Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RNF213	Gene	0	195.98	89.44	75.19	27.37	111.34	24.55	133.92
2	336301	Transcript	0	213.94	94.65	82.76	27.45	129.09	25.46	156.58
3	IG11	Intergenic	0	32.39	18.79	11.82	6.75	12.28	5.55	18.65
4	IG11_AR1	ActiveIntergenicRegion	0	29.61	13.11	12.56	4.56	12.65	2.80	17.78
5	IG11_AR2	ActiveIntergenicRegion	0	25.12	14.70	12.93	4.25	12.02	3.18	16.26
6	IG11_AR5	ActiveIntergenicRegion	0	78.79	29.57	30.44	11.83	40.03	6.86	40.54
7	IG11_AR6	ActiveIntergenicRegion	0	78.08	48.56	28.84	12.87	30.53	9.95	45.32
8	IG11_AR7	ActiveIntergenicRegion	0	27.46	14.71	9.39	9.14	8.11	12.76	10.16
9	IG11_AR8	ActiveIntergenicRegion	0	54.89	27.98	28.36	14.90	37.62	10.91	32.59
10	IG11_SR8	SilentIntergenicRegion	0	21.99	12.91	9.23	5.36	7.95	5.30	10.25
11	IG11_AR9	ActiveIntergenicRegion	0	10.11	6.45	1.77	3.74	0.81	1.51	1.87
12	IG11_AR10	ActiveIntergenicRegion	0	12.29	3.64	1.35	3.74	1.21	2.45	1.35
13	IG11_AR11	ActiveIntergenicRegion	0	39.33	27.59	13.99	10.90	28.62	5.26	29.27
14	IG11_AR12	ActiveIntergenicRegion	0	146.78	63.86	34.39	18.97	53.19	12.33	66.18
15	IG11_AR13	ActiveIntergenicRegion	0	183.10	81.49	49.13	30.24	56.16	13.53	97.50
16	IG11_SR11	SilentIntergenicRegion	0	75.65	65.46	30.07	16.94	27.20	8.30	70.56
17	IG11_AR14	ActiveIntergenicRegion	0	20.35	13.81	11.06	8.50	21.48	2.45	30.11
18	ER1a	ExonRegion	0	60.69	62.47	25.85	17.28	30.85	13.19	69.77
19	E1a_E2a	KnownJunction	0	72.73	45.55	28.51	14.44	34.00	6.14	53.33
20	ER2a	ExonRegion	0	127.40	61.63	47.98	19.51	40.90	10.46	75.96
21	E2a_E3a	KnownJunction	0	135.00	70.80	58.19	14.44	39.74	9.00	82.13
22	ER3a	ExonRegion	1	187.76	109.07	76.29	22.15	53.09	12.51	107.92
23	E3a_E4a	KnownJunction	0	153.33	103.85	70.60	18.50	54.96	13.83	114.62
24	ER4a	ExonRegion	0	167.88	92.27	67.18	26.67	69.19	19.29	126.49
25	E4a_E5a	KnownJunction	1	213.28	63.94	55.73	24.84	79.21	3.00	103.46
26	ER5a	ExonRegion	1	215.85	72.86	71.87	26.08	74.84	8.83	102.99
27	E5a_E6a	KnownJunction	1	324.70	70.28	94.37	26.31	114.25	7.48	123.38
28	ER6a	ExonRegion	1	408.30	63.50	118.25	19.90	136.91	7.52	104.03
29	E6_Da	NovelBoundary	1	151.61	5.88	49.09	3.06	5.51	4.58	1.30
30	E6a_E7a	KnownJunction	1	370.73	45.24	115.85	17.45	108.56	7.80	119.35
31	ER7a	ExonRegion	1	350.97	70.30	100.38	19.11	103.74	8.98	102.87
32	E7a_E8a	KnownJunction	1	230.67	51.57	72.66	19.21	84.00	9.25	70.21
33	I7	Intron	0	20.23	12.99	11.24	10.50	8.25	8.14	4.03
