Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C17orf57	Gene	0	6.47	2.10	18.51	3.10	5.99	5.65	2.25
2	344176	Transcript	0	2.83	0.00	8.34	1.42	1.63	3.27	0.00
3	331493	Transcript	0	4.14	0.37	10.30	1.27	3.18	4.68	1.13
4	IG14	Intergenic	0	1.86	1.77	45.91	6.05	0.61	18.77	1.55
5	IG14_AR1	ActiveIntergenicRegion	0	9.26	2.46	186.75	17.63	3.47	55.97	9.35
6	IG14_SR2	SilentIntergenicRegion	0	0.49	0.31	21.91	3.68	0.14	11.33	0.62
7	IG14_AR5	ActiveIntergenicRegion	0	1.36	0.43	47.41	5.65	0.19	16.35	1.40
8	IG14_SR3	SilentIntergenicRegion	0	0.00	0.00	24.26	1.70	0.69	12.82	0.59
9	IG14_AR6	ActiveIntergenicRegion	0	1.91	1.23	60.05	6.24	0.65	26.52	1.40
10	IG14_SR5	SilentIntergenicRegion	0	0.29	0.00	15.72	0.92	0.22	3.90	0.47
11	IG14_AR8	ActiveIntergenicRegion	0	1.69	6.21	9.46	7.80	0.32	10.36	0.32
12	ER1a	ExonRegion	0	0.61	0.89	0.89	0.54	1.78	0.00	0.55
13	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	1.68	3.23	0.00	0.00
14	E2_Aa	NovelBoundary	0	0.00	0.00	7.43	9.97	1.01	8.95	0.00
15	ER2a	ExonRegion	0	0.05	1.21	0.70	1.82	2.43	0.04	0.02
16	E2_Da	NovelBoundary	0	0.83	2.44	6.64	8.83	2.21	10.45	0.00
17	E2a_E3a	KnownJunction	0	0.60	4.10	2.18	4.33	0.95	0.00	0.00
18	I2_AR1	ActiveIntronRegion	0	0.25	0.79	8.81	8.13	2.09	8.79	0.66
19	E3_Aa	NovelBoundary	0	0.75	0.00	9.73	1.52	0.00	3.83	0.00
20	ER3a	ExonRegion	0	2.58	2.81	15.36	6.11	6.96	4.55	0.91
21	E3_Da	NovelBoundary	0	0.00	0.00	7.04	1.54	0.00	8.58	0.00
22	E3a_E4a	KnownJunction	0	4.82	5.96	14.86	4.71	11.73	3.27	0.54
23	ER4a	ExonRegion	0	6.62	8.33	26.76	8.49	6.74	9.42	0.34
24	E4a_E5a	KnownJunction	0	11.33	7.36	26.89	4.82	10.54	10.24	2.04
25	ER5a	ExonRegion	0	9.10	7.56	32.03	6.44	10.94	11.84	1.91
26	E5a_E6a	KnownJunction	0	7.84	1.58	19.89	1.68	11.87	10.02	0.82
27	ER6a	ExonRegion	0	8.11	2.30	26.76	7.19	12.69	10.88	1.52
28	E6a_E7a	KnownJunction	0	7.21	4.18	31.31	13.25	10.05	9.00	0.00
29	ER7a	ExonRegion	0	4.24	4.15	23.81	12.60	11.50	11.26	1.34
30	E7a_E8a	KnownJunction	0	4.99	4.49	15.53	13.22	10.07	10.02	1.55
31	I7	Intron	0	2.15	0.34	9.23	1.05	2.29	1.55	0.38
32	I7_SR1	SilentIntronRegion	0	2.16	0.34	9.27	1.05	2.29	1.55	0.38
33	E8_Aa	NovelBoundary	0	1.44	0.00	11.35	0.00	4.36	0.00	0.00
34	ER8a	ExonRegion	0	9.51	5.37	28.34	9.42	9.85	7.50	1.81
35	E8a_E9a	KnownJunction	0	4.29	0.00	9.13	3.52	0.00	1.53	0.83
36	E8a_E10a	KnownJunction	0	5.66	0.00	16.63	2.84	3.25	6.54	0.00
37	I8_AR1	ActiveIntronRegion	0	1.87	2.60	5.80	0.00	9.02	0.59	0.00
38	I8_AR2	ActiveIntronRegion	0	2.01	0.85	10.76	2.70	9.89	1.28	0.45
39	ER9a	ExonRegion	0	5.96	0.64	11.07	1.67	5.20	7.31	1.09
40	E9_Da	NovelBoundary	0	1.03	1.47	9.77	4.28	6.48	7.64	0.63
41	E9a_E10a	KnownJunction	0	5.36	0.00	8.09	1.03	2.19	0.00	0.89
42	I9_AR1	ActiveIntronRegion	0	1.45	1.13	5.56	1.76	8.48	1.43	0.48
43	ER10a	ExonRegion	0	10.90	0.66	33.30	2.43	7.31	2.55	2.57
44	E10a_E11a	KnownJunction	0	9.51	0.00	27.07	0.00	1.11	0.00	0.85
45	ER11a	ExonRegion	0	9.05	1.32	20.32	0.29	3.15	3.52	1.02
46	E11a_E12a	KnownJunction	0	8.43	3.26	16.70	1.30	1.01	6.99	1.22
47	ER12a	ExonRegion	0	9.49	1.94	33.52	1.98	3.50	8.62	1.59
