Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	LAMA3	Gene	0	30.78	15.80	818.14	196.29	2.78	3.69	7947.74
2	399516	Transcript	0	0.00	3.01	0.00	0.00	0.33	0.64	2.00
3	313654	Transcript	0	20.02	9.91	14.67	12.33	2.16	1.21	44.35
4	269217	Transcript	1	3.15	10.05	720.24	278.02	0.00	1.24	9843.20
5	ER1a	ExonRegion	0	1.93	2.70	1.60	3.47	0.32	0.00	3.77
6	E1a_E2a	KnownJunction	0	3.35	6.57	6.71	4.63	0.00	0.00	9.23
7	ER2a	ExonRegion	0	9.48	8.62	7.94	8.42	1.75	0.44	17.08
8	E2a_E3a	KnownJunction	0	15.64	5.57	11.14	5.69	3.50	1.39	22.03
9	ER3a	ExonRegion	0	19.74	10.75	12.16	9.11	0.76	2.08	27.60
10	E3a_E4a	KnownJunction	0	22.87	6.73	14.11	11.89	2.21	2.87	19.81
11	ER4a	ExonRegion	0	21.12	9.30	15.57	11.02	2.40	0.78	24.25
12	E4a_E5a	KnownJunction	0	22.25	11.74	12.83	5.96	2.10	1.66	25.28
13	ER5a	ExonRegion	0	21.15	12.21	13.10	7.34	2.52	2.92	29.47
14	E5a_E6a	KnownJunction	1	17.47	8.09	7.52	3.28	0.00	1.26	24.88
15	ER6a	ExonRegion	1	15.51	13.38	7.12	6.68	2.60	2.48	22.93
16	E6a_E7a	KnownJunction	0	13.57	10.59	6.64	6.37	0.00	1.39	17.28
17	ER7a	ExonRegion	0	8.17	9.83	4.57	6.42	2.02	0.67	17.60
18	E7a_E8a	KnownJunction	0	10.45	5.36	7.26	7.96	3.16	0.00	17.53
19	ER8a	ExonRegion	0	11.69	5.95	7.31	9.12	1.78	0.72	17.97
20	E8a_E9a	KnownJunction	0	15.72	8.98	9.41	2.63	1.06	0.00	21.28
21	ER9a	ExonRegion	1	22.01	9.96	10.73	7.74	3.75	0.09	22.07
22	E9a_E10a	KnownJunction	1	26.59	10.17	6.64	1.46	1.75	1.02	25.14
23	ER10a	ExonRegion	1	47.78	9.70	15.04	7.58	2.77	1.93	30.34
24	E10a_E11a	KnownJunction	1	54.53	10.04	18.28	11.95	3.20	1.18	36.22
25	ER11a	ExonRegion	1	46.72	10.18	15.11	9.05	2.52	1.87	36.56
26	E11a_E12a	KnownJunction	1	36.78	9.33	12.32	8.70	2.95	3.32	29.88
27	ER12a	ExonRegion	1	25.88	10.88	9.84	5.82	1.84	1.21	23.58
28	E12a_E13a	KnownJunction	0	0.00	4.39	0.00	0.00	0.00	1.15	2.46
29	E12a_E14a	KnownJunction	0	8.73	6.94	5.81	7.40	1.13	0.00	13.10
30	ER13a	ExonRegion	0	0.00	1.63	0.00	0.00	0.65	0.12	1.54
31	ER14a	ExonRegion	0	9.39	5.04	7.35	7.85	1.77	0.68	22.17
32	E14a_E15a	KnownJunction	0	4.86	2.73	4.35	10.19	1.18	0.00	11.78
33	ER15a	ExonRegion	0	10.69	5.51	5.75	7.14	1.50	0.00	24.60
34	E15a_E16a	KnownJunction	0	12.83	5.78	5.89	1.65	1.11	0.00	29.81
35	ER16a	ExonRegion	0	12.85	4.36	11.18	7.17	3.05	0.00	22.25
36	E16a_E17a	KnownJunction	0	12.28	0.00	6.85	1.30	4.26	0.00	25.19
