Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TLK2	Gene	0	161.01	149.51	213.12	162.88	181.21	158.11	89.29
2	346027	Transcript	0	8.27	19.47	19.22	17.20	21.95	19.72	12.15
3	343388	Transcript	1	46.77	75.69	116.08	75.94	127.87	101.71	30.07
4	326270	Transcript	0	4.30	0.45	1.26	1.63	4.73	4.18	1.60
5	IG42_AR7	ActiveIntergenicRegion	0	13.50	8.14	16.50	8.55	27.23	3.84	8.46
6	ER1a	ExonRegion	0	1.89	8.53	3.51	6.05	2.66	8.31	0.42
7	E1_Ab	KnownBoundary	0	0.72	9.30	0.00	11.70	0.00	14.50	1.45
8	ER1b	ExonRegion	0	8.31	28.85	6.45	22.68	5.41	25.82	1.51
9	E1a_E2a	KnownJunction	0	17.66	48.94	19.57	66.40	18.12	81.95	9.26
10	ER2a	ExonRegion	0	129.92	170.12	173.35	170.73	88.09	175.79	49.85
11	E2a_E3a	KnownJunction	0	173.81	214.06	226.09	227.54	71.28	257.87	63.29
12	E2a_E5a	NovelJunction	0	1.65	5.65	2.00	2.44	0.00	10.48	0.00
13	E2a_E7a	NovelJunction	1	1.75	17.58	1.39	5.69	0.00	8.25	0.00
14	ER3a	ExonRegion	0	159.35	232.66	205.88	247.18	149.07	263.18	72.09
15	E3a_E4a	KnownJunction	0	176.31	213.01	184.40	229.49	170.94	231.23	80.57
16	E3a_E5a	NovelJunction	1	28.74	19.07	24.19	17.39	0.99	16.56	1.38
17	E3a_E7a	NovelJunction	0	2.94	34.13	9.92	27.23	0.00	29.53	0.00
18	ER4a	ExonRegion	0	381.92	303.85	384.69	310.32	217.76	271.58	135.75
19	E4a_E5a	KnownJunction	0	416.76	331.02	417.34	303.50	273.08	262.45	138.71
20	E4a_E7a	NovelJunction	1	12.47	24.09	32.45	40.18	9.50	66.54	4.46
21	ER5a	ExonRegion	0	440.63	378.62	452.25	340.51	266.96	305.22	136.05
22	E5a_E6a	KnownJunction	1	334.45	244.90	265.20	182.43	91.29	121.94	86.45
23	E5a_E7a	KnownJunction	0	46.77	75.69	116.08	75.94	127.87	101.71	30.07
24	ER6a	ExonRegion	0	361.59	282.83	297.67	264.55	137.24	149.00	118.41
25	E6a_E7a	KnownJunction	0	237.88	211.25	215.41	210.74	147.10	103.37	96.69
26	ER7a	ExonRegion	0	291.49	393.66	363.70	355.61	214.35	308.92	150.72
27	E7a_E8a	KnownJunction	0	205.62	339.82	308.01	270.59	159.02	252.99	130.67
28	E7a_E9a	NovelJunction	0	1.65	10.30	5.06	15.93	0.00	4.56	0.85
29	E7a_E10a	NovelJunction	1	11.25	70.09	28.15	63.61	8.62	38.70	4.37
30	ER8a	ExonRegion	0	301.68	379.23	442.50	341.37	228.67	305.99	181.77
31	E8a_E9a	KnownJunction	0	229.32	256.28	352.02	249.29	193.04	222.71	131.66
32	E8a_E10a	NovelJunction	1	9.43	47.24	23.71	20.43	0.00	33.37	4.03
33	ER9a	ExonRegion	0	274.27	290.15	449.09	303.52	237.92	233.53	161.15
34	E9a_E10a	KnownJunction	0	328.24	312.63	508.38	329.67	215.87	269.79	186.32
35	ER10a	ExonRegion	0	228.36	302.94	391.73	297.56	191.02	259.83	141.06
