Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C18orf8	Gene	0	122.05	136.22	174.59	193.48	83.10	155.49	109.31
2	269221	Transcript	0	121.99	136.65	174.71	198.18	89.49	154.98	112.90
3	ER1a	ExonRegion	0	19.12	26.05	16.75	41.92	7.40	28.93	11.43
4	E1a_E2a	KnownJunction	1	88.26	72.19	76.34	109.34	15.33	85.38	39.64
5	E1a_E6a	NovelJunction	0	2.02	6.67	1.95	5.04	0.00	9.09	0.00
6	ER2a	ExonRegion	0	122.49	83.12	126.43	123.74	51.29	95.20	57.58
7	E2_Da	NovelBoundary	0	24.62	39.54	19.28	37.55	1.84	38.81	0.00
8	E2a_E3a	KnownJunction	0	133.14	99.83	177.16	160.22	98.83	122.66	77.85
9	E2a_E4a	NovelJunction	0	6.69	9.98	2.36	10.51	4.15	9.00	2.49
10	E2a_E5a	NovelJunction	0	11.80	5.75	3.52	10.70	0.00	11.23	0.00
11	ER3a	ExonRegion	0	209.14	134.39	270.79	237.49	84.62	181.46	106.70
12	E3_Da	NovelBoundary	1	37.15	21.02	16.86	11.46	4.56	28.46	4.10
13	E3a_E4a	KnownJunction	1	243.47	145.70	306.61	216.19	96.38	195.08	104.68
14	E3a_E5a	NovelJunction	0	8.58	8.64	2.33	11.22	1.18	19.72	2.95
15	E3a_E6a	NovelJunction	0	2.95	5.67	5.14	11.62	0.00	6.65	0.67
16	E4_Aa	NovelBoundary	1	37.05	17.23	29.59	20.94	4.68	27.36	4.96
17	ER4a	ExonRegion	1	289.27	144.04	353.00	250.71	138.73	190.87	133.38
18	E4a_E5a	KnownJunction	0	287.67	135.61	328.06	276.74	181.91	181.06	140.20
19	ER5a	ExonRegion	0	321.89	189.35	388.70	291.63	169.37	226.44	160.79
20	E5_Da	NovelBoundary	0	138.23	96.15	176.54	133.94	42.37	96.18	65.22
21	E5a_E6a	KnownJunction	1	343.63	207.31	415.13	304.53	127.11	240.37	152.59
22	ER6a	ExonRegion	0	274.62	189.98	325.33	293.63	142.05	219.61	149.29
23	E6a_E7a	KnownJunction	0	165.63	142.63	240.40	189.15	101.59	133.84	124.74
24	E7_Aa	NovelBoundary	0	24.37	37.86	22.49	17.99	2.14	24.84	2.74
25	ER7a	ExonRegion	0	135.27	148.83	200.04	193.89	102.22	129.65	114.39
26	E7a_E8a	KnownJunction	0	66.16	116.91	130.11	152.09	111.25	108.38	125.24
27	E8_Aa	NovelBoundary	1	38.12	24.35	28.65	20.21	5.28	13.56	2.21
28	ER8a	ExonRegion	0	94.98	162.40	166.17	187.70	109.23	116.80	162.26
29	E8a_E9a	KnownJunction	0	98.20	160.49	185.81	220.60	70.68	149.38	187.88
30	ER9a	ExonRegion	0	88.00	192.21	163.71	202.42	85.06	167.83	168.06
31	E9a_E10a	KnownJunction	0	74.34	171.00	138.20	200.99	68.74	135.82	146.21
32	I9	Intron	1	31.70	25.64	28.54	24.25	4.52	29.70	4.21
33	I9_AR1	ActiveIntronRegion	1	28.18	28.44	25.10	29.04	3.91	32.55	4.24
34	I9_SR2	SilentIntronRegion	1	47.40	27.55	43.38	21.89	6.83	32.66	5.36
35	E10_Aa	NovelBoundary	1	53.83	40.62	43.50	30.10	0.85	30.95	8.86
