Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CYTH1	Gene	0	138.42	199.29	95.36	143.88	32.00	111.09	84.99
2	392457	Transcript	0	0.00	0.00	0.00	0.00	0.61	0.00	0.34
3	392453	Transcript	0	20.17	35.84	18.37	24.00	4.05	17.62	12.99
4	262763	Transcript	0	32.43	42.30	27.81	31.64	32.39	33.53	52.73
5	361101	Transcript	1	72.80	126.02	64.99	95.22	0.09	64.97	27.91
6	IG40	Intergenic	0	22.83	30.79	20.90	34.93	15.36	51.99	20.89
7	IG40_AR11	ActiveIntergenicRegion	0	57.09	116.90	74.61	155.06	76.10	215.15	76.09
8	IG40_SR7	SilentIntergenicRegion	0	8.53	7.22	6.37	7.64	2.69	8.20	6.58
9	IG40_AR10	ActiveIntergenicRegion	0	19.06	23.37	14.55	20.09	6.76	26.89	16.98
10	IG40_SR6	SilentIntergenicRegion	0	19.07	36.75	15.50	27.27	7.25	40.86	19.47
11	IG40_AR9	ActiveIntergenicRegion	0	34.00	36.07	27.63	32.72	13.90	70.02	30.37
12	IG40_SR5	SilentIntergenicRegion	0	48.04	22.18	29.34	27.07	8.23	54.13	10.88
13	IG40_AR8	ActiveIntergenicRegion	0	62.85	43.55	39.45	48.55	18.97	87.52	22.77
14	IG40_SR4	SilentIntergenicRegion	0	27.27	17.57	10.93	13.43	6.12	11.61	14.00
15	IG40_AR7	ActiveIntergenicRegion	0	18.66	14.83	16.80	13.41	7.94	18.55	20.65
16	IG40_AR6	ActiveIntergenicRegion	0	12.73	8.10	9.72	8.64	4.00	11.65	9.58
17	IG40_SR2	SilentIntergenicRegion	0	9.17	12.28	5.21	9.42	4.73	20.85	12.76
18	IG40_AR2	ActiveIntergenicRegion	0	13.75	33.37	17.75	39.46	11.00	93.73	32.58
19	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	1.21	0.00	0.67
20	ER1b	ExonRegion	0	2.31	1.21	0.68	1.25	2.43	1.23	0.67
21	ER1c	ExonRegion	1	11.90	16.31	7.66	37.75	5.92	34.89	17.38
22	E1a_E2a	KnownJunction	1	10.28	13.40	8.62	32.62	5.46	56.33	27.19
23	I1_AR20	ActiveIntronRegion	1	29.37	4.27	15.75	0.00	0.00	0.00	1.04
24	ER2a	ExonRegion	0	53.48	168.22	35.72	94.20	8.23	73.31	48.44
25	E2a_E3a	KnownJunction	0	103.66	293.90	72.71	187.04	10.42	116.71	81.92
26	ER3a	ExonRegion	0	196.28	265.70	158.65	224.51	24.59	137.50	116.91
27	E3a_E4a	KnownJunction	0	242.10	226.14	201.11	209.71	42.37	119.88	131.94
28	E3a_E5a	NovelJunction	0	13.90	28.69	15.65	48.28	0.00	44.19	0.00
29	E3a_E14b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER4a	ExonRegion	0	167.39	229.30	144.05	149.30	51.66	121.36	118.60
31	E4a_E5a	KnownJunction	0	100.27	237.94	108.83	118.98	33.31	124.27	100.05
32	ER5a	ExonRegion	0	134.67	297.41	131.44	204.63	38.27	155.80	123.47
33	E5a_E6a	KnownJunction	0	149.73	285.28	151.69	212.20	65.06	136.01	125.56
34	ER6a	ExonRegion	0	168.82	281.35	162.36	213.88	57.03	167.24	137.79