36	E10a_E11a	KnownJunction	0	125.59	179.49	236.72	164.44	131.06	187.54	85.97
37	ER11a	ExonRegion	0	134.82	170.47	243.86	172.65	217.31	177.90	96.70
38	E11a_E12a	KnownJunction	0	154.37	157.63	223.21	161.87	199.25	177.36	76.66
39	ER12a	ExonRegion	0	199.50	176.81	253.59	210.67	246.10	208.95	94.04
40	E12a_E13a	KnownJunction	0	4.47	0.00	2.46	0.00	5.16	6.24	3.40
41	E12a_E14a	KnownJunction	0	285.10	171.76	259.20	226.56	331.89	199.79	84.48
42	ER13a	ExonRegion	0	4.26	0.22	1.31	1.59	6.09	2.51	1.39
43	E13a_E14a	KnownJunction	0	4.17	1.13	0.00	3.31	2.95	3.78	0.00
44	ER14a	ExonRegion	0	301.04	161.45	281.74	212.06	337.13	191.27	93.93
45	E14a_E15a	KnownJunction	0	299.68	144.57	285.47	208.66	309.97	212.33	99.57
46	ER15a	ExonRegion	0	350.90	155.37	361.11	214.11	358.17	199.80	110.86
47	E15a_E16a	KnownJunction	0	384.77	161.23	403.03	207.11	386.78	181.51	122.30
48	ER16a	ExonRegion	0	295.00	140.73	325.63	166.65	364.43	171.46	108.77
49	E16a_E17a	KnownJunction	0	206.62	104.93	237.84	123.18	320.57	119.02	91.26
50	ER17a	ExonRegion	0	196.59	123.24	279.26	128.88	277.01	134.39	96.22
51	E17a_E18a	KnownJunction	0	212.21	116.22	298.80	131.42	292.79	118.45	110.81
52	ER18a	ExonRegion	0	206.12	123.79	312.97	165.58	277.79	143.66	115.88
53	E18a_E19a	KnownJunction	0	170.80	127.81	304.65	158.48	193.62	176.45	118.15
54	ER19a	ExonRegion	0	234.22	147.67	335.50	173.47	295.59	196.38	121.74
55	E19a_E20a	KnownJunction	0	165.28	138.53	258.49	141.06	238.25	163.32	106.48
56	E19a_E21a	NovelJunction	0	4.77	9.93	0.00	9.94	1.18	2.12	0.00
57	ER20a	ExonRegion	0	146.53	137.36	224.88	138.16	224.45	161.14	111.27
58	E20a_E21a	KnownJunction	0	115.91	136.90	201.63	136.30	246.92	152.41	117.23
59	ER21a	ExonRegion	0	115.83	132.56	197.12	139.83	239.27	146.13	120.35
60	E21a_E22a	KnownJunction	0	120.52	125.39	179.15	136.19	222.58	185.96	137.44
61	ER22a	ExonRegion	0	100.81	138.58	158.99	145.81	227.46	176.02	129.97
62	E22a_E23a	KnownJunction	0	110.90	123.84	147.68	166.37	228.50	161.17	108.86
63	ER23a	ExonRegion	0	96.17	85.36	132.78	116.93	143.76	125.42	69.73
64	E23_Da	KnownBoundary	1	25.32	36.33	59.79	28.39	62.01	50.20	27.72
65	ER23b	ExonRegion	0	14.65	30.41	34.92	28.36	41.23	31.12	23.88
66	IG43_AR1	ActiveIntergenicRegion	0	15.13	14.25	18.75	18.43	24.42	17.91	10.03
67	IG43_AR5	ActiveIntergenicRegion	0	2.48	3.30	2.51	4.55	0.87	8.38	0.97
68	IG43_SR4	SilentIntergenicRegion	0	2.89	5.95	3.78	10.36	1.65	11.77	1.77
69	IG43_AR7	ActiveIntergenicRegion	0	0.41	0.65	3.61	3.47	2.20	8.90	4.02