Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	LAMA1	Gene	0	4.47	7.51	77.70	96.24	152.40	40.96	111.62
2	389658	Transcript	0	4.44	7.08	77.56	93.29	147.74	38.32	109.65
3	344342	Transcript	0	1.75	5.14	28.63	39.51	34.93	20.80	37.66
4	ER1a	ExonRegion	0	0.02	0.00	1.60	23.13	8.75	9.84	8.73
5	E1a_E2a	KnownJunction	1	0.00	0.00	2.49	21.29	12.45	13.45	13.06
6	ER2a	ExonRegion	1	0.37	0.00	21.30	71.42	37.61	23.00	48.76
7	E2a_E3a	KnownJunction	1	0.70	0.00	24.10	85.96	52.95	31.97	52.57
8	ER3a	ExonRegion	1	0.44	0.00	42.04	95.92	56.89	29.64	67.87
9	E3a_E4a	KnownJunction	1	0.00	0.00	45.61	99.37	49.03	40.20	83.88
10	ER4a	ExonRegion	1	0.65	0.00	65.44	92.16	81.21	42.01	88.90
11	E4a_E5a	KnownJunction	1	0.87	0.00	77.07	102.76	75.13	48.00	79.42
12	ER5a	ExonRegion	1	0.56	0.33	76.59	91.74	97.05	37.62	88.79
13	E5a_E6a	KnownJunction	1	1.03	1.52	66.18	82.52	91.08	20.88	60.13
14	ER6a	ExonRegion	1	1.48	0.84	63.15	75.04	87.70	28.54	79.34
15	E6a_E7a	KnownJunction	1	1.37	1.63	60.28	105.71	89.28	23.88	85.06
16	ER7a	ExonRegion	1	1.88	0.42	61.94	83.78	89.82	24.38	83.32
17	E7a_E8a	KnownJunction	1	1.64	0.00	95.10	74.01	112.61	34.25	86.35
18	ER8a	ExonRegion	1	1.36	0.00	90.74	82.18	96.64	31.92	95.06
19	E8a_E9a	KnownJunction	1	0.90	0.00	100.03	55.59	127.92	28.38	105.52
20	ER9a	ExonRegion	1	0.35	0.87	78.73	64.38	94.34	19.29	77.92
21	E9a_E10a	KnownJunction	1	1.45	0.00	78.38	64.56	77.69	11.98	59.89
22	ER10a	ExonRegion	1	0.64	0.57	61.19	56.64	63.18	13.63	61.69
23	E10a_E11a	KnownJunction	1	0.65	0.00	59.36	47.92	57.49	14.23	53.05
24	ER11a	ExonRegion	1	1.20	0.00	46.86	39.96	49.54	19.75	55.97
25	E11_Da	NovelBoundary	1	0.00	0.00	16.67	22.08	2.03	16.48	2.02
26	E11a_E12a	KnownJunction	0	0.00	0.00	22.09	14.90	44.01	2.57	46.52
27	I11_AR1	ActiveIntronRegion	0	1.72	3.33	17.04	5.13	3.99	4.93	5.47
28	ER12a	ExonRegion	0	4.22	5.12	45.83	46.60	58.54	17.88	58.74
29	E12a_E13a	KnownJunction	0	7.09	6.54	57.73	61.74	105.70	16.64	92.04
30	ER13a	ExonRegion	1	6.78	10.43	79.64	79.46	124.48	23.07	121.25
31	E13a_E14a	KnownJunction	0	6.38	9.90	82.69	95.23	154.13	34.06	145.87
32	ER14a	ExonRegion	0	11.16	11.70	110.40	110.95	175.42	39.35	157.19
33	E14a_E15a	KnownJunction	0	9.65	10.82	110.71	88.05	206.76	37.60	117.99
34	ER15a	ExonRegion	0	7.40	8.27	80.25	79.46	148.19	37.15	112.55
35	E15a_E16a	KnownJunction	0	1.54	9.67	62.77	69.73	105.81	28.14	97.34
36	ER16a	ExonRegion	0	4.91	6.13	53.68	67.67	97.54	31.63	98.70
37	E16a_E17a	KnownJunction	0	4.81	8.20	42.32	65.72	90.32	30.20	97.90
38	ER17a	ExonRegion	0	2.43	7.99	39.51	49.40	74.17	28.26	78.60