35	E6a_E7a	KnownJunction	0	130.90	307.32	120.45	202.21	31.88	168.28	127.91
36	ER7a	ExonRegion	0	165.91	324.09	143.37	229.23	34.11	154.17	144.54
37	E7a_E8a	KnownJunction	0	217.47	346.94	186.89	257.80	42.92	193.25	165.24
38	ER8a	ExonRegion	0	161.22	335.91	139.73	239.06	47.07	142.96	120.26
39	E8a_E9a	KnownJunction	0	188.88	280.29	163.72	190.50	29.37	125.07	113.30
40	E9_Aa	NovelBoundary	1	38.62	8.25	9.25	4.74	0.00	3.08	2.06
41	ER9a	ExonRegion	0	201.24	273.43	160.67	191.72	43.03	137.26	139.61
42	E9a_E10a	KnownJunction	0	63.94	90.16	60.96	55.27	0.00	50.20	29.92
43	E9a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E9a_E11b	KnownJunction	0	32.43	42.30	27.81	31.64	32.39	33.53	52.73
45	I9	Intron	1	36.98	16.43	15.95	4.01	1.50	3.40	3.07
46	I9_SR1	SilentIntronRegion	1	37.09	16.47	16.00	4.02	1.51	3.41	3.08
47	E10a_E11b	KnownJunction	1	34.85	85.41	30.82	77.02	0.00	42.13	7.27
48	ER10a	ExonRegion	1	119.62	202.48	103.19	153.38	0.27	102.58	46.55
49	I10_AR1	ActiveIntronRegion	1	37.58	13.25	12.36	2.31	1.32	2.01	3.87
50	I10_SR3	SilentIntronRegion	0	29.27	15.19	14.42	5.54	1.94	3.72	2.91
51	ER11a	ExonRegion	0	40.34	71.68	36.75	48.01	8.10	35.25	25.97
52	ER11b	ExonRegion	0	109.02	264.22	113.41	173.51	35.53	102.97	86.53
53	E11a_E12a	KnownJunction	0	108.75	205.07	109.06	141.33	29.69	83.83	82.84
54	I11_SR3	SilentIntronRegion	1	33.95	10.99	9.20	2.11	1.71	2.42	2.62
55	I11_AR3	ActiveIntronRegion	1	44.91	9.99	10.16	0.83	0.63	1.36	4.72
56	ER12a	ExonRegion	0	193.17	277.66	165.63	183.25	38.93	151.46	151.51
57	E12a_E13a	KnownJunction	0	265.57	344.42	195.97	248.91	80.06	188.19	193.32
58	ER13a	ExonRegion	0	127.99	213.48	95.37	152.20	36.58	92.73	102.83
59	E13_Da	NovelBoundary	1	65.51	98.47	50.01	43.81	5.44	8.66	6.74
60	E13a_E14a	KnownJunction	0	68.65	126.21	62.81	149.27	37.60	97.39	107.83
61	I13	Intron	1	111.43	84.26	49.64	35.86	9.19	16.43	9.98
62	I13_SR1	SilentIntronRegion	1	68.62	86.58	44.14	29.02	6.80	6.82	7.63
63	I13_AR1	ActiveIntronRegion	1	116.94	84.02	50.37	36.75	9.50	17.66	10.29
64	E14_Aa	NovelBoundary	1	264.80	139.55	73.48	58.46	16.37	27.17	15.78
65	ER14a	ExonRegion	0	133.53	172.74	67.87	119.81	33.02	76.51	82.55
66	E14_Ab	KnownBoundary	0	123.59	142.55	87.98	100.70	39.88	68.34	76.06
67	ER14b	ExonRegion	0	120.91	142.15	87.37	101.94	32.49	78.64	78.37
68	E14_Da	KnownBoundary	0	87.52	87.27	54.94	56.02	32.41	63.17	47.74
69	ER14c	ExonRegion	0	141.80	177.37	82.13	131.19	29.14	114.21	68.30