Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MPP3	Gene	0	35.92	67.49	61.36	110.40	9.87	30.32	45.58
2	356492	Transcript	0	0	0	0	0	0	0	0
3	398389	Transcript	0	0.23	0.05	0.08	0.19	0.27	0.00	0.29
4	398393	Transcript	0	5.07	10.94	10.04	18.10	0.70	3.27	1.73
5	ER1a	ExonRegion	1	7.12	10.36	12.73	29.70	5.29	2.63	8.52
6	E1a_E2a	KnownJunction	1	22.77	29.27	44.85	100.32	6.36	10.34	22.73
7	ER2a	ExonRegion	1	24.04	37.99	37.43	88.66	4.41	10.87	27.01
8	E2a_E3b	KnownJunction	0	15.29	33.86	19.56	58.65	3.23	9.97	20.16
9	E3_Aa	NovelBoundary	1	8.06	20.94	12.72	13.09	0.00	1.10	2.87
10	ER3a	ExonRegion	1	10.15	21.88	20.07	36.19	1.39	6.55	2.78
11	E3_Ab	KnownBoundary	0	10.46	15.16	9.83	29.23	0.90	0.00	1.58
12	ER3b	ExonRegion	1	54.47	69.55	63.74	143.95	4.98	34.79	29.20
13	E3a_E4a	KnownJunction	1	72.33	104.48	96.44	199.26	11.16	49.10	42.76
14	ER4a	ExonRegion	0	100.23	162.56	156.70	273.47	18.88	64.24	76.99
15	E4_Da	NovelBoundary	1	15.09	10.53	10.16	15.93	0.00	8.63	4.60
16	E4a_E5a	KnownJunction	0	118.10	179.64	183.06	286.33	11.50	78.44	110.08
17	ER5a	ExonRegion	0	73.94	144.58	121.08	212.40	7.97	56.88	79.13
18	E5_Da	NovelBoundary	0	12.28	19.15	23.70	17.72	0.92	5.87	9.69
19	E5a_E6a	KnownJunction	0	47.67	128.47	88.25	161.71	7.63	47.70	49.87
20	ER6a	ExonRegion	0	49.09	99.74	95.32	172.03	15.01	38.17	57.21
21	E6_Da	NovelBoundary	1	16.69	40.56	11.91	44.92	2.14	4.61	12.53
22	E6a_E7a	KnownJunction	0	38.89	76.55	71.26	107.55	8.44	17.31	66.87
23	I6	Intron	0	13.02	16.05	13.63	24.56	0.70	4.35	8.26
24	I6_AR1	ActiveIntronRegion	0	13.12	16.18	13.74	24.77	0.70	4.38	8.33
25	E7_Aa	NovelBoundary	0	19.59	34.52	29.50	28.31	1.18	6.65	17.60
26	ER7a	ExonRegion	0	50.97	97.76	80.27	168.04	13.12	34.43	62.72
27	E7a_E8a	KnownJunction	0	50.69	88.77	89.57	160.92	13.44	30.79	63.42
28	ER8a	ExonRegion	0	39.61	93.90	73.25	156.51	9.26	33.71	55.05
29	E8a_E9a	KnownJunction	0	38.24	82.39	61.73	155.72	9.84	33.29	51.12
30	E8a_E10a	NovelJunction	0	0.92	4.83	3.92	12.95	0.00	2.79	1.45
31	ER9a	ExonRegion	0	34.22	75.89	63.87	172.72	16.09	29.98	57.75
32	E9_Da	NovelBoundary	1	31.51	69.23	35.31	68.05	8.41	13.94	32.93
33	E9a_E10a	KnownJunction	0	38.02	67.89	57.28	136.46	13.07	27.52	52.45
34	I9	Intron	0	26.92	38.27	38.79	46.63	3.99	10.65	25.37
35	I9_SR1	SilentIntronRegion	1	23.88	45.39	27.81	55.56	4.22	10.02	30.91
36	I9_AR1	ActiveIntronRegion	1	22.16	32.90	26.93	53.10	7.71	7.68	22.56
37	I9_AR3	ActiveIntronRegion	1	35.42	43.86	57.57	55.35	7.40	11.37	42.84
38	I9_AR4	ActiveIntronRegion	0	37.64	46.95	62.80	66.32	6.45	19.17	35.01
39	I9_AR5	ActiveIntronRegion	0	17.70	21.19	25.59	29.46	1.67	8.64	13.31
40	I9_SR3	SilentIntronRegion	0	13.04	19.92	17.63	18.05	0.94	4.19	8.34
41	I9_AR12	ActiveIntronRegion	0	31.64	45.40	46.11	53.40	3.07	11.63	26.05
42	I9_SR4	SilentIntronRegion	0	17.52	20.78	24.51	17.80	2.66	9.00	13.97
43	E10_Aa	NovelBoundary	0	40.77	38.30	45.99	49.87	3.25	11.90	35.86
44	ER10a	ExonRegion	0	37.62	80.25	62.52	132.74	12.63	31.83	47.95
45	E10_Da	NovelBoundary	0	11.58	5.88	10.68	3.87	2.26	5.98	5.76