36	ER10a	ExonRegion	0	92.52	171.54	159.11	236.51	89.40	169.12	163.10
37	E10_Da	NovelBoundary	1	34.50	32.79	26.14	22.76	5.21	20.02	6.43
38	E10a_E11a	KnownJunction	1	27.61	107.48	76.81	141.36	67.06	87.69	86.73
39	I10	Intron	0	56.84	40.20	72.41	45.19	8.04	41.38	29.55
40	I10_SR1	SilentIntronRegion	0	37.41	23.98	34.33	18.61	6.07	10.89	6.29
41	I10_AR1	ActiveIntronRegion	0	58.49	47.50	86.72	61.82	8.43	57.52	38.27
42	I10_SR2	SilentIntronRegion	0	85.84	45.03	92.84	37.80	10.23	42.37	42.01
43	E11_Aa	NovelBoundary	0	50.32	63.10	66.62	39.01	6.87	28.27	46.86
44	ER11a	ExonRegion	0	44.60	115.22	104.29	149.77	69.72	127.80	95.85
45	E11_Da	NovelBoundary	0	53.96	51.49	62.91	36.71	8.48	36.82	30.67
46	E11a_E12a	KnownJunction	0	55.19	103.48	138.47	145.18	87.00	125.74	108.07
47	I11	Intron	0	44.18	39.16	49.00	25.29	10.32	27.10	24.97
48	I11_SR1	SilentIntronRegion	0	45.39	41.60	50.11	25.98	10.95	28.14	25.77
49	E12_Aa	NovelBoundary	0	62.32	44.19	67.53	42.91	9.61	50.33	30.43
50	I11_AR1	ActiveIntronRegion	0	31.80	11.47	38.99	18.57	3.24	16.55	16.75
51	ER12a	ExonRegion	0	64.75	132.55	145.71	202.19	85.45	159.27	119.15
52	E12_Da	NovelBoundary	0	38.32	56.88	47.35	44.05	8.41	44.51	38.18
53	E12a_E13a	KnownJunction	0	62.89	129.86	122.94	221.96	85.83	155.92	106.58
54	I12	Intron	0	70.29	36.62	78.07	34.16	10.01	30.91	27.88
55	I12_SR1	SilentIntronRegion	0	45.91	19.24	54.50	27.87	6.92	23.00	16.98
56	I12_AR3	ActiveIntronRegion	0	102.19	58.41	109.62	43.50	14.12	41.82	41.91
57	E13_Aa	NovelBoundary	0	59.32	70.01	59.55	41.58	10.42	40.49	33.45
58	ER13a	ExonRegion	0	81.39	164.30	149.00	215.51	73.85	159.63	116.83
59	E13_Da	NovelBoundary	0	29.31	55.80	53.85	41.26	7.26	50.68	34.31
60	E13a_E14a	KnownJunction	0	67.98	137.29	144.98	212.83	81.65	143.51	131.99
61	E13a_E15a	NovelJunction	0	0.77	7.17	0.00	5.74	0.00	9.62	0.00
62	I13	Intron	0	25.44	30.02	31.49	27.33	4.95	23.61	15.57
63	I13_AR1	ActiveIntronRegion	0	34.78	37.52	40.91	35.67	6.89	28.98	21.87
64	E14_Aa	NovelBoundary	1	117.53	76.95	110.91	70.14	8.64	56.31	35.50
65	ER14a	ExonRegion	0	76.51	135.73	135.93	199.07	78.84	118.22	109.58
66	E14_Da	NovelBoundary	0	45.10	30.37	65.69	47.92	9.41	26.45	32.03
67	E14a_E15a	KnownJunction	0	60.72	100.93	80.82	174.25	92.30	108.43	74.65
68	I14	Intron	0	88.11	45.01	118.09	46.18	9.36	35.29	48.36
69	I14_AR1	ActiveIntronRegion	0	88.28	45.10	118.31	46.26	9.38	35.35	48.45
70	E15_Aa	NovelBoundary	0	30.78	48.79	49.61	26.36	12.26	33.71	39.38
71	ER15a	ExonRegion	0	76.03	126.89	115.94	197.89	76.31	160.29	111.00
