Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PLEKHM1P	Gene	0	53.72	42.71	30.49	26.85	3.03	37.96	66.05
2	290422	Transcript	0	45.80	36.68	25.03	22.52	2.75	32.21	59.56
3	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.33
6	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER3a	ExonRegion	0	0.00	0.00	0.10	0.76	0.00	0.38	0.09
8	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER4a	ExonRegion	0	0.00	0.00	0.19	0.00	0.00	0.18	0.06
10	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER5a	ExonRegion	0	37.63	35.08	36.40	25.31	2.00	38.61	62.24
12	E5a_E6a	KnownJunction	0	84.85	71.90	57.71	40.23	2.03	58.96	93.99
13	Ix	Intron	0	6.36	10.75	2.65	2.48	0.58	0.66	6.46
14	Ix_SR1	SilentIntronRegion	0	8.79	14.50	3.16	3.56	0.56	0.64	8.76
15	I5	Intron	1	8.20	10.01	3.18	1.81	1.27	1.83	9.38
16	I5_SR1	SilentIntronRegion	1	17.63	19.86	5.56	3.04	1.72	2.90	19.38
17	I5_AR3	ActiveIntronRegion	1	3.71	15.94	4.09	3.77	2.31	5.37	7.54
18	ER6a	ExonRegion	0	150.75	86.66	91.29	55.41	7.85	96.20	132.43
19	E6a_E7a	KnownJunction	0	92.61	79.08	50.41	37.76	7.17	51.56	108.78
20	ER7a	ExonRegion	0	59.86	57.37	42.38	38.32	3.73	44.02	90.99
21	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER8a	ExonRegion	0	36.24	47.18	23.55	36.37	1.64	54.04	73.09
23	E8a_E9a	KnownJunction	0	42.63	38.80	20.66	31.45	3.00	46.82	82.10
24	ER9a	ExonRegion	0	89.53	70.91	47.21	54.51	5.53	60.23	122.42
25	E9a_E10a	KnownJunction	0	133.87	80.76	72.76	63.83	9.89	53.28	196.50
26	ER10a	ExonRegion	0	121.51	93.26	58.72	60.77	10.34	71.03	182.52
27	E10_Da	NovelBoundary	0	13.37	13.82	15.95	8.86	0.00	16.11	16.55
28	E10a_E11a	KnownJunction	0	105.75	89.93	58.10	53.97	4.68	90.29	156.97
29	I10_AR1	ActiveIntronRegion	0	12.40	11.22	4.83	5.12	0.31	5.52	7.49
30	E11_Aa	NovelBoundary	1	44.71	5.49	27.72	1.46	0.00	2.55	0.00
31	ER11a	ExonRegion	0	119.36	99.93	74.62	65.24	9.21	90.55	205.38
32	E11a_E12a	KnownJunction	0	56.96	87.83	38.94	32.48	5.44	58.56	108.47
33	ER12a	ExonRegion	0	63.20	67.88	43.30	43.93	6.07	54.16	121.06
34	E12_Da	NovelBoundary	1	66.54	155.71	44.15	137.60	12.01	216.35	214.81
35	E12a_E13a	KnownJunction	0	5.61	9.14	8.77	6.64	0.00	5.57	2.98
36	I12	Intron	1	29.00	17.17	10.51	8.49	1.91	14.70	54.85
37	I12_AR1	ActiveIntronRegion	1	20.71	16.74	10.49	11.85	2.00	12.58	30.93
38	I12_SR1	SilentIntronRegion	1	31.75	17.06	9.89	8.41	1.62	15.54	58.00
39	I12_AR2	ActiveIntronRegion	1	34.89	20.50	14.37	7.33	3.18	17.61	80.00
40	E13_Aa	NovelBoundary	1	20.29	20.81	8.91	6.26	1.13	13.78	53.40
41	ER13a	ExonRegion	1	39.28	25.72	12.93	19.10	3.29	26.72	66.70
42	E13_Da	NovelBoundary	1	47.20	26.14	14.64	15.96	7.28	23.85	95.33
