	11.55	11.53	7.21	3.79	0.00	13.21	3.88
8	ER2a	ExonRegion	0	46.81	36.11	68.28	36.14	15.20	26.43	33.61
9	E2_Da	NovelBoundary	1	22.38	6.02	17.03	7.78	0.00	5.65	0.00
10	E2a_E3a	KnownJunction	0	18.38	16.68	28.30	10.81	20.91	7.53	42.44
11	I2	Intron	1	22.69	8.81	26.93	14.92	1.46	4.78	2.26
12	I2_AR1	ActiveIntronRegion	0	7.24	3.42	12.07	5.48	1.64	9.29	0.00
13	I2_SR1	SilentIntronRegion	1	23.20	8.98	27.43	15.23	1.45	4.65	2.34
14	ER3a	ExonRegion	0	65.62	37.49	96.66	49.41	25.80	17.04	52.94
15	E3a_E4a	KnownJunction	0	51.00	31.66	89.71	36.84	21.37	16.00	61.78
16	ER4a	ExonRegion	0	58.08	32.72	87.51	50.11	25.67	21.72	50.43
17	E4a_E5a	KnownJunction	0	61.22	39.04	74.58	35.79	19.00	22.67	49.33
18	ER5a	ExonRegion	0	59.18	35.94	76.37	35.60	23.52	16.59	53.21
19	E5a_E6a	KnownJunction	0	47.17	21.07	66.89	35.71	26.58	9.25	37.43
20	ER6a	ExonRegion	0	64.65	29.24	74.56	26.74	26.78	13.73	43.69
21	E6a_E7a	KnownJunction	1	80.16	32.00	72.08	27.17	14.96	9.14	42.98
22	ER7a	ExonRegion	0	64.82	31.64	73.11	31.84	19.33	16.40	38.16
23	E7a_E8a	KnownJunction	1	68.60	42.61	70.49	38.60	22.34	13.19	38.84
24	ER8a	ExonRegion	0	84.24	44.43	102.99	49.13	30.32	15.97	45.22
25	E8a_E9a	KnownJunction	1	57.88	52.33	92.63	45.08	20.40	17.04	46.10
26	ER9a	ExonRegion	0	64.38	33.75	104.12	45.82	33.02	16.60	54.02
27	E9a_E10a	KnownJunction	0	42.69	30.58	87.83	41.91	24.48	14.58	55.55
28	E10_Aa	NovelBoundary	1	18.33	1.10	42.29	6.20	0.99	4.82	1.35
29	ER10a	ExonRegion	0	65.52	35.71	95.91	55.07	30.48	22.35	64.21
30	E10_Da	NovelBoundary	1	22.01	2.68	23.14	1.57	1.04	4.69	5.52
31	E10a_E11a	KnownJunction	0	46.05	32.94	58.21	45.38	35.41	27.01	42.03
32	ER11a	ExonRegion	0	47.35	27.14	57.43	37.20	25.12	19.00	46.52
33	E11a_E12a	KnownJunction	0	35.63	13.82	45.47	20.62	13.44	12.17	24.44
34	ER12a	ExonRegion	0	44.68	22.98	71.54	27.20	21.98	19.60	37.84
35	E12a_E13a	KnownJunction	0	56.18	20.49	100.32	28.64	24.16	18.87	35.87
36	ER13a	ExonRegion	0	59.67	27.95	94.03	41.75	23.07	28.42	51.54
37	E13a_E14a	KnownJunction	0	53.83	25.77	91.58	46.65	39.95	20.23	42.56
38	ER14a	ExonRegion	0	64.00	33.66	108.71	44.57	28.69	20.79	57.13
39	E14a_E15a	KnownJunction	0	65.89	28.50	87.64	47.87	26.35	25.38	51.52
40	ER15a	ExonRegion	0	63.43	34.76	102.95	42.27	37.08	29.04	61.61
41	E15a_E16a	KnownJunction	0	58.25	32.02	99.54	30.40	21.16	23.64	75.56
42	E15a_E17a	NovelJunction	1	15.12	4.23	9.86	9.75	1.08	0.00	1.89