37	ER17a	ExonRegion	0	15.34	1.51	9.93	4.52	1.67	0.00	29.13
38	E17a_E18a	KnownJunction	0	15.59	2.31	8.52	7.75	2.19	0.00	26.07
39	ER18a	ExonRegion	1	25.87	4.69	13.18	6.99	1.18	0.00	27.47
40	E18a_E19a	KnownJunction	1	27.59	5.44	13.26	12.19	0.00	0.00	30.73
41	ER19a	ExonRegion	1	30.12	4.76	11.98	9.73	2.48	0.81	31.23
42	E19a_E20a	KnownJunction	1	47.98	3.94	11.35	14.30	6.62	1.10	25.87
43	ER20a	ExonRegion	1	45.17	6.27	15.27	13.84	2.45	1.27	32.50
44	E20a_E21a	KnownJunction	1	36.98	2.92	4.43	11.70	3.14	0.00	31.08
45	ER21a	ExonRegion	1	30.89	7.56	13.13	8.67	3.08	1.25	31.72
46	E21a_E22a	KnownJunction	0	19.46	8.28	11.61	7.31	2.05	4.98	30.73
47	ER22a	ExonRegion	0	20.40	6.87	12.52	9.54	3.18	3.14	32.19
48	E22a_E23a	KnownJunction	0	12.00	7.12	11.55	8.05	2.17	3.46	24.84
49	ER23a	ExonRegion	0	12.18	7.30	11.06	7.58	2.00	1.25	25.68
50	E23a_E24a	KnownJunction	1	18.63	5.10	8.45	3.36	2.95	2.57	29.31
51	ER24a	ExonRegion	0	13.48	9.94	10.93	6.46	1.90	2.09	29.79
52	E24a_E25a	KnownJunction	1	19.23	13.61	8.03	8.99	1.96	1.31	35.61
53	ER25a	ExonRegion	0	13.63	14.42	13.00	5.76	1.72	4.78	33.83
54	E25a_E26a	KnownJunction	0	23.40	8.22	13.03	7.99	2.05	8.31	39.71
55	ER26a	ExonRegion	0	23.65	13.50	16.92	12.74	1.97	4.80	46.57
56	E26a_E27a	KnownJunction	0	28.41	17.26	15.20	11.76	1.18	2.39	34.61
57	ER27a	ExonRegion	0	34.85	12.89	24.92	17.64	3.01	0.81	59.60
58	E27a_E28a	KnownJunction	1	46.23	19.60	19.69	22.13	3.99	0.00	70.44
59	ER28a	ExonRegion	0	39.02	17.01	24.22	23.33	3.93	2.73	67.72
60	E28a_E29a	KnownJunction	1	19.31	12.66	11.63	8.64	1.18	2.55	61.51
61	ER29a	ExonRegion	0	27.97	14.63	15.65	18.62	1.28	1.98	56.95
62	E29a_E30a	KnownJunction	0	30.23	12.74	20.48	16.77	5.51	2.81	66.47
63	ER30a	ExonRegion	0	27.30	11.58	27.26	25.17	2.10	2.01	58.87
64	E30a_E31a	KnownJunction	0	19.09	15.00	25.84	22.84	2.05	0.00	53.03
65	ER31a	ExonRegion	0	31.63	13.26	33.36	26.26	2.56	0.75	65.35
66	E31a_E32a	KnownJunction	0	31.24	11.90	33.60	20.67	0.85	0.00	53.51
67	ER32a	ExonRegion	0	12.97	8.99	12.49	13.71	0.77	0.03	34.88
68	E32a_E33a	KnownJunction	0	9.18	11.77	6.54	11.46	2.19	0.00	26.70
69	ER33a	ExonRegion	1	10.90	4.31	7.52	10.28	0.85	1.89	37.68
70	E33a_E34a	KnownJunction	1	11.35	1.63	6.47	6.85	0.00	0.00	55.66
71	ER34a	ExonRegion	1	17.30	9.93	27.68	13.61	2.11	2.39	63.95
72	E34a_E35a	KnownJunction	1	13.69	14.03	20.68	18.29	2.01	1.07	78.58
