Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	QRICH2	Gene	0	18.43	10.95	10.98	14.21	12.15	26.38	21.69
2	262765	Transcript	0	13.14	10.16	8.97	15.31	8.83	40.92	19.08
3	301613	Transcript	0	0.00	0.00	0.00	0.25	0.00	0.00	0.00
4	ER1a	ExonRegion	0	3.04	4.13	2.04	2.63	2.40	5.50	7.13
5	E1a_E2a	KnownJunction	0	2.74	3.10	2.76	0.00	1.18	1.26	2.58
6	I1	Intron	1	4.73	1.77	1.48	2.65	2.85	2.98	7.86
7	I1_AR1	ActiveIntronRegion	1	4.24	0.86	2.81	1.86	2.53	4.17	8.03
8	I1_SR2	SilentIntronRegion	1	5.14	1.83	0.83	2.78	3.13	2.35	8.10
9	E2_Aa	NovelBoundary	0	6.78	6.65	5.14	2.95	6.89	6.06	12.86
10	ER2a	ExonRegion	0	2.60	3.95	4.57	0.71	9.18	3.78	2.84
11	E2_Da	NovelBoundary	1	4.56	1.16	1.41	4.50	1.15	4.29	16.27
12	E2a_E3a	KnownJunction	0	3.10	2.78	4.45	2.76	10.42	5.90	3.12
13	I2	Intron	1	3.98	4.13	1.69	2.65	1.04	3.64	7.44
14	I2_SR1	SilentIntronRegion	1	3.99	4.15	1.70	2.66	1.04	3.66	7.48
15	ER3a	ExonRegion	0	3.39	4.62	6.91	3.08	6.54	8.03	7.71
16	E3_Da	NovelBoundary	1	3.77	2.76	0.89	4.14	0.00	4.85	7.50
17	E3a_E4a	KnownJunction	0	5.51	2.73	3.03	0.00	0.99	0.00	1.50
18	ER4a	ExonRegion	0	23.79	11.61	11.78	13.20	15.22	19.66	24.62
19	E4_Da	NovelBoundary	0	5.87	1.16	3.15	2.14	0.00	3.94	8.11
20	E4a_E5a	KnownJunction	1	6.26	5.78	11.57	1.38	12.43	15.20	13.53
21	I4	Intron	0	10.31	3.46	2.71	2.66	1.03	5.23	4.88
22	I4_AR1	ActiveIntronRegion	1	10.23	1.30	1.38	2.30	0.37	3.72	4.06
23	I4_SR1	SilentIntronRegion	1	13.09	3.76	1.95	2.90	0.89	7.05	1.84
24	E5_Aa	NovelBoundary	1	2.85	5.36	4.94	2.79	1.04	7.75	12.67
25	ER5a	ExonRegion	0	9.22	11.07	13.05	7.28	11.66	26.53	18.36
26	E5_Da	NovelBoundary	1	11.80	1.63	1.42	1.68	1.13	2.76	3.12
27	E5a_E6a	KnownJunction	1	9.60	9.48	11.87	1.68	11.23	35.67	18.75
28	E6_Aa	NovelBoundary	1	9.73	5.99	1.42	12.95	0.00	6.00	1.69
29	ER6a	ExonRegion	1	20.33	7.38	21.60	17.05	12.78	38.19	24.00
30	E6_Da	NovelBoundary	1	25.69	8.46	3.36	8.51	0.00	20.29	6.51
31	E6a_E7a	KnownJunction	0	14.45	10.69	28.96	18.61	10.17	17.74	21.83
32	I6	Intron	0	8.58	4.30	1.63	4.22	0.74	13.94	4.36
33	I6_SR1	SilentIntronRegion	1	11.88	4.21	2.08	4.34	0.78	17.25	5.18
34	I6_AR1	ActiveIntronRegion	0	6.75	4.39	1.38	4.17	0.73	12.15	3.92
35	E7_Aa	NovelBoundary	0	2.15	8.25	0.00	9.10	0.00	13.99	5.07
36	ER7a	ExonRegion	0	13.02	15.55	21.25	22.19	12.04	39.58	22.53
37	E7a_E8a	KnownJunction	0	15.92	16.10	17.32	24.92	13.42	33.63	19.30
38	E8_Aa	NovelBoundary	1	7.03	2.81	0.00	2.82	2.01	1.26	10.65
39	ER8a	ExonRegion	0	15.92	14.11	13.06	26.62	11.30	39.20	25.38
40	E8a_E9a	KnownJunction	0	6.19	7.38	13.19	21.00	9.89	30.04	13.87
41	E9_Aa	NovelBoundary	1	11.92	1.18	3.66	4.52	0.00	3.30	1.48
