Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NPEPPS	Gene	0	233.83	240.38	224.50	189.96	301.11	230.76	280.37
2	322157	Transcript	0	255.78	270.34	256.41	212.45	336.44	223.61	292.76
3	IG15_SR3	SilentIntergenicRegion	0	6.69	9.20	8.93	2.75	10.98	5.06	8.87
4	IG15_AR3	ActiveIntergenicRegion	0	6.83	3.39	7.87	2.90	10.66	2.88	6.24
5	IG15_AR4	ActiveIntergenicRegion	0	8.27	1.93	11.14	0.79	5.51	0.78	4.31
6	IG15_AR5	ActiveIntergenicRegion	0	6.62	6.32	19.75	0.88	6.52	3.55	2.76
7	ER1a	ExonRegion	0	20.53	65.60	17.27	47.79	18.21	52.69	27.59
8	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER2a	ExonRegion	0	164.57	115.04	143.17	88.71	118.62	98.57	123.86
10	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER3a	ExonRegion	0	107.30	112.45	118.66	85.90	39.23	128.71	121.76
12	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER4a	ExonRegion	0	241.41	204.13	242.44	160.64	221.31	191.61	232.16
14	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER5a	ExonRegion	0	192.25	197.77	212.90	156.74	211.12	169.69	246.11
16	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER6a	ExonRegion	0	450.41	391.24	437.32	291.08	455.11	314.28	453.02
18	E6_Da	NovelBoundary	0	105.63	75.61	55.02	44.38	44.03	33.45	80.13
19	E6a_E7a	KnownJunction	0	480.37	296.42	430.36	257.56	651.43	292.76	409.12
20	ER7a	ExonRegion	0	393.59	309.71	383.59	260.32	423.95	282.28	405.03
21	E7a_E8a	KnownJunction	0	150.99	230.11	220.92	161.25	361.77	188.16	257.98
22	ER8a	ExonRegion	0	273.56	317.29	322.04	269.93	523.04	227.06	402.75
23	E8a_E9a	KnownJunction	0	219.87	184.53	201.44	202.99	421.36	121.75	291.04
24	ER9a	ExonRegion	0	314.07	356.71	304.30	250.44	426.19	269.26	412.85
25	E9a_E10a	KnownJunction	0	243.17	423.02	283.90	260.29	397.52	212.25	356.92
26	I9_AR5	ActiveIntronRegion	0	53.51	3.10	27.33	1.49	5.25	5.52	11.30
27	I9_AR6	ActiveIntronRegion	0	120.70	12.15	67.48	3.72	8.03	10.34	26.24
28	I9_AR7	ActiveIntronRegion	0	115.68	15.30	71.06	6.29	15.09	9.42	31.31
29	I9_AR8	ActiveIntronRegion	0	63.25	13.50	41.36	5.40	5.94	4.84	20.99
30	ER10a	ExonRegion	0	247.38	331.65	254.56	228.59	351.83	238.31	376.69
31	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E10a_E14a	NovelJunction	1	0.00	1.55	0.88	0.00	1.18	8.63	0.00
33	E11_Aa	NovelBoundary	1	71.28	65