34	I7_AR1	ActiveIntronRegion	0	20.82	13.37	11.57	10.81	8.49	8.37	4.15
35	E8_Aa	NovelBoundary	0	10.01	19.57	11.98	15.96	8.48	19.32	12.22
36	ER8a	ExonRegion	0	176.93	56.33	60.08	14.14	72.42	13.80	72.86
37	E8a_E9a	KnownJunction	0	146.97	41.43	28.91	5.69	54.22	13.51	65.70
38	I8	Intron	0	4.68	7.96	5.26	9.20	1.55	15.63	4.63
39	I8_AR1	ActiveIntronRegion	0	5.27	8.03	6.07	10.46	1.61	17.13	5.20
40	I8_AR2	ActiveIntronRegion	0	3.88	14.71	2.32	6.69	1.28	16.58	4.58
41	I8_AR3	ActiveIntronRegion	0	2.08	5.80	2.18	3.79	1.33	8.20	1.90
42	E9_Aa	NovelBoundary	0	8.36	7.88	8.62	9.89	1.15	5.01	5.96
43	ER9a	ExonRegion	0	120.59	65.85	44.01	19.97	63.18	21.95	81.68
44	E9_Da	NovelBoundary	0	11.80	8.35	11.65	13.25	8.99	13.61	5.93
45	E9a_E10a	KnownJunction	1	129.00	64.65	52.91	7.83	66.44	12.25	109.46
46	I9	Intron	0	14.46	9.43	7.23	9.89	5.11	12.94	3.48
47	I9_AR1	ActiveIntronRegion	0	14.87	9.71	7.41	10.75	6.02	13.48	4.06
48	I9_SR1	SilentIntronRegion	0	13.99	9.07	7.02	8.53	3.62	12.22	2.53
49	E10_Aa	NovelBoundary	0	10.53	14.42	7.08	12.16	5.97	9.57	4.11
50	ER10a	ExonRegion	0	127.09	85.11	52.43	18.12	68.85	22.93	96.78
51	E10a_E11a	KnownJunction	0	142.55	87.51	56.71	16.55	71.90	20.66	104.35
52	I10	Intron	0	8.92	14.47	4.99	7.55	1.21	19.28	4.30
53	I10_AR1	ActiveIntronRegion	0	3.65	8.59	0.43	1.38	1.15	8.07	2.43
54	I10_AR2	ActiveIntronRegion	1	10.02	15.00	3.50	4.12	0.99	15.35	5.69
55	I10_AR3	ActiveIntronRegion	0	10.51	16.40	6.63	9.96	1.27	23.50	4.75
56	E11_Aa	NovelBoundary	0	13.95	12.35	10.13	13.03	5.39	22.78	2.41
57	ER11a	ExonRegion	0	137.66	80.49	57.26	27.11	81.80	26.29	100.67
58	E11a_E12a	KnownJunction	0	117.85	70.64	40.94	20.32	94.91	13.16	92.49
59	I11_AR2	ActiveIntronRegion	0	6.47	7.66	5.26	9.07	1.41	3.04	1.82
60	E12_Aa	NovelBoundary	0	11.87	6.20	3.58	7.23	1.18	12.57	4.11
61	ER12a	ExonRegion	0	215.95	100.12	69.29	25.41	110.24	27.15	132.21
62	E12_Da	NovelBoundary	0	6.46	11.93	2.90	10.97	4.24	10.45	0.72
63	E12a_E13a	KnownJunction	0	228.28	108.90	78.98	28.85	124.46	32.88	162.02
64	E13_Aa	NovelBoundary	0	10.28	8.93	6.28	10.84	4.52	12.62	5.06
65	ER13a	ExonRegion	0	262.46	103.37	99.51	27.32	126.74	33.35	169.01
66	E13_Da	NovelBoundary	0	17.52	14.74	11.01	18.75	8.55	27.36	3.25
67	E13a_E14a	KnownJunction	0	166.32	69.17	66.97	14.41	120.31	23.21	149.92
68	I13	Intron	0	30.70	16.71	13.71	9.30	5.71	12.41	4.21
69	I13_AR1	ActiveIntronRegion	0	34.49	9.35	12.10	8.17	8.41	10.69	4.96
70	I13_SR1	SilentIntronRegion	1	52.42	23.19	18.90	18.43	8.54	22.81	4.93