73	ER35a	ExonRegion	1	17.64	13.72	30.81	19.83	2.13	0.74	83.73
74	E35a_E36a	KnownJunction	1	19.09	12.69	19.39	20.51	4.10	0.00	70.22
75	ER36a	ExonRegion	1	13.74	11.92	20.97	13.71	2.85	0.00	71.07
76	E36a_E37a	KnownJunction	1	13.59	17.63	14.73	10.19	0.00	0.00	59.35
77	ER37a	ExonRegion	1	12.57	12.98	18.04	17.56	2.16	0.00	66.64
78	E37a_E38a	KnownJunction	1	12.35	15.50	20.32	14.41	4.10	0.00	84.58
79	ER38a	ExonRegion	0	7.35	12.50	12.35	8.45	3.30	0.00	58.79
80	E38a_E39a	KnownJunction	0	5.72	10.88	10.22	16.82	0.00	0.00	50.42
81	ER39a	ExonRegion	0	10.65	22.13	14.36	17.64	1.62	0.44	61.97
82	E39a_E41a	KnownJunction	1	14.27	21.94	17.82	16.39	0.00	0.00	55.32
83	E40_Aa	NovelBoundary	1	2.07	5.44	765.67	214.56	0.00	0.00	9146.41
84	ER40a	ExonRegion	1	1.44	6.49	348.34	189.09	0.00	0.17	4682.31
85	E40a_E41a	KnownJunction	1	4.86	13.61	1092.13	366.95	0.00	2.30	15004.09
86	ER41a	ExonRegion	1	18.11	30.38	928.84	366.31	2.30	4.94	14027.20
87	E41a_E42a	KnownJunction	1	16.36	34.10	646.58	304.40	1.94	1.53	10242.32
88	E41a_E43a	NovelJunction	0	0.00	0.00	12.65	11.73	0.00	0.00	4.67
89	ER42a	ExonRegion	1	18.14	23.45	678.55	336.11	2.72	4.61	10974.46
90	E42a_E43a	KnownJunction	1	21.70	15.84	723.96	336.50	1.01	3.32	12439.21
91	ER43a	ExonRegion	1	18.67	21.45	785.89	367.10	0.92	2.62	12025.59
92	E43a_E44a	KnownJunction	1	16.91	25.98	827.83	354.87	1.18	5.74	10326.62
93	ER44a	ExonRegion	1	17.10	24.86	806.23	369.59	1.57	4.16	11370.88
94	E44a_E45a	KnownJunction	1	17.07	18.57	741.98	361.45	1.13	1.23	10988.40
95	ER45a	ExonRegion	1	15.10	23.65	846.29	337.49	0.57	6.15	11199.71
96	E45a_E46a	KnownJunction	1	13.05	22.86	770.77	274.49	1.13	7.53	9572.36
97	ER46a	ExonRegion	0	23.26	18.10	1036.51	309.31	1.54	7.89	10568.93
98	E46a_E47a	KnownJunction	0	33.03	15.76	1749.60	366.49	2.26	12.62	14744.25
99	ER47a	ExonRegion	0	45.09	25.22	1802.86	459.98	0.71	10.14	13689.69
100	E47a_E48a	KnownJunction	0	79.61	42.66	2551.91	650.19	0.00	17.13	18956.53
101	ER48a	ExonRegion	0	55.89	27.19	2267.26	474.68	2.17	12.11	16525.40
102	E48a_E49a	KnownJunction	0	41.16	21.41	1647.06	357.95	0.00	9.41	12556.53
103	ER49a	ExonRegion	0	35.71	17.69	1503.36	337.86	1.71	7.92	12595.36
104	E49a_E50a	KnownJunction	0	28.92	18.71	1463.09	274.11	3.16	1.02	12401.25
105	ER50a	ExonRegion	0	31.40	17.87	1485.30	271.12	2.44	4.77	11440.19
