Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 ENOSF1 Gene 0 178.88 63.65 55.44 17.85 72.45 42.41 89.57 2 251101 Transcript 0 0 0 0 0 0 0 0 3 383578 Transcript 0 13.35 28.14 4.73 6.15 4.08 10.02 4.60 4 340116 Transcript 0 0 0 0 0 0 0 0 5 319815 Transcript 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 84.37 15.69 14.57 3.33 32.99 6.24 27.90 7 E1_Ab KnownBoundary 0 69.18 12.58 19.47 5.80 10.65 12.84 26.89 8 ER1b ExonRegion 0 57.84 12.40 14.13 6.28 10.86 7.48 19.75 9 E1_Da KnownBoundary 0 6.61 17.89 3.16 10.13 13.00 17.93 2.58 10 E1a_E2a KnownJunction 0 33.65 10.32 5.46 2.79 9.73 8.04 14.80 11 ER1c ExonRegion 0 41.08 16.35 9.30 8.16 16.64 11.59 20.48 12 ER1d ExonRegion 0 2.99 8.27 0.80 3.13 5.11 7.10 0.89 13 E1b_E2a KnownJunction 0 4.99 18.78 2.36 2.84 10.86 9.17 1.50 14 I1 Intron 0 16.32 18.76 11.20 7.53 10.28 13.32 9.29 15 I1_SR1 SilentIntronRegion 0 15.86 15.08 11.46 5.12 7.39 6.24 5.99 16 I1_SR2 SilentIntronRegion 0 18.61 18.44 9.98 5.63 9.98 8.18 6.66 17 I1_AR3 ActiveIntronRegion 0 18.38 29.83 12.74 12.97 15.00 25.20 14.77 18 I1_AR4 ActiveIntronRegion 0 18.75 10.75 14.15 5.23 7.55 3.68 7.95 19 E2_Aa NovelBoundary 0 16.61 23.17 11.34 5.85 7.15 15.17 9.24 20 ER2a ExonRegion 0 137.30 76.98 37.35 18.72 39.35 43.83 66.82 21 E2a_E3a KnownJunction 0 216.44 79.81 49.43 12.60 64.87 36.39 119.83 22 E2a_E4a KnownJunction 0 13.35 28.14 4.73 6.15 4.08 10.02 4.60 23 I2_AR1 ActiveIntronRegion 0 12.48 1.92 5.32 3.99 15.05 2.53 2.47 24 E3_Aa NovelBoundary 0 17.16 10.27 5.92 5.09 10.03 13.83 4.30 25 ER3a ExonRegion 0 127.04 74.76 37.21 18.70 59.18 43.80 95.80 26 E3a_E4a KnownJunction 0 117.46 57.56 42.23 7.37 41.06 24.76 73.38 27 ER4a ExonRegion 0 176.91 76.49 51.52 19.85 72.95 39.44 90.43 28 E4a_E5a KnownJunction 0 186.04 69.91 56.68 26.96 58.39 30.12 96.87 29 I4 Intron 0 21.80 8.74 6.01 4.20 17.49 3.86 5.93 30 I4_AR1 ActiveIntronRegion 0 22.49 10.12 7.10 4.58 15.61 3.40 5.61 31 I4_AR2 ActiveIntronRegion 0 20.11 4.55 2.66 3.08 23.80 5.43 7.01 32 E5a_E6a KnownJunction 0 80.81 49.18 30.85 13.27 47.79 20.66 74.37 33 ER5a ExonRegion 0 152.72 60.56 50.43 17.32 60.71 24.16 107.73 34 I5 Intron 0 37.25 22.17 15.61 5.13 26.27 8.82 17.85 35 I5_AR1 ActiveIntronRegion 0 50.53 25.88 20.83 6.62 34.17 9.19 18.71 36 I5_SR2 SilentIntronRegion 0 22.63 9.79 9.89 0.93 16.39 3.14 13.03 37 I5_AR2 ActiveIntronRegion 1 24.16 20.73 10.45 4.26 18.72 9.76 18.14 38 E6_Aa NovelBoundary 0 72.50 27.14 16.25 10.67 12.63 22.81 22.33 39 ER6a ExonRegion 0 226.11 76.12 62.61 18.69 75.38 44.56 123.54 40 E6_Da NovelBoundary 0 11.35 20.68 4.68 2.76 17.15 6.97 9.97 41 E6a_E7a KnownJunction 0 244.89 66.39 63.46 18.53 58.60 54.67 103.19 42 E6a_E8a NovelJunction 