39	E17a_E18a	KnownJunction	1	3.19	9.33	38.66	55.83	58.02	28.54	81.03
40	ER18a	ExonRegion	0	3.73	5.91	45.35	51.81	70.37	20.33	82.48
41	E18a_E19a	KnownJunction	1	3.00	5.41	41.88	64.61	63.42	12.27	71.89
42	ER19a	ExonRegion	0	2.83	7.89	44.84	74.34	69.01	17.49	82.02
43	E19a_E20a	KnownJunction	0	1.00	4.68	33.81	61.12	78.01	17.55	84.67
44	ER20a	ExonRegion	0	3.68	7.02	48.24	86.26	123.87	25.07	119.33
45	E20a_E21a	KnownJunction	0	4.49	9.51	52.22	75.99	94.98	34.46	142.83
46	ER21a	ExonRegion	1	1.28	8.33	34.17	80.67	87.24	25.08	113.32
47	E21a_E22a	KnownJunction	1	4.51	12.58	45.08	105.28	144.08	25.43	155.84
48	ER22a	ExonRegion	0	1.88	9.87	38.65	83.68	85.47	18.60	100.14
49	E22a_E23a	KnownJunction	1	0.00	6.59	39.13	69.68	89.24	7.05	73.05
50	ER23a	ExonRegion	1	2.18	9.73	34.03	48.65	68.18	15.43	73.37
51	E23a_E24a	KnownJunction	1	0.68	10.59	36.74	37.55	50.35	17.31	61.11
52	ER24a	ExonRegion	1	2.12	8.64	36.45	45.27	53.38	24.72	60.90
53	E24a_E25a	KnownJunction	1	1.00	9.17	25.82	50.93	41.24	24.23	48.90
54	ER25a	ExonRegion	1	1.43	6.93	24.05	39.99	38.00	20.26	39.35
55	E25a_E26a	KnownJunction	1	2.84	6.73	27.45	39.66	44.22	17.02	42.12
56	ER26a	ExonRegion	0	7.98	7.89	85.73	68.19	121.91	24.45	76.93
57	E26a_E27a	KnownJunction	0	19.56	10.51	137.11	79.43	201.87	29.80	93.38
58	ER27a	ExonRegion	1	16.76	12.45	141.69	95.92	188.21	28.47	122.07
59	E27a_E28a	KnownJunction	0	10.40	8.41	92.04	85.93	181.01	22.62	90.89
60	ER28a	ExonRegion	1	10.15	8.96	91.60	78.15	154.78	20.62	106.96
61	E28a_E29a	KnownJunction	0	7.76	2.42	63.22	80.35	156.11	15.95	107.23
62	E29_Aa	NovelBoundary	1	1.17	0.00	20.82	0.00	0.92	0.00	0.00
63	ER29a	ExonRegion	0	2.50	6.07	63.24	79.90	124.01	22.33	107.98
64	E29a_E30a	KnownJunction	0	3.17	8.67	61.38	72.47	135.76	24.74	115.08
65	ER30a	ExonRegion	0	3.92	9.62	56.51	84.67	155.84	20.03	119.10
66	E30a_E31a	KnownJunction	1	4.29	13.45	50.60	99.94	96.89	32.21	126.50
67	E31_Aa	NovelBoundary	1	1.90	0.00	31.08	12.54	2.35	0.00	0.00
68	ER31a	ExonRegion	0	3.06	11.48	62.46	98.70	142.98	32.86	120.34
69	E31a_E32a	KnownJunction	0	4.42	6.17	63.70	73.09	162.32	37.92	105.57
70	ER32a	ExonRegion	0	4.68	6.31	68.13	71.62	142.83	27.40	103.25
71	E32a_E33a	KnownJunction	0	5.09	6.17	98.80	92.92	116.12	26.85	97.85
72	ER33a	ExonRegion	0	5.41	5.56	102.31	75.93	123.78	22.88	100.42
73	E33a_E34a	KnownJunction	1	8.23	5.54	151.15	73.12	126.33	32.80	91.21
74	ER34a	ExonRegion	0	8.03	5.26	160.01	76.27	142.46	32.73	127.39
75	E34a_E35a	KnownJunction	0	7.98	5.65	109.04	70.65	150.26	26.16	128.88
76	ER35a	ExonRegion	0	6.76	4.45	131.79	74.72	139.68	34.62	127.14