72	E15_Da	NovelBoundary	0	67.96	69.86	75.23	36.46	3.43	43.52	33.48
73	E15a_E16a	KnownJunction	0	52.09	130.54	83.33	187.47	69.62	136.33	71.34
74	I15	Intron	0	93.32	77.03	145.77	59.93	16.15	43.91	53.97
75	I15_AR1	ActiveIntronRegion	0	93.76	77.41	146.39	60.26	16.24	44.13	54.22
76	E16_Aa	NovelBoundary	0	52.09	56.12	105.00	40.18	7.38	36.93	60.62
77	ER16a	ExonRegion	0	98.74	162.32	144.91	239.07	95.24	191.54	130.47
78	E16_Da	NovelBoundary	0	95.00	70.51	166.15	66.92	14.73	46.93	73.63
79	E16a_E17a	KnownJunction	0	110.95	168.29	122.62	245.80	120.66	205.23	133.21
80	I16	Intron	0	47.94	35.63	90.52	33.47	10.11	25.57	38.06
81	I16_AR1	ActiveIntronRegion	1	51.29	36.69	96.05	35.06	10.60	27.86	40.95
82	I16_AR2	ActiveIntronRegion	1	49.54	42.07	93.62	39.15	10.04	25.00	38.82
83	E17_Aa	NovelBoundary	0	120.42	61.08	157.28	44.46	15.40	40.28	47.90
84	I16_AR3	ActiveIntronRegion	1	23.47	25.62	58.62	14.62	7.58	9.81	18.03
85	ER17a	ExonRegion	0	138.84	195.30	198.60	257.59	111.03	228.30	142.77
86	E17_Da	NovelBoundary	0	139.69	57.40	185.49	65.40	10.60	30.26	52.84
87	E17a_E18a	KnownJunction	0	85.74	170.42	126.98	247.48	84.00	200.92	118.15
88	I17	Intron	0	48.79	18.12	64.58	11.77	8.55	8.67	13.77
89	I17_AR1	ActiveIntronRegion	0	49.61	18.44	65.67	11.97	8.71	8.83	14.01
90	E18_Aa	NovelBoundary	0	100.31	55.51	171.19	67.81	14.13	29.00	58.59
91	ER18a	ExonRegion	0	92.44	149.39	148.18	205.22	99.27	209.17	116.81
92	E18_Da	NovelBoundary	0	84.22	52.20	127.62	45.38	13.23	35.75	44.94
93	E18a_E19a	KnownJunction	0	122.92	121.24	155.57	169.13	83.36	198.69	108.23
94	I18	Intron	0	18.65	14.35	44.01	5.30	3.69	9.17	15.80
95	I18_AR1	ActiveIntronRegion	0	18.99	14.61	44.81	5.37	3.72	9.31	16.05
96	E19_Aa	NovelBoundary	0	77.56	49.13	121.00	47.68	14.06	33.29	53.63
97	ER19a	ExonRegion	0	182.53	174.34	268.17	248.13	91.67	246.88	125.55
98	E19_Da	NovelBoundary	0	59.67	51.65	106.50	38.44	7.10	30.47	28.33
99	E19a_E20a	KnownJunction	0	76.47	77.95	126.01	123.73	60.08	136.65	45.89
100	I19	Intron	0	56.01	30.15	82.41	26.55	9.17	17.90	30.66
101	I19_AR1	ActiveIntronRegion	0	46.48	34.31	80.54	31.43	6.94	22.84	34.51
102	I19_AR2	ActiveIntronRegion	1	38.81	20.05	65.20	20.89	9.92	19.31	30.44
103	I19_SR1	SilentIntronRegion	0	21.14	9.77	39.36	11.60	9.06	13.26	19.89
104	I19_AR4	ActiveIntronRegion	1	80.24	29.45	97.00	23.17	12.64	11.36	27.45
105	E20_Aa	NovelBoundary	0	183.27	104.74	226.92	146.75	26.23	157.40	102.76
106	ER20a	ExonRegion	0	31.59	32.03	56.51	56.07	25.95	65.98	24.04