71	I13_AR2	ActiveIntronRegion	0	28.56	19.43	14.84	9.03	5.15	11.70	4.44
72	I13_SR2	SilentIntronRegion	0	25.29	12.26	9.47	4.84	4.21	9.50	2.55
73	E14_Aa	NovelBoundary	1	21.48	20.23	19.87	8.64	4.50	15.14	3.14
74	ER14a	ExonRegion	0	167.24	78.15	75.22	24.40	104.74	24.18	135.10
75	E14_Da	NovelBoundary	0	6.86	7.80	6.19	7.80	0.00	11.34	3.68
76	E14a_E15a	KnownJunction	0	152.90	67.41	67.53	19.18	83.64	19.11	133.14
77	I14_AR1	ActiveIntronRegion	0	11.45	6.69	9.66	2.91	2.23	10.00	5.16
78	ER15a	ExonRegion	0	170.18	93.41	75.13	27.90	78.65	27.20	135.84
79	E15a_E16a	KnownJunction	0	146.24	73.80	63.79	25.87	93.04	14.31	122.32
80	I15	Intron	0	8.12	9.70	5.59	4.82	0.70	7.91	4.17
81	I15_AR1	ActiveIntronRegion	0	6.92	7.09	2.82	2.49	1.62	11.03	1.35
82	I15_AR2	ActiveIntronRegion	0	8.73	9.58	6.28	4.26	1.33	11.92	2.47
83	ER16a	ExonRegion	0	135.39	86.29	60.75	28.47	80.02	25.25	130.31
84	E16a_E17a	KnownJunction	0	126.34	72.75	61.68	26.93	101.13	13.53	122.92
85	ER17a	ExonRegion	0	117.65	79.49	58.01	21.88	76.66	21.93	119.18
86	E17_Da	NovelBoundary	0	37.00	15.66	17.72	9.59	2.97	1.34	2.09
87	E17a_E18a	KnownJunction	1	124.94	91.87	45.21	10.19	85.25	17.23	107.20
88	ER18a	ExonRegion	0	134.51	100.79	55.97	15.98	88.43	27.19	141.51
89	E18a_E19a	KnownJunction	0	145.72	101.70	53.77	19.88	109.80	34.30	139.97
90	ER19a	ExonRegion	0	172.68	126.61	68.67	30.97	113.04	33.48	165.37
91	E19a_E20a	KnownJunction	0	186.84	134.67	70.60	36.27	115.82	24.52	176.25
92	ER20a	ExonRegion	0	231.67	116.81	91.90	41.06	149.76	26.39	176.97
93	E20a_E21a	KnownJunction	0	270.78	126.55	103.45	35.98	164.71	23.64	148.59
94	ER21a	ExonRegion	0	390.45	120.78	148.45	30.20	186.28	26.70	206.70
95	E21a_E22a	KnownJunction	0	468.92	130.83	175.35	27.96	186.61	24.07	201.39
96	ER22a	ExonRegion	0	376.58	125.27	147.06	30.23	153.98	30.77	195.25
97	E22a_E23a	KnownJunction	0	395.10	109.29	137.60	15.66	148.35	24.49	202.20
98	ER23a	ExonRegion	0	208.34	92.60	85.04	23.40	88.95	23.23	122.60
99	E23a_E24a	KnownJunction	0	108.57	101.88	39.98	21.37	48.90	19.14	81.03
100	ER24a	ExonRegion	0	133.73	99.78	51.26	23.54	91.72	23.91	108.95
101	E24a_E25a	KnownJunction	0	132.77	106.85	58.06	35.16	105.21	20.31	138.37
102	ER25a	ExonRegion	0	181.65	121.83	77.38	42.23	106.61	29.31	155.56
103	E25a_E26a	KnownJunction	0	255.66	113.68	108.35	44.46	166.56	24.76	150.52
104	E26_Aa	NovelBoundary	0	17.41	10.80	8.25	8.56	3.16	3.75	0.62