77	E35a_E36a	KnownJunction	0	7.51	4.89	161.52	94.11	128.47	37.92	160.04
78	ER36a	ExonRegion	0	9.66	5.12	175.07	119.62	215.27	53.48	157.78
79	E36a_E37a	KnownJunction	0	9.15	7.43	126.99	127.98	175.80	62.77	125.60
80	ER37a	ExonRegion	0	11.22	10.31	118.35	113.49	203.11	41.10	125.44
81	E37a_E38a	KnownJunction	1	6.14	1.00	88.48	94.28	184.65	43.79	134.49
82	ER38a	ExonRegion	0	9.80	10.79	102.82	112.84	248.04	42.75	157.12
83	E38a_E39a	KnownJunction	0	7.61	9.17	121.86	129.50	268.15	36.02	153.12
84	ER39a	ExonRegion	0	7.81	9.73	113.23	134.73	250.65	46.27	178.39
85	E39a_E40a	KnownJunction	0	8.56	8.14	121.31	127.33	307.23	41.16	168.37
86	ER40a	ExonRegion	0	8.44	9.43	122.16	147.81	273.00	45.70	183.85
87	E40a_E41a	KnownJunction	0	10.48	9.80	84.74	96.63	199.64	37.25	151.94
88	ER41a	ExonRegion	0	7.84	6.98	108.29	116.15	225.52	41.03	137.16
89	E41a_E42a	KnownJunction	0	10.85	9.14	138.85	132.83	291.94	43.66	169.37
90	ER42a	ExonRegion	0	11.20	9.79	142.37	152.08	262.18	49.62	199.21
91	E42a_E43a	KnownJunction	0	5.06	7.75	75.43	119.93	123.45	32.86	134.30
92	ER43a	ExonRegion	0	5.05	8.71	75.83	102.07	155.58	32.71	104.13
93	E43a_E44a	KnownJunction	0	3.79	3.07	55.84	85.93	145.44	33.53	106.80
94	ER44a	ExonRegion	0	4.78	7.70	78.87	89.20	150.65	44.82	115.54
95	E44a_E45a	KnownJunction	0	4.66	8.43	66.79	65.29	133.27	41.57	104.95
96	ER45a	ExonRegion	0	3.31	7.80	80.10	77.83	155.03	39.22	106.50
97	E45a_E46a	KnownJunction	0	1.49	8.33	66.52	79.49	127.37	39.99	102.77
98	ER46a	ExonRegion	0	1.85	7.55	81.29	89.82	140.52	44.86	94.55
99	E46a_E47a	KnownJunction	0	1.97	16.16	102.70	124.24	161.25	65.36	136.69
100	ER47a	ExonRegion	0	2.58	11.51	132.97	126.69	199.61	61.53	131.39
101	E47a_E48a	KnownJunction	0	2.82	8.75	126.39	120.58	178.45	61.37	130.62
102	ER48a	ExonRegion	0	1.90	5.61	124.47	109.55	192.18	51.14	125.47
103	E48a_E49a	KnownJunction	0	1.44	6.49	112.16	110.67	214.99	61.93	110.71
104	ER49a	ExonRegion	0	2.79	7.74	109.91	109.35	187.67	40.56	125.64
105	E49_Ab	KnownBoundary	0	3.47	11.80	110.65	136.38	249.64	38.67	126.19
106	ER49b	ExonRegion	0	3.12	9.76	122.58	126.72	256.78	54.91	146.46
107	E49_Da	NovelBoundary	1	1.77	2.15	21.64	10.48	8.14	2.30	5.35
108	E49a_E50a	KnownJunction	0	2.90	13.11	118.12	96.88	260.68	56.39	168.87
109	ER50a	ExonRegion	0	5.82	11.95	115.81	124.72	221.40	64.29	164.46
110	E50a_E51a	KnownJunction	0	8.50	9.93	89.12	121.88	241.78	49.82	141.32
111	ER51a	ExonRegion	0	7.36	9.74	108.53	131.48	225.93	54.84	174.93
112	E51a_E52a	KnownJunction	0	4.06	10.69	79.30	97.53	166.81	37.22	127.94