43	ER16a	ExonRegion	0	66.33	39.98	85.26	39.61	33.98	20.87	66.49
44	E16a_E17a	KnownJunction	0	64.86	30.66	78.43	38.74	30.29	13.56	49.59
45	E16a_E18a	NovelJunction	0	9.25	10.82	5.32	5.39	5.33	4.40	6.59
46	E17_Aa	NovelBoundary	1	16.84	0.00	15.75	1.68	0.00	0.00	2.46
47	ER17a	ExonRegion	0	90.71	39.17	107.85	58.20	36.57	20.75	70.53
48	E17_Da	NovelBoundary	1	22.35	2.73	12.04	0.00	8.30	1.61	4.67
49	E17a_E18a	KnownJunction	0	96.33	31.34	110.51	59.19	40.07	22.16	67.20
50	ER17b	ExonRegion	0	93.84	35.80	113.36	59.19	37.16	24.74	70.20
51	I17	Intron	0	16.44	5.02	15.77	1.64	2.24	1.72	3.14
52	I17_AR1	ActiveIntronRegion	1	28.71	4.75	24.99	2.14	2.62	2.94	2.90
53	E18_Aa	NovelBoundary	0	20.70	5.28	19.63	6.85	2.90	3.16	5.85
54	ER18a	ExonRegion	0	78.09	43.13	87.35	67.86	42.86	33.37	73.65
55	E18a_E19a	KnownJunction	0	66.26	33.68	92.70	52.72	40.76	24.98	57.73
56	ER19a	ExonRegion	0	77.91	45.05	91.50	63.95	41.68	24.04	71.32
57	E19a_E20a	KnownJunction	0	83.32	41.98	101.24	56.21	58.00	24.58	69.01
58	ER20a	ExonRegion	0	82.24	51.72	87.69	49.97	48.49	22.56	67.45
59	E20a_E21a	KnownJunction	0	79.78	40.48	60.66	39.04	48.04	28.94	61.50
60	ER21a	ExonRegion	0	93.04	47.27	91.26	59.51	38.69	27.22	70.63
61	E21a_E22a	KnownJunction	0	99.44	45.40	98.97	69.98	60.33	30.98	80.47
62	ER22a	ExonRegion	0	54.89	29.68	64.53	51.13	24.67	22.35	49.89
63	E22a_E23a	KnownJunction	1	48.73	19.39	54.88	41.48	15.84	9.11	42.68
64	ER23a	ExonRegion	0	50.27	29.79	69.76	42.57	21.50	16.03	44.39
65	E23a_E24a	KnownJunction	0	71.67	28.61	76.69	48.57	32.99	31.30	50.46
66	ER24a	ExonRegion	0	84.34	41.88	102.73	72.43	44.58	34.05	65.93
67	E24a_E25a	KnownJunction	0	95.35	33.94	104.80	66.08	51.36	30.85	71.61
68	ER25a	ExonRegion	0	81.45	44.30	94.41	62.69	39.83	25.13	62.66
69	E25a_E26a	KnownJunction	0	70.08	34.91	73.16	45.03	29.00	17.90	59.52
70	ER26a	ExonRegion	0	59.37	43.29	79.84	53.79	39.25	27.68	54.87
71	E26a_E27a	KnownJunction	0	47.85	41.11	64.68	53.21	31.40	30.85	44.48
72	ER27a	ExonRegion	0	54.16	47.98	71.65	66.11	44.36	33.48	67.48
73	E27a_E28a	KnownJunction	0	37.70	36.62	59.61	63.18	36.68	38.43	79.38
74	ER28a	ExonRegion	0	87.19	50.58	89.14	67.83	57.67	33.95	88.18
75	E28a_E29a	KnownJunction	1	85.19	48.65	95.03	60.41	68.58	16.62	90.35
76	E28a_E30a	NovelJunction	0	3.52	7.83	8.56	13.63	0.00	11.50	2.25
77	ER29a	ExonRegion	0	97.87	41.52	104.20	60.04	60.60	22.22	86.67
78	E29a_E30a	KnownJunction	0	89.52	34.73	90.10	36.98	43.85	17.90	80.74
