Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ETV4	Gene	0	35.79	11.65	14.86	22.71	222.78	2.44	63.47
2	319349	Transcript	0	1.50	0.43	0.20	0.67	3.62	0.00	1.69
3	393664	Transcript	0	0.00	0.00	0.00	0.00	0.04	0.00	1.41
4	ER1a	ExonRegion	0	2.21	0.86	0.39	1.34	4.33	0.00	1.75
5	E1a_E3a	KnownJunction	0	0.80	0.00	0.00	0.00	2.90	0.00	1.63
6	E2_Aa	NovelBoundary	0	0.68	9.25	0.63	8.26	0.00	2.97	0.00
7	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.08	0.00	0.25
8	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.57
9	ER3a	ExonRegion	0	11.15	0.71	4.41	8.95	97.99	0.43	18.46
10	E3a_E4a	KnownJunction	0	35.53	3.21	10.66	12.57	136.27	1.66	36.40
11	E4_Aa	NovelBoundary	0	14.89	1.00	4.38	3.36	29.46	1.21	8.87
12	ER4a	ExonRegion	0	38.05	14.40	15.66	27.33	131.32	1.94	50.19
13	E4a_E5a	KnownJunction	0	43.98	14.16	14.15	32.35	187.60	0.00	70.31
14	ER5a	ExonRegion	0	45.71	25.71	18.94	43.93	184.93	8.40	103.18
15	E5a_E6a	KnownJunction	0	37.59	26.03	18.28	36.22	159.09	9.49	109.81
16	E6_Aa	NovelBoundary	1	8.88	10.01	24.56	25.03	4.73	7.75	9.17
17	ER6a	ExonRegion	0	75.56	31.83	30.07	49.12	354.43	8.76	132.27
18	E6_Da	NovelBoundary	1	13.39	14.03	26.70	12.03	11.60	13.11	2.69
19	E6a_E7a	KnownJunction	0	80.86	29.00	25.91	44.02	533.05	6.59	105.16
20	ER7a	ExonRegion	0	47.62	16.44	12.33	33.96	262.96	3.75	74.00
21	E7a_E8a	KnownJunction	0	44.06	14.11	19.36	25.44	380.58	0.00	124.91
22	E7a_E9a	NovelJunction	0	0.00	2.23	0.62	10.57	13.39	0.00	2.55
23	E8_Aa	NovelBoundary	0	15.79	5.99	6.27	6.15	111.37	0.00	36.42
24	ER8a	ExonRegion	0	40.86	11.27	12.40	17.55	248.17	0.58	84.39
25	E8a_E9a	KnownJunction	0	31.43	7.30	15.71	11.16	209.27	0.00	68.63
26	E8a_E10a	NovelJunction	0	1.62	0.00	0.00	0.00	11.76	0.00	1.68
27	ER9a	ExonRegion	0	28.64	9.39	12.14	21.51	172.43	0.71	57.76
28	E9a_E10a	KnownJunction	0	39.20	7.91	13.11	18.50	266.68	4.45	80.43
29	ER10a	ExonRegion	0	31.29	9.62	15.25	14.43	221.10	2.47	58.06
30	E10a_E11a	KnownJunction	0	30.28	6.78	19.26	11.92	179.51	0.00	54.92
31	ER11a	ExonRegion	0	33.99	8.01	15.45	17.24	256.07	1.99	83.53
32	E11a_E12a	KnownJunction	0	39.66	12.32	12.44	27.74	275.34	5.98	96.94
33	ER12a	ExonRegion	0	60.24	14.39	18.30	28.42	395.80	4.00	88.01
34	E12a_E13a	KnownJunction	0	47.90	16.37	10.94	43.89	560.35	1.05	94.14
35	ER13a	ExonRegion	0	62.94	14.58	23.77	43.95	429.71	0.97	117.93
36	E13_Da	NovelBoundary	1	34.63	1.60	6.12	0.00	2.35	0.00	0.82
37	E13a_E14a	KnownJunction	0	76.81	25.59	21.45	34.43	418.85	2.17	98.83
38	ER14a	ExonRegion	0	38.84	13.92	19.44	25.45	257.40	3.39	68.44
39	IG28	Intergenic	0	18.47	22.20	24.81	38.22	30.05	25.57	21.29
40	IG28_AR5	ActiveIntergenicRegion	0	22.45	34.25	32.47	59.54	43.02	40.14	30.59
41	IG28_SR2	SilentIntergenicRegion	0	29.59	12.32	28.94	24.77	21.50	14.03	15.61
42	IG28_AR4	ActiveIntergenicRegion	0	47.69	13.60	47.57	23.81	59.20	17.48	24.33
43	IG28_AR3	ActiveIntergenicRegion	0	37.78	9.52	39.29	16.83	52.10	11.03	19.11
44	IG28_AR2	ActiveIntergenicRegion	0	34.10	26.24	40.89	37.68	43.79	26.18	30.68
45	IG28_SR1	SilentIntergenicRegion	0	7.17	10.37	19.00	16.79	23.11	13.39	9.76
46	IG28_AR1	ActiveIntergenicRegion	0	12.26	11.54	27.32	23.45	25.82	18.01	16.80