113	I51	Intron	0	1.48	1.35	20.02	10.25	8.11	4.95	3.73
114	I51_SR1	SilentIntronRegion	0	1.29	1.41	21.00	9.91	6.39	4.91	3.08
115	I51_SR2	SilentIntronRegion	0	2.12	1.48	28.35	12.74	11.75	6.24	5.17
116	E52_Aa	NovelBoundary	1	2.52	0.00	21.87	16.15	9.96	8.98	5.85
117	ER52a	ExonRegion	0	7.94	12.23	92.93	103.87	223.72	36.05	139.89
118	E52a_E53a	KnownJunction	0	5.37	13.24	106.92	105.11	276.29	27.84	151.04
119	ER53a	ExonRegion	0	2.61	10.89	79.49	113.44	235.38	38.03	130.49
120	E53a_E54a	KnownJunction	0	2.70	13.92	90.83	137.41	330.32	54.11	156.56
121	ER54a	ExonRegion	0	5.34	13.98	100.79	152.30	293.97	74.58	196.48
122	E54a_E55a	KnownJunction	0	5.94	15.08	96.80	145.37	312.09	81.34	196.53
123	ER55a	ExonRegion	0	6.97	17.36	105.58	133.93	293.16	69.71	176.27
124	E55a_E56a	KnownJunction	0	6.59	13.29	77.77	101.46	282.77	64.37	127.46
125	E56a_E56b	KnownJunction	1	1.03	9.20	32.66	45.78	0.00	20.23	39.83
126	E56_Ab	NovelBoundary	1	7.28	22.57	92.39	109.83	271.54	52.80	129.34
127	ER56a	ExonRegion	1	6.79	22.21	92.67	118.16	286.27	69.00	140.32
128	ER56b	ExonRegion	1	6.92	23.08	95.92	113.97	272.43	65.22	133.97
129	ER56c	ExonRegion	0	3.94	19.35	101.29	114.72	221.48	59.59	128.29
130	E56_Db	KnownBoundary	0	1.03	3.76	42.97	56.59	80.13	26.16	57.00
131	E56b_E56c	KnownJunction	0	3.07	6.04	49.85	70.25	103.88	42.16	71.92
132	E56_Ac	NovelBoundary	0	0.00	4.39	34.29	46.84	59.02	21.12	43.08
133	ER56d	ExonRegion	0	2.31	9.72	92.80	120.12	186.00	65.80	120.98
134	E56c_E57a	KnownJunction	0	3.32	8.12	65.73	96.44	196.41	46.26	86.07
135	ER56e	ExonRegion	0	4.29	9.26	84.18	119.36	185.68	62.74	113.38
136	ER56f	ExonRegion	0	1.15	0.18	3.38	2.50	0.91	0.00	1.23
137	ER57a	ExonRegion	0	6.60	10.35	90.55	118.54	214.82	62.20	136.52
138	E57a_E58a	KnownJunction	0	6.68	7.64	105.03	115.52	298.72	64.19	162.72
139	ER58a	ExonRegion	0	4.57	9.36	81.04	121.06	203.59	67.66	123.98
140	E58a_E59a	KnownJunction	0	3.57	7.33	75.73	133.80	260.52	62.82	146.78
141	ER59a	ExonRegion	0	3.89	12.00	78.00	153.76	239.57	69.13	152.24
142	E59a_E60a	KnownJunction	0	3.40	16.08	81.93	172.27	249.69	86.24	155.44
143	ER60a	ExonRegion	0	4.65	14.98	84.02	197.25	335.19	95.42	181.83
144	E60a_E61a	KnownJunction	1	5.02	10.01	83.53	211.20	359.69	114.86	187.88
145	ER61a	ExonRegion	0	4.47	13.23	82.19	214.34	355.52	105.32	213.66
146	E61a_E62a	KnownJunction	0	2.42	16.66	70.49	195.71	385.54	122.23	210.33
147	ER62a	ExonRegion	1	4.38	9.95	77.04	197.53	301.82	107.28	169.26
148	E62a_E63a	KnownJunction	0	2.75	13.56	86.11	210.36	291.85	92.86	140.92
149	ER63a	ExonRegion	1	2.65	5.48	55.53	112.07	129.00	89.35	75.06