42	ER9a	ExonRegion	1	11.44	6.12	11.15	23.25	9.97	45.26	21.19
43	E9_Da	NovelBoundary	0	9.46	3.13	2.87	9.08	0.00	5.17	7.68
44	E9a_E10a	KnownJunction	1	5.46	2.97	8.78	19.05	7.68	40.76	15.71
45	E10_Aa	NovelBoundary	1	6.44	4.94	1.60	5.15	3.34	8.63	10.12
46	ER10a	ExonRegion	1	3.82	4.68	10.68	23.43	8.80	41.85	15.97
47	E10_Da	NovelBoundary	1	6.59	3.21	2.05	10.62	0.99	18.12	10.20
48	E10a_E11a	KnownJunction	1	2.27	2.52	11.32	21.62	11.73	28.41	7.19
49	I10	Intron	1	4.50	1.83	1.27	3.70	1.02	19.29	6.81
50	I10_SR1	SilentIntronRegion	1	4.53	1.85	1.28	3.73	1.03	19.45	6.88
51	E11_Aa	NovelBoundary	0	10.82	3.10	7.31	8.80	0.97	18.25	6.42
52	ER11a	ExonRegion	0	10.53	10.46	8.85	22.41	10.78	49.31	20.05
53	E11_Da	NovelBoundary	1	7.53	0.00	4.96	5.85	1.18	7.88	0.69
54	E11a_E12a	KnownJunction	1	13.05	6.83	8.16	20.24	16.02	36.50	26.48
55	E11a_E17b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	ER12a	ExonRegion	0	11.74	12.65	9.21	19.22	7.77	46.13	21.86
57	E12a_E13a	KnownJunction	1	4.82	7.28	9.07	8.67	3.18	48.35	20.22
58	ER13a	ExonRegion	1	11.63	15.39	10.27	14.68	7.46	55.06	21.99
59	E13a_E14a	KnownJunction	0	15.50	11.66	8.94	12.76	8.28	46.20	22.57
60	E14_Aa	NovelBoundary	1	10.92	0.00	1.32	3.36	0.00	1.66	1.42
61	ER14a	ExonRegion	0	9.03	15.55	7.09	14.71	10.30	46.92	18.80
62	E14_Da	NovelBoundary	1	12.42	1.18	0.00	1.33	0.00	1.07	1.36
63	E14a_E15a	KnownJunction	1	6.14	9.12	8.65	12.90	5.99	46.15	14.56
64	ER15a	ExonRegion	0	11.71	11.51	11.00	17.76	7.02	46.38	21.67
65	E15a_E16a	KnownJunction	0	7.51	7.22	6.98	8.56	5.67	30.71	9.62
66	ER16a	ExonRegion	0	13.65	11.26	7.84	14.39	6.83	36.92	18.37
67	E16a_E17a	KnownJunction	0	22.48	8.30	8.29	21.97	17.22	31.17	23.66
68	ER17a	ExonRegion	0	29.87	14.26	17.54	22.56	13.88	56.61	26.74
69	E17a_E18a	KnownJunction	0	24.40	23.20	18.64	17.72	7.19	56.23	29.16
70	ER17b	ExonRegion	0	28.62	24.40	22.95	18.86	6.51	64.98	32.18
71	ER18a	ExonRegion	0	22.23	14.93	9.61	16.02	8.03	48.99	22.99
72	E18a_E19a	KnownJunction	0	19.58	7.33	9.80	19.88	11.62	33.39	14.83
73	I18	Intron	0	10.09	1.40	4.44	3.55	2.50	3.74	7.18
74	I18_SR2	SilentIntronRegion	0	24.96	1.63	11.57	5.75	5.40	6.12	10.93
75	I18_AR8	ActiveIntronRegion	0	12.60	0.75	5.37	3.72	2.96	4.27	7.52
76	ER19a	ExonRegion	0	7.20	3.90	2.76	6.11	2.38	12.38	5.71
77	Ix_AR4	ActiveIntronRegion	0	99.10	22.61	19.54	4.45	1.51	5.91	0.62
78	Ix_AR3	ActiveIntronRegion	0	80.86	24.97	11.87	3.42	1.41	7.04	3.20
79	Ix_SR2	SilentIntronRegion	0	86.20	23.01	21.94	7.03	2.78	5.52	0.89
80	Ix_AR1	ActiveIntronRegion	0	70.70	25.11	17.61	10.81	5.40	8.58	1.35
81	ER20a	ExonRegion	0	0.00	0.00	0.00	0.50	0.00	0.00	0.00