0 6.06 8.67 2.53 0.00 0.97 3.30 5.82 43 ER7a ExonRegion 0 306.00 77.41 80.56 27.82 67.24 61.58 137.50 44 E7_Da NovelBoundary 0 19.93 17.84 14.56 4.39 28.56 9.89 8.84 45 E7a_E8a KnownJunction 0 269.36 63.71 74.17 25.38 80.02 44.41 117.27 46 I7 Intron 0 24.08 18.36 9.89 4.33 19.70 7.04 9.62 47 I7_AR1 ActiveIntronRegion 0 24.18 18.44 9.93 4.35 19.77 7.07 9.66 48 E8_Aa NovelBoundary 1 42.16 36.75 15.62 10.51 28.61 4.66 11.44 49 ER8a ExonRegion 0 281.14 92.78 84.95 29.64 115.29 84.00 153.47 50 E8a_E9a KnownJunction 0 215.20 86.72 66.33 30.59 99.17 84.02 111.64 51 ER9a ExonRegion 0 206.51 87.82 66.85 30.96 96.56 66.69 121.29 52 E9a_E10a KnownJunction 0 145.89 60.40 42.64 25.28 86.47 35.19 86.88 53 I9_AR2 ActiveIntronRegion 0 24.53 13.55 13.58 6.83 13.54 8.44 7.83 54 E10_Aa NovelBoundary 0 29.72 8.49 11.77 5.36 25.87 15.81 11.26 55 ER10a ExonRegion 0 219.86 97.55 74.11 30.90 115.44 63.22 125.24 56 E10a_E11a KnownJunction 0 249.76 93.89 82.64 19.56 109.80 74.77 125.93 57 E11_Aa NovelBoundary 0 15.67 9.17 7.46 13.49 12.26 6.73 7.09 58 ER11a ExonRegion 0 236.36 112.48 82.22 30.93 111.33 71.79 145.46 59 E11a_E12a KnownJunction 0 276.35 61.16 70.89 16.07 102.01 28.27 126.65 60 E11a_E13a KnownJunction 0 7.51 4.57 2.89 0.00 7.58 2.55 11.68 61 E11a_E15a NovelJunction 1 30.73 19.89 24.37 8.59 9.84 37.52 11.15 62 E11a_E16a NovelJunction 0 0.58 7.67 3.85 1.68 0.00 7.66 0.89 63 ER12a ExonRegion 0 300.00 65.69 64.16 14.16 101.42 41.39 138.73 64 E12a_E13a KnownJunction 0 240.92 56.27 43.24 11.27 105.01 39.02 99.25 65 E12a_E14a NovelJunction 0 4.77 11.48 8.67 5.72 1.18 4.64 9.96 66 I12 Intron 0 16.96 13.20 8.29 5.63 13.73 6.24 7.92 67 I12_AR1 ActiveIntronRegion 0 16.98 13.22 8.29 5.64 13.75 6.25 7.93 68 E13_Aa NovelBoundary 0 13.84 12.87 8.21 10.16 9.11 4.21 8.13 69 ER13a ExonRegion 0 322.74 63.19 72.52 12.79 146.31 37.91 134.28 70 E13a_E14a KnownJunction 1 313.72 45.63 76.98 4.25 136.47 37.36 112.49 71 ER14a ExonRegion 0 244.99 64.45 71.12 11.26 111.75 38.32 107.80 72 E14a_E15a KnownJunction 0 282.18 71.62 78.42 17.64 89.21 39.13 109.39 73 ER15a ExonRegion 0 279.49 96.00 87.45 28.89 109.78 65.08 123.72 74 E15a_E16a KnownJunction 0 227.90 99.65 86.88 29.75 100.53 79.38 113.48 75 ER16a ExonRegion 0 184.02 63.41 74.56 20.55 64.28 50.75 83.82 76 E16_Da KnownBoundary 0 49.27 21.20 20.87 17.12 23.81 17.53 32.22 77 ER16b ExonRegion 0 23.59 13.70 11.54 4.64 15.67 5.28 14.75 78 IG9 Intergenic 0 20.73 9.95 9.18 2.55 11.33 6.16 7.00 79 IG9_AR2 ActiveIntergenicRegion 0 13.86 7.79 4.41 2.01 8.29 4.85 5.13 80 IG9_SR1 SilentIntergenicRegion 0 29.05 14.99 15.81 4.08 11.12 9.73 7.84 81 IG9_AR1 ActiveIntergenicRegion 0 23.53 7.22 9.76 1.47 18.65 3.69 10.02