106	E50a_E51a	KnownJunction	1	30.29	22.83	1642.63	242.71	1.18	5.74	10978.30
107	ER51a	ExonRegion	0	45.76	20.94	1986.04	309.57	2.59	6.33	13213.70
108	E51a_E52a	KnownJunction	0	42.93	18.50	1706.46	324.15	2.28	8.63	12148.56
109	ER52a	ExonRegion	0	46.92	21.47	1863.40	359.77	3.35	7.89	14232.00
110	E52a_E53a	KnownJunction	0	40.37	19.47	1452.73	304.07	1.18	9.27	12187.01
111	ER53a	ExonRegion	0	51.79	23.24	1528.96	388.02	2.58	5.21	14580.48
112	E53a_E54a	KnownJunction	0	45.81	28.19	1832.29	491.00	4.45	7.61	16875.05
113	ER54a	ExonRegion	1	68.51	21.76	2287.08	555.09	5.31	6.56	21569.17
114	E54a_E55a	KnownJunction	1	60.40	20.31	2089.33	530.17	2.21	7.29	22555.26
115	E54a_E57a	NovelJunction	0	2.44	2.65	151.64	51.42	0.88	0.00	155.88
116	ER55a	ExonRegion	0	50.70	21.98	2016.73	454.20	2.95	6.03	22188.91
117	E55a_E56a	KnownJunction	0	46.48	18.34	1925.28	420.10	5.42	7.83	20759.61
118	ER56a	ExonRegion	0	39.42	26.97	1666.57	418.62	5.13	6.48	20765.01
119	E56a_E57a	KnownJunction	1	32.76	29.06	1742.52	434.43	8.69	8.79	22679.36
120	ER57a	ExonRegion	1	36.40	22.92	1669.50	456.90	6.38	5.08	20644.97
121	E57a_E58a	KnownJunction	1	26.30	16.92	1400.04	400.19	3.00	2.68	14649.78
122	ER58a	ExonRegion	0	34.09	18.46	1546.80	367.87	5.42	3.50	17591.03
123	E58a_E59a	KnownJunction	0	49.59	18.02	1559.34	280.15	0.00	0.00	14035.96
124	ER59a	ExonRegion	0	49.75	21.63	1673.13	314.10	4.92	4.52	14033.18
125	E59a_E60a	KnownJunction	0	121.10	21.54	3017.73	412.84	3.30	8.63	18715.02
126	ER60a	ExonRegion	0	90.36	26.07	2798.14	388.85	5.51	4.75	18501.73
127	E60a_E61a	KnownJunction	0	51.22	25.82	1990.74	249.64	0.00	1.53	14204.70
128	ER61a	ExonRegion	0	41.95	18.44	1671.81	291.07	2.76	2.46	13951.35
129	E61a_E62a	KnownJunction	1	23.35	16.18	1304.57	269.10	1.78	3.03	13161.76
130	ER62a	ExonRegion	0	28.68	16.87	1360.21	287.29	2.89	4.03	14446.00
131	E62a_E63a	KnownJunction	0	27.05	14.58	1375.10	244.80	2.28	5.41	12208.75
132	ER63a	ExonRegion	0	41.54	19.13	1815.04	334.13	3.50	4.42	16173.74
133	E63a_E64a	KnownJunction	0	42.53	14.45	1753.54	298.35	9.31	12.09	14547.74
134	ER64a	ExonRegion	0	79.31	22.34	2670.78	367.56	4.24	5.24	18710.30
135	E64a_E65a	KnownJunction	0	114.18	23.59	3264.19	427.74	7.03	8.31	22046.83
136	ER65a	ExonRegion	0	96.25	30.81	2988.20	467.10	4.96	9.24	20038.46
