Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CNP	Gene	0	50.91	55.28	42.96	37.73	76.10	64.24	73.40
2	393892	Transcript	1	8.06	7.99	7.99	10.30	14.87	24.30	7.86
3	310262	Transcript	0	0	0	0	0	0	0	0
4	393888	Transcript	0	0.00	0.00	0.00	0.00	1.18	0.00	0.75
5	IG22	Intergenic	0	3.04	8.40	3.17	9.50	0.82	13.06	5.83
6	IG22_AR1	ActiveIntergenicRegion	0	0.96	2.92	2.07	3.49	0.89	8.64	2.66
7	IG22_SR1	SilentIntergenicRegion	0	5.46	13.15	4.30	14.11	1.44	26.01	7.32
8	IG22_AR2	ActiveIntergenicRegion	0	3.30	19.02	4.37	10.66	0.70	21.10	8.08
9	IG22_AR3	ActiveIntergenicRegion	0	3.14	6.66	4.02	10.35	1.08	9.41	6.91
10	ER1a	ExonRegion	0	3.04	1.90	1.82	2.53	21.71	4.94	0.76
11	E1_Ab	KnownBoundary	0	9.28	2.94	6.35	3.36	43.52	7.16	5.80
12	E1_Ac	KnownBoundary	0	9.01	25.25	7.96	12.95	24.87	22.51	14.88
13	ER1b	ExonRegion	0	7.68	17.56	3.82	9.98	53.30	22.07	2.64
14	ER1c	ExonRegion	0	5.96	28.63	3.78	16.54	31.93	39.35	11.37
15	E1a_E2a	KnownJunction	1	10.93	24.38	7.52	13.52	37.53	21.09	34.87
16	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.75
17	I1	Intron	0	2.59	13.35	2.42	12.95	0.52	14.25	8.00
18	I1_AR1	ActiveIntronRegion	0	0.90	3.31	0.61	8.51	0.66	10.27	3.03
19	I1_SR1	SilentIntronRegion	0	2.90	5.90	1.85	12.93	0.38	9.49	4.32
20	I1_AR2	ActiveIntronRegion	0	2.75	18.34	2.98	13.75	0.56	17.04	10.47
21	E2_Aa	NovelBoundary	0	5.49	10.30	0.53	13.41	1.08	10.85	11.05
22	E2_Ab	NovelBoundary	0	5.97	20.81	5.04	7.45	0.90	12.41	6.92
23	ER2a	ExonRegion	0	10.89	33.61	8.02	21.41	35.23	29.22	29.46
24	ER2b	ExonRegion	0	84.48	137.76	72.55	65.41	134.48	113.68	161.90
25	E2_Da	NovelBoundary	0	17.36	14.00	18.94	15.01	7.49	17.07	36.07
26	E2a_E3a	KnownJunction	0	143.08	127.00	154.19	73.34	91.20	143.30	236.91
27	I2	Intron	0	12.66	13.29	8.35	9.69	5.84	12.99	16.05
28	I2_AR1	ActiveIntronRegion	1	12.83	17.39	10.27	10.01	5.85	15.78	27.93
29	I2_SR1	SilentIntronRegion	1	13.92	18.88	12.47	10.11	6.61	13.85	16.16
30	I2_AR2	ActiveIntronRegion	0	12.23	9.86	6.31	9.44	5.62	11.55	10.88
31	E3_Aa	NovelBoundary	1	16.34	17.73	1.77	22.68	0.00	14.95	10.06
32	ER3a	ExonRegion	0	125.28	140.99	128.81	72.74	198.45	129.21	203.78
33	E3_Da	NovelBoundary	0	5.99	12.48	3.78	14.71	0.85	18.79	5.35
34	E3a_E4a	KnownJunction	0	96.60	101.43	85.07	83.33	187.40	116.12	216.18
35	I3	Intron	0	4.43	13.04	3.63	10.58	3.59	11.15	7.35
36	I3_SR1	SilentIntronRegion	0	4.64	14.35	4.01	9.58	3.96	11.48	7.85
37	I3_AR1	ActiveIntronRegion	0	3.79	9.00	2.46	14.03	2.44	10.28	5.86
38	ER4a	ExonRegion	0	92.77	81.43	71.30	56.08	150.01	74.24	122.05
39	E4_Da	KnownBoundary	0	9.83	13.58	4.30	9.89	5.19	18.01	9.72
40	E4_Db	KnownBoundary	0	10.92	7.83	6.25	19.70	0.00	12.25	5.83
41	ER4b	ExonRegion	0	24.08	36.45	13.77	31.59	10.53	32.28	20.69
42	ER4c	ExonRegion	1	13.09	14.08	14.16	18.07	8.02	43.66	14.95