105	ER26a	ExonRegion	0	235.14	132.67	113.10	46.36	157.83	27.62	212.93
106	E26a_E27a	KnownJunction	0	216.55	103.51	103.62	40.47	150.65	28.60	194.94
107	E27_Aa	NovelBoundary	1	13.30	5.33	8.65	12.33	1.18	1.15	4.57
108	ER27a	ExonRegion	0	200.27	103.05	93.36	33.90	135.98	33.05	188.90
109	E27a_E28a	KnownJunction	0	170.84	94.26	70.33	13.09	129.23	24.98	191.31
110	ER28a	ExonRegion	0	153.18	98.15	60.71	19.72	119.31	24.42	171.14
111	E28_Da	NovelBoundary	0	10.82	7.33	9.86	10.29	1.82	6.49	2.34
112	E28a_E29a	KnownJunction	0	106.43	61.84	54.55	24.92	106.85	16.00	127.81
113	ER29a	ExonRegion	0	111.75	68.66	49.55	23.37	89.71	11.24	153.71
114	E29a_E30a	KnownJunction	0	93.06	58.69	35.67	16.50	65.91	7.37	121.26
115	I29_AR2	ActiveIntronRegion	0	27.27	10.96	19.19	4.50	6.86	6.21	6.58
116	E30_Aa	NovelBoundary	0	18.41	24.80	10.23	9.18	6.85	8.23	6.94
117	ER30a	ExonRegion	1	123.94	86.55	46.94	28.84	92.91	18.33	175.07
118	E30a_E31a	KnownJunction	0	134.30	83.62	43.56	19.94	75.87	23.40	146.68
119	I30	Intron	0	38.67	17.90	20.73	7.47	9.56	5.99	4.36
120	I30_AR1	ActiveIntronRegion	0	33.91	20.79	24.34	5.74	9.48	8.25	5.47
121	I30_SR1	SilentIntronRegion	0	36.46	12.99	24.75	5.88	12.56	4.24	5.58
122	I30_AR4	ActiveIntronRegion	1	41.95	18.31	18.93	8.71	9.12	5.68	3.72
123	E31_Aa	NovelBoundary	0	11.77	12.79	13.97	9.16	5.60	4.50	4.57
124	ER31a	ExonRegion	0	138.30	85.81	63.93	24.17	92.12	25.46	146.72
125	E31a_E32a	KnownJunction	0	140.51	87.54	64.45	28.85	81.08	47.52	142.45
126	ER32a	ExonRegion	0	180.70	85.25	80.66	27.87	118.10	27.47	169.44
127	E32_Da	NovelBoundary	0	38.50	30.69	6.70	8.80	19.02	4.93	8.20
128	E32a_E33a	KnownJunction	0	163.39	50.31	86.65	25.01	75.71	16.83	148.75
129	I32	Intron	1	58.10	21.99	27.98	7.09	15.92	5.82	8.79
130	I32_AR1	ActiveIntronRegion	0	58.20	22.03	28.03	7.10	15.95	5.83	8.80
131	E33_Aa	NovelBoundary	1	62.42	14.50	40.97	7.12	19.16	9.65	5.75
132	ER33a	ExonRegion	0	235.30	89.46	104.28	37.00	116.14	26.57	202.49
133	E33a_E34a	KnownJunction	0	284.13	105.80	103.48	42.99	188.13	23.40	225.13
134	ER34a	ExonRegion	0	384.70	103.58	143.62	46.49	214.49	29.94	217.46
135	E34_Da	NovelBoundary	1	48.48	26.72	20.62	8.75	8.05	2.92	4.99
136	E34a_E35a	KnownJunction	0	382.52	74.24	141.25	39.31	265.15	44.84	251.70
137	I34	Intron	0	34.28	16.69	19.43	8.27	6.08	5.78	5.89
138	I34_AR1	ActiveIntronRegion	0	34.34	16.72	19.46	8.29	6.09	5.79	5.90
139	E35_Aa	NovelBoundary	1	30.93	15.58	15.36	9.43	7.08	0.00	5.47
140	ER35a	ExonRegion	0	400.62	118.04	138.74	28.91	258.12	36.90	256.39