48	E12a_E13a	KnownJunction	0	9.71	4.52	26.53	6.18	4.50	6.49	2.38
49	ER13a	ExonRegion	0	7.90	3.21	25.31	5.59	4.48	7.20	2.13
50	E13a_E14a	KnownJunction	0	3.92	2.76	14.63	4.88	6.73	5.47	0.57
51	ER14a	ExonRegion	0	6.17	2.02	14.53	4.30	5.95	2.86	2.26
52	E14a_E15a	KnownJunction	0	5.24	2.97	12.23	0.00	3.30	1.58	1.61
53	ER15a	ExonRegion	0	7.78	1.68	32.63	3.98	5.37	8.04	1.94
54	E15a_E16a	KnownJunction	0	9.01	1.63	32.98	0.00	6.92	9.03	1.72
55	ER16a	ExonRegion	0	13.68	0.58	44.41	3.97	8.44	17.41	2.64
56	E16a_E17a	KnownJunction	0	14.00	0.00	40.84	4.31	3.16	27.82	2.38
57	E17_Aa	NovelBoundary	0	7.04	0.00	18.60	0.00	0.00	0.00	0.00
58	ER17a	ExonRegion	0	11.59	0.64	37.63	2.50	3.15	13.63	2.58
59	E17_Da	NovelBoundary	0	3.04	1.63	12.14	0.00	3.04	1.34	0.67
60	E17a_E19a	KnownJunction	0	1.82	0.00	2.39	0.00	0.88	0.00	0.00
61	I17_AR1	ActiveIntronRegion	0	3.48	1.06	21.19	1.30	3.78	4.27	0.47
62	I17_SR1	SilentIntronRegion	0	2.76	1.76	13.17	1.37	2.58	3.47	0.00
63	I17_AR2	ActiveIntronRegion	0	6.20	1.30	16.69	2.29	3.68	5.96	0.28
64	ER18a	ExonRegion	0	0.00	0.00	0.06	0.00	0.00	0.00	0.00
65	ER19a	ExonRegion	0	3.69	0.00	1.43	0.85	4.15	1.91	0.10
66	E19a_E20a	KnownJunction	0	0.72	0.00	1.39	1.57	0.00	2.73	0.60
67	ER20a	ExonRegion	0	1.80	0.00	5.08	1.39	0.87	4.43	1.37
68	E20a_E21a	KnownJunction	0	2.77	0.00	2.14	1.41	2.21	3.14	0.00
69	ER21a	ExonRegion	0	3.04	0.00	4.31	1.61	4.12	3.47	0.15
70	E21a_E22a	KnownJunction	0	1.80	0.00	2.64	0.00	2.17	0.00	0.67
71	ER22a	ExonRegion	0	0.79	0.00	1.91	1.22	1.73	0.00	0.67
72	E22a_E23a	KnownJunction	0	0.00	0.00	1.47	1.68	2.10	0.00	0.00
73	ER23a	ExonRegion	0	1.52	0.64	4.99	0.93	2.21	1.89	0.78
74	E23a_E24a	KnownJunction	0	1.39	0.00	1.75	0.00	3.18	5.84	0.00
75	ER24a	ExonRegion	0	2.29	0.00	4.29	0.00	5.29	3.71	0.01
76	E24_Da	NovelBoundary	0	3.71	2.94	13.31	0.00	6.09	2.49	2.39
77	E24a_E25a	KnownJunction	0	0.00	0.00	1.98	0.00	0.00	1.26	0.00
78	I24_SR4	SilentIntronRegion	0	5.33	1.42	6.23	0.68	7.63	1.12	3.91
79	E25_Aa	NovelBoundary	0	3.40	1.50	9.13	0.00	18.00	0.00	8.13
80	ER25a	ExonRegion	0	3.22	2.56	7.23	0.00	7.70	0.15	4.95
81	E25a_E26a	KnownJunction	0	0.00	0.00	0.69	0.00	0.00	0.00	0.00
82	I25	Intron	0	5.32	2.36	8.13	1.97	9.54	2.16	5.09
83	I25_AR1	ActiveIntronRegion	0	5.81	2.40	8.22	0.62	9.74	1.22	6.21
84	I25_SR1	SilentIntronRegion	0	8.14	1.02	6.81	0.00	8.75	2.60	2.29
85	I25_AR2	ActiveIntronRegion	0	3.09	4.40	6.64	1.81	9.28	1.76	5.21
86	I25_SR2	SilentIntronRegion	0	6.29	3.80	9.61	3.09	10.55	5.45	6.22
87	I25_AR3	ActiveIntronRegion	0	5.50	1.49	9.27	4.20	9.65	1.93	4.57
88	I25_SR3	SilentIntronRegion	0	3.54	0.40	7.77	1.31	9.12	2.66	5.09
89	E26_Aa	NovelBoundary	0	10.61	6.15	10.58	1.65	11.92	1.10	5.72
90	ER26a	ExonRegion	0	6.58	1.79	8.95	1.51	7.49	2.32	4.60
91	IG15_SR3	SilentIntergenicRegion	0	6.69	9.20	8.93	2.75	10.98	5.06	8.87
92	IG15_AR3	ActiveIntergenicRegion	0	6.83	3.39	7.87	2.90	10.66	2.88	6.24
93	IG15_AR4	ActiveIntergenicRegion	0	8.27	1.93	11.14	0.79	5.51	0.78	4.31
94	IG15_AR5	ActiveIntergenicRegion	0	6.62	6.32	19.75	0.88	6.52	3.55	2.76