43	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	I13	Intron	1	27.19	21.52	10.24	11.37	2.19	20.17	51.62
45	I13_SR1	SilentIntronRegion	1	34.43	24.99	13.44	14.68	3.41	23.36	63.52
46	I13_AR1	ActiveIntronRegion	1	19.17	17.72	6.69	7.69	0.82	16.67	38.47
47	E14_Aa	NovelBoundary	1	21.55	31.34	12.43	19.34	2.05	25.35	42.55
48	ER14a	ExonRegion	1	14.84	12.10	6.60	5.40	1.10	18.69	25.24
49	E14a_E15a	KnownJunction	1	20.26	18.44	11.93	8.10	2.74	32.86	41.72
50	ER15a	ExonRegion	1	46.37	27.49	14.32	13.10	1.31	24.48	26.75
51	E15a_E16a	KnownJunction	1	22.28	9.27	8.42	11.57	1.96	8.92	10.48
52	E16_Aa	NovelBoundary	1	12.27	13.19	3.25	8.86	0.00	10.77	21.67
53	ER16a	ExonRegion	0	35.88	37.36	12.89	15.15	2.12	22.95	26.27
54	E16_Da	NovelBoundary	0	58.08	59.85	30.22	35.79	2.07	36.93	41.23
55	E16a_E17a	KnownJunction	0	2.77	0.00	0.00	1.30	0.00	1.18	0.79
56	I16	Intron	0	14.82	13.41	6.93	6.31	0.63	12.12	8.68
57	I16_AR1	ActiveIntronRegion	0	14.92	13.52	6.98	6.34	0.63	12.22	8.74
58	E17_Aa	NovelBoundary	0	16.14	19.13	10.32	8.07	0.00	10.10	11.45
59	ER17a	ExonRegion	0	51.98	38.02	20.87	17.46	1.72	32.38	41.12
60	E17_Da	NovelBoundary	1	35.98	29.35	6.48	6.75	0.00	8.01	21.15
61	E17a_E18a	KnownJunction	0	102.06	61.69	38.23	34.19	0.95	53.73	67.95
62	E18_Aa	NovelBoundary	1	137.02	41.56	28.81	5.39	3.09	10.72	26.21
63	ER18a	ExonRegion	1	66.75	38.06	24.63	15.82	2.33	31.07	37.02
64	IG23_AR22	ActiveIntergenicRegion	0	18.63	24.65	5.74	8.52	0.81	14.98	16.49
65	IG23_SR15	SilentIntergenicRegion	0	8.49	6.30	1.89	2.24	0.21	3.29	9.77
66	IG23_AR20	ActiveIntergenicRegion	0	9.83	13.12	0.48	4.50	5.58	2.91	9.98
67	IG23_SR14	SilentIntergenicRegion	0	9.54	6.31	1.22	2.49	0.41	1.72	8.86
68	IG23_AR19	ActiveIntergenicRegion	0	10.52	6.73	2.19	0.00	0.00	1.23	5.76
69	IG23_AR17	ActiveIntergenicRegion	0	11.53	5.16	1.91	0.99	0.19	1.85	5.32
70	IG23_SR13	SilentIntergenicRegion	0	25.31	10.19	5.67	0.65	1.41	1.23	11.28
71	IG23_SR12	SilentIntergenicRegion	0	31.47	6.13	5.43	2.82	1.15	3.59	15.64
72	IG23_AR15	ActiveIntergenicRegion	0	9.97	5.45	1.86	3.36	0.36	3.31	10.95
73	IG23_AR14	ActiveIntergenicRegion	0	15.83	8.82	2.93	3.25	1.34	7.22	18.13
74	IG23_AR13	ActiveIntergenicRegion	0	13.05	3.85	0.37	4.93	0.46	7.10	19.20
75	IG23_AR12	ActiveIntergenicRegion	0	8.78	3.53	0.00	3.20	0.79	9.86	10.37
76	IG23_AR11	ActiveIntergenicRegion	0	20.75	8.03	3.48	3.46	1.50	8.09	23.07
77	IG23_AR9	ActiveIntergenicRegion	0	53.56	29.86	9.50	12.56	6.93	30.42	80.03
78	IG23_AR7	ActiveIntergenicRegion	0	7.41	1.31	1.63	0.87	1.94	3.91	10.95
79	IG23_AR6	ActiveIntergenicRegion	0	28.06	9.66	7.18	2.96	4.33	11.50	48.60
80	IG23_AR5	ActiveIntergenicRegion	0	22.46	12.41	4.93	5.48	3.27	14.76	29.65