137	E65a_E66a	KnownJunction	0	65.98	24.41	2246.26	406.56	4.01	7.16	17508.25
138	ER66a	ExonRegion	0	58.22	18.20	2042.61	357.97	4.30	10.86	16789.68
139	E66a_E67a	KnownJunction	1	21.41	18.34	1442.37	315.94	2.35	10.80	13982.82
140	ER67a	ExonRegion	0	25.56	21.42	1171.47	281.51	2.35	7.90	11825.79
141	E67a_E68a	KnownJunction	0	31.91	15.74	1597.41	222.12	6.20	1.29	15458.67
142	ER68a	ExonRegion	0	45.36	12.68	1836.31	285.98	3.52	2.52	15445.62
143	E68a_E69a	KnownJunction	0	42.93	17.10	1661.01	314.83	7.19	1.58	14392.90
144	ER69a	ExonRegion	0	51.11	16.43	1954.54	389.69	3.14	2.75	18636.11
145	E69a_E70a	KnownJunction	0	59.10	20.15	1670.01	364.38	2.35	0.00	16894.75
146	ER70a	ExonRegion	0	34.87	18.37	1411.58	400.34	2.73	4.79	16578.27
147	E70a_E71a	KnownJunction	0	42.63	20.02	1365.76	362.42	0.00	4.74	16376.93
148	E70a_E72a	NovelJunction	0	0.67	0.00	6.51	11.78	0.00	0.00	8.57
149	ER71a	ExonRegion	0	41.82	21.58	1341.93	361.31	3.67	6.25	14058.63
150	E71a_E72a	KnownJunction	0	37.09	23.22	1305.47	342.62	3.41	4.15	13228.39
151	ER72a	ExonRegion	0	57.08	21.35	1582.41	359.09	3.73	3.14	13787.24
152	E72a_E73a	KnownJunction	0	56.09	23.17	1868.01	402.19	6.13	3.46	15802.57
153	ER73a	ExonRegion	0	52.47	24.68	1788.88	454.20	5.69	5.42	16885.09
154	E73a_E74a	KnownJunction	0	61.74	34.42	1928.69	582.43	5.35	2.01	21566.57
155	ER74a	ExonRegion	0	54.75	36.76	1750.31	500.62	7.13	9.50	21664.79
156	E74a_E75a	KnownJunction	1	34.01	37.70	1195.66	490.73	6.04	5.57	20639.14
157	E74a_E76a	NovelJunction	0	0.00	1.05	27.49	53.64	0.00	3.22	57.78
158	ER75a	ExonRegion	1	42.55	29.25	1334.73	487.89	6.29	8.97	22743.21
159	E75a_E76a	KnownJunction	0	57.40	34.10	1491.81	480.35	3.14	12.33	22534.65
160	ER76a	ExonRegion	0	53.96	38.87	1729.25	606.78	7.82	10.21	25612.55
161	E76a_E77a	KnownJunction	0	47.82	33.05	1794.08	621.33	4.06	10.13	23999.24
162	ER77a	ExonRegion	0	29.30	18.26	994.05	319.22	3.29	7.06	12005.42
163	IG23	Intergenic	0	0.33	0.30	12.02	3.80	0.01	0.10	165.27
164	IG23_SR1	SilentIntergenicRegion	0	1.13	0.83	54.02	11.85	0.09	0.41	732.53
165	IG23_AR1	ActiveIntergenicRegion	0	1.02	1.55	25.26	8.32	0.00	0.00	407.80
166	IG23_SR2	SilentIntergenicRegion	0	0.20	0.20	6.96	3.15	0.00	0.06	93.32
167	IG23_AR2	ActiveIntergenicRegion	0	0.35	0.00	0.28	0.80	0.00	0.00	19.58
168	IG23_SR3	SilentIntergenicRegion	0	0.14	0.13	0.27	0.30	0.00	0.05	8.31