46	E10a_E11a	KnownJunction	0	34.93	72.38	65.20	125.65	11.07	40.68	38.22
47	E10a_E12a	NovelJunction	1	0.00	0.00	0.56	11.59	1.11	0.99	9.26
48	ER11a	ExonRegion	0	25.18	56.03	36.93	91.58	5.00	25.95	29.05
49	E11a_E12a	KnownJunction	0	15.09	44.58	34.40	79.59	5.05	19.67	19.12
50	I11_SR2	SilentIntronRegion	0	12.17	8.35	11.95	7.95	1.71	1.99	6.11
51	ER12a	ExonRegion	0	7.27	22.73	17.59	40.17	1.93	9.69	11.67
52	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	E12a_E14a	KnownJunction	0	0.00	0.00	3.13	0.00	0.00	0.00	0.00
54	E12a_E15b	NovelJunction	0	14.35	57.51	35.91	89.29	4.59	14.98	31.79
55	E13a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	ER13a	ExonRegion	0	0.09	0.00	0.00	0.00	0.09	0.00	0.22
57	I13	Intron	1	6.22	8.53	9.33	5.64	1.78	1.75	10.66
58	I13_SR1	SilentIntronRegion	1	7.74	7.25	11.72	5.48	1.96	0.98	12.37
59	I13_AR1	ActiveIntronRegion	1	6.04	10.64	9.18	6.00	1.74	2.82	11.59
60	E14a_E15b	KnownJunction	0	0.00	0.00	0.60	1.63	1.18	0.00	0.89
61	ER14a	ExonRegion	0	0.04	0.12	2.45	1.37	0.81	0.12	1.28
62	ER15a	ExonRegion	0	0.83	0.19	0.31	0.77	1.00	0.00	0.93
63	ER15b	ExonRegion	0	6.33	17.10	8.24	37.50	6.52	5.47	9.77
64	E15_Da	NovelBoundary	1	18.48	19.10	19.97	25.68	11.16	5.82	34.78
65	E15a_E16a	KnownJunction	0	16.74	44.45	17.06	88.72	9.57	18.47	21.35
66	I15	Intron	1	22.11	16.22	26.45	18.69	5.82	4.66	26.87
67	I15_AR1	ActiveIntronRegion	1	27.86	16.48	28.01	20.87	6.33	4.84	27.13
68	I15_AR2	ActiveIntronRegion	1	12.92	16.71	25.16	15.80	5.21	4.59	27.96
69	E16_Aa	NovelBoundary	1	11.42	30.76	23.51	28.58	2.10	9.70	30.07
70	ER16a	ExonRegion	0	20.88	62.83	47.44	106.00	8.52	28.49	35.44
71	E16a_E17a	KnownJunction	0	27.79	62.08	58.83	94.71	6.41	24.90	30.24
72	ER17a	ExonRegion	0	48.00	91.10	78.11	142.48	17.25	43.88	64.36
73	E17_Da	NovelBoundary	0	14.29	8.75	13.91	11.46	5.09	0.00	10.07
74	E17a_E18a	KnownJunction	0	45.55	106.22	106.77	167.91	12.22	59.01	76.37
75	I17	Intron	1	10.68	11.78	11.38	10.71	2.59	2.93	11.62
76	I17_AR1	ActiveIntronRegion	1	10.69	11.79	11.39	10.72	2.60	2.93	11.63
77	E18_Aa	NovelBoundary	0	17.17	11.17	15.15	21.13	4.29	16.64	24.23
78	ER18a	ExonRegion	0	65.55	156.39	158.28	210.50	27.07	73.69	133.35
79	E18a_E19a	KnownJunction	0	109.94	179.04	198.94	238.29	21.51	82.95	127.26
80	ER19a	ExonRegion	0	108.19	155.80	181.38	235.02	20.74	86.27	143.68
81	E19a_E20a	KnownJunction	0	87.07	116.51	163.94	222.61	27.04	83.75	109.58
82	E20_Aa	NovelBoundary	0	14.62	1.21	13.75	4.82	0.00	0.00	7.81
83	ER20a	ExonRegion	0	99.77	112.81	148.83	186.57	23.24	76.30	107.85
84	E20_Da	NovelBoundary	0	16.26	6.94	18.24	2.74	3.20	6.19	7.15
85	E20a_E21a	KnownJunction	0	52.94	97.49	102.20	158.29	6.32	59.66	69.82
86	I20_SR1	SilentIntronRegion	0	12.43	8.38	10.65	8.51	3.65	2.31	6.75
87	ER21a	ExonRegion	0	39.87	94.52	71.26	139.37	12.10	46.93	62.08
88	E21_Da	KnownBoundary	0	14.54	22.88	31.20	40.20	8.35	11.20	14.65
89	ER21b	ExonRegion	0	9.97	13.19	15.65	25.31	5.55	3.86	16.25
90	ER21c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.67