141	E35_Da	NovelBoundary	0	2.99	12.14	4.79	9.51	2.14	1.34	2.89
142	E35a_E36a	KnownJunction	0	312.64	125.63	103.31	25.25	190.95	42.99	244.87
143	I35	Intron	0	19.29	7.55	10.05	8.29	1.46	3.56	3.35
144	I35_AR1	ActiveIntronRegion	0	20.63	8.37	10.92	8.97	1.52	3.74	3.73
145	E36_Aa	NovelBoundary	0	19.33	6.28	16.17	10.02	0.92	7.77	6.09
146	ER36a	ExonRegion	0	310.68	138.00	116.92	30.88	228.97	39.17	279.04
147	E36_Da	NovelBoundary	0	14.02	12.53	8.71	3.87	1.11	8.58	1.35
148	E36a_E37a	KnownJunction	0	298.28	138.16	122.56	26.98	304.55	41.43	243.62
149	E37_Aa	NovelBoundary	1	4.36	11.14	5.22	8.05	3.20	0.00	5.73
150	ER37a	ExonRegion	0	212.48	125.19	91.98	31.75	193.42	32.84	216.22
151	E37a_E38a	KnownJunction	0	203.65	113.20	79.44	31.21	228.68	24.47	186.80
152	E38_Aa	NovelBoundary	0	9.91	5.36	2.18	8.05	1.18	6.08	2.46
153	ER38a	ExonRegion	0	149.31	109.66	59.40	34.61	150.44	31.30	181.51
154	E38_Da	NovelBoundary	0	7.64	7.80	6.37	9.02	1.98	4.77	0.00
155	E38a_E39a	KnownJunction	0	185.26	101.67	62.04	37.03	147.91	27.01	191.01
156	I38	Intron	0	7.96	6.63	7.49	8.35	1.51	3.98	2.76
157	I38_AR1	ActiveIntronRegion	0	9.28	7.42	8.01	10.03	1.76	4.69	3.08
158	ER39a	ExonRegion	0	207.62	124.73	99.60	40.88	220.22	47.01	255.24
159	E39_Da	NovelBoundary	1	17.39	7.33	13.55	17.77	9.89	6.57	9.00
160	E39a_E40a	KnownJunction	0	219.36	113.36	109.06	37.47	212.20	49.50	233.63
161	E40_Aa	NovelBoundary	1	3.81	0.00	3.79	8.07	4.47	3.46	3.32
162	ER40a	ExonRegion	0	236.97	135.48	115.66	48.15	240.63	55.72	238.54
163	E40_Da	NovelBoundary	0	7.04	9.83	4.68	4.06	0.00	9.00	2.31
164	E40a_E41a	KnownJunction	0	372.02	142.76	155.69	59.98	433.09	56.47	363.70
165	I40	Intron	0	7.40	13.03	9.23	10.29	1.60	5.87	2.78
166	I40_SR1	SilentIntronRegion	0	7.45	13.11	9.30	10.36	1.61	5.90	2.79
167	E41_Aa	NovelBoundary	0	11.08	9.54	12.98	10.59	2.35	7.34	2.95
168	ER41a	ExonRegion	0	384.95	152.68	179.97	49.91	257.94	49.90	310.49
169	E41_Da	NovelBoundary	0	10.87	11.74	7.54	11.32	4.40	10.43	1.52
170	E41a_E42a	KnownJunction	0	236.10	149.14	101.22	46.03	160.95	57.03	184.29
171	E42_Aa	NovelBoundary	0	8.71	5.36	5.95	5.50	5.37	8.71	3.87
172	ER42a	ExonRegion	0	410.76	131.65	151.94	39.75	271.74	52.77	247.37
173	E42a_E43a	KnownJunction	1	456.75	94.34	126.13	29.69	251.18	58.56	179.80
174	ER43a	ExonRegion	0	206.25	68.50	69.15	25.04	138.92	26.51	97.93
175	IG12_SR1	SilentIntergenicRegion	0	14.14	5.33	11.06	3.58	2.36	2.84	1.60