Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HAP1	Gene	0	16.70	18.16	15.39	30.46	15.37	5.31	32.89
2	341193	Transcript	1	1.67	2.70	2.27	9.25	0.56	0.51	10.64
3	347901	Transcript	1	10.66	7.57	15.65	26.82	0.95	3.16	30.07
4	393939	Transcript	0	0	0	0	0	0	0	0
5	310778	Transcript	0	1.74	2.01	0.62	3.27	0.52	0.00	0.77
6	IG14	Intergenic	0	14.97	14.57	3.50	8.14	0.16	2.65	14.38
7	IG14_SR1	SilentIntergenicRegion	0	14.98	14.57	3.50	8.14	0.16	2.65	14.38
8	ER1a	ExonRegion	0	0.49	0.99	0.00	0.00	0.00	0.00	3.92
9	ER1b	ExonRegion	0	4.30	10.30	7.28	21.79	3.08	1.61	17.02
10	E1_Da	NovelBoundary	0	7.74	11.69	2.76	4.85	0.00	0.00	1.99
11	E1a_E2a	KnownJunction	1	2.60	4.52	17.52	48.82	14.50	6.22	24.06
12	E2_Aa	NovelBoundary	0	9.30	7.64	4.37	3.87	1.01	0.00	11.21
13	ER2a	ExonRegion	0	9.61	17.87	20.80	40.00	9.69	2.21	31.81
14	E2_Da	NovelBoundary	0	6.06	5.83	4.51	7.34	1.01	1.66	9.32
15	E2a_E3a	KnownJunction	0	11.02	12.35	14.07	26.77	3.34	0.00	25.34
16	E2b_E3a	KnownJunction	1	1.92	3.26	2.83	14.49	0.88	1.07	14.49
17	ER2b	ExonRegion	1	2.59	3.85	3.98	13.25	0.81	0.46	13.52
18	ER3a	ExonRegion	0	15.38	16.65	21.83	48.95	11.61	4.84	49.99
19	E3a_E4a	KnownJunction	1	9.96	14.61	22.56	48.95	11.80	5.55	54.17
20	ER4a	ExonRegion	0	14.63	23.26	26.29	55.23	13.54	3.73	52.51
21	E4_Da	NovelBoundary	0	9.33	5.54	4.43	8.34	1.18	1.53	2.84
22	E4a_E5a	KnownJunction	1	12.78	22.62	31.41	60.66	19.04	2.12	65.12
23	ER5a	ExonRegion	0	13.42	24.89	24.39	51.82	13.02	2.76	54.90
24	E5_Da	NovelBoundary	0	6.76	7.15	4.93	12.16	0.90	0.00	2.95
25	E5a_E6a	KnownJunction	1	8.81	25.61	17.01	53.29	10.95	5.36	56.91
26	E6_Aa	NovelBoundary	0	9.25	10.06	7.14	5.47	2.19	0.00	2.97
27	ER6a	ExonRegion	1	6.63	15.29	16.07	48.04	17.07	5.82	54.96
28	E6_Da	NovelBoundary	0	16.01	8.96	13.47	9.73	1.04	1.37	10.10
29	E6a_E7a	KnownJunction	1	2.49	5.20	8.82	34.57	15.19	2.89	39.40
30	I6	Intron	0	11.21	11.20	9.29	8.99	0.93	0.77	10.77
31	I6_SR1	SilentIntronRegion	0	11.23	11.23	9.31	9.01	0.93	0.77	10.79
32	E7_Aa	NovelBoundary	0	6.21	12.11	2.80	10.24	0.97	2.09	9.26
33	ER7a	ExonRegion	1	4.41	7.20	12.36	35.63	14.34	1.84	46.19
34	E7_Da	NovelBoundary	0	10.16	17.42	5.58	20.86	0.00	3.06	9.32
35	E7a_E8a	KnownJunction	1	0.80	0.00	10.09	0.00	0.00	0.00	35.48
36	E7a_E10a	KnownJunction	1	0.00	1.63	0.00	17.91	9.73	0.00	2.42
37	I7	Intron	0	4.89	7.91	3.66	11.37	0.98	1.28	5.97
38	I7_AR1	ActiveIntronRegion	0	4.92	7.96	3.68	11.44	0.99	1.29	6.01
39	E8_Aa	NovelBoundary	0	16.97	18.02	8.25	27.90	3.04	4.02	18.66
40	ER8a	ExonRegion	1	6.49	3.55	14.33	12.07	2.65	0.92	31.27
41	E8_Da	NovelBoundary	0	5.52	5.02	5.33	10.08	0.00	0.00	3.00
42	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	E8a_E10a	KnownJunction	0	10.66	7.57	15.65	26.82	0.95	3.16	30.07
44	E9_Aa	NovelBoundary	1	2.42	6.99	4.14	1.68	0.00	1.39	8.91
45	ER9a	ExonRegion	0	5.21	4.40	1.85	8.12	1.56	0.00	2.30
46	E9_Da	NovelBoundary	1	9.10	9.41	2.73	4.77	1.91	3.81	12.97
47	E9a_E10a	KnownJunction	0	0.00	1.63	0.00	1.68	0.00	0.00	0.00
48	E10_Aa	NovelBoundary	0	4.21	8.70	5.06	4.31	2.12	0.00	8.47
49	ER10a	ExonRegion	0	9.82	20.27	18.29	41.24	8.99	4.61	39.90
50	E10a_E11a	KnownJunction	1	3.00	22.07	12.85	44.29	5.67	1.66	47.44
51	ER11a	ExonRegion	1	0.59	10.06	9.47	30.85	9.88	1.35	25.31
52	E11_Da	NovelBoundary	0	10.35	7.67	7.50	3.09	2.01	1.50	12.73
53	E11a_E12a	KnownJunction	1	0.62	2.71	4.56	12.30	11.62	0.00	10.28
54	E12_Aa	NovelBoundary	1	5.24	4.89	1.31	4.04	0.00	4.56	8.90
55	ER12a	ExonRegion	1	9.10	16.69	13.21	39.06	11.38	2.55	43.82
56	E12_Da	KnownBoundary	0	7.23	16.92	2.01	5.80	2.12	1.23	7.47
57	ER12b	ExonRegion	1	34.78	24.46	19.67	16.54	27.37	11.63	18.35
58	IG13	Intergenic	0	5.11	4.75	1.42	4.43	0.19	1.00	8.30
59	IG13_SR1	SilentIntergenicRegion	0	5.11	4.75	1.42	4.43	0.19	1.00	8.30