79	ER30a	ExonRegion	0	82.56	44.11	103.59	59.64	48.67	25.89	82.89
80	E30a_E31a	KnownJunction	0	65.29	33.60	89.74	54.32	55.12	24.31	83.48
81	ER31a	ExonRegion	0	58.62	52.02	90.01	67.88	33.42	28.59	59.02
82	E31a_E32a	KnownJunction	0	32.48	32.71	48.95	30.88	29.02	29.80	33.51
83	E31a_E33a	NovelJunction	1	14.24	2.81	20.16	7.48	0.00	1.61	0.86
84	ER32a	ExonRegion	0	32.97	28.40	48.41	31.81	20.53	19.22	34.44
85	E32a_E33a	KnownJunction	0	65.21	33.08	81.44	40.64	29.28	28.33	61.07
86	ER33a	ExonRegion	0	118.83	56.14	125.62	81.77	51.08	46.82	78.90
87	E33a_E34a	KnownJunction	0	194.20	68.80	147.55	125.87	65.72	78.87	86.85
88	ER34a	ExonRegion	0	171.33	69.41	163.32	101.17	69.67	78.23	80.40
89	E34a_E35a	KnownJunction	0	122.07	59.11	117.48	75.77	63.07	58.24	81.75
90	E34a_E36a	NovelJunction	1	22.15	10.93	16.83	16.90	0.00	7.05	1.66
91	E35_Aa	NovelBoundary	1	40.49	1.00	38.37	0.00	1.13	0.00	1.55
92	ER35a	ExonRegion	0	129.17	49.15	106.45	78.22	68.68	51.54	89.47
93	E35a_E36a	KnownJunction	0	116.13	54.15	93.34	82.38	70.89	39.13	58.14
94	ER36a	ExonRegion	0	114.76	60.49	128.51	89.71	66.29	46.77	83.58
95	E36a_E37a	KnownJunction	0	77.49	49.81	99.50	81.95	39.14	37.31	71.66
96	ER37a	ExonRegion	0	103.89	60.47	136.16	94.51	66.27	55.00	90.71
97	E37a_E38a	KnownJunction	0	77.74	63.71	101.70	96.17	52.88	74.40	73.09
98	ER38a	ExonRegion	0	90.76	67.55	133.58	103.00	55.07	58.75	96.30
99	E38a_E39a	KnownJunction	0	81.85	88.98	120.55	114.57	41.93	76.11	93.83
100	ER39a	ExonRegion	0	105.34	88.69	130.95	103.97	63.47	63.20	89.73
101	E39a_E40a	KnownJunction	0	66.83	67.07	89.92	83.66	43.11	52.58	53.86
102	ER40a	ExonRegion	0	58.93	47.36	68.25	67.31	39.25	43.37	43.30
103	E40a_E41a	KnownJunction	0	57.45	31.11	81.21	44.81	41.26	39.53	42.23
104	ER41a	ExonRegion	0	59.75	43.64	83.05	68.05	43.51	41.75	56.86
105	E41a_E42a	KnownJunction	0	62.95	49.26	74.02	77.70	49.59	33.85	53.07
106	ER42a	ExonRegion	0	64.79	54.44	85.06	76.81	55.76	31.00	72.23
107	E42_Da	KnownBoundary	0	7.98	1.44	9.74	2.49	2.79	1.05	1.43
108	E42a_E43a	KnownJunction	0	58.18	40.90	62.21	50.04	46.04	34.63	65.15
109	ER42b	ExonRegion	0	3.61	1.89	4.97	2.44	1.29	0.83	0.44
110	ER43a	ExonRegion	0	65.74	46.76	86.71	70.12	55.88	40.24	80.80
111	E43a_E44a	KnownJunction	0	59.08	45.34	70.30	35.84	36.58	39.58	59.82
112	E44_Aa	NovelBoundary	1	26.27	11.82	20.43	6.64	11.46	2.68	3.41
113	ER44a	ExonRegion	0	51.99	22.81	56.20	31.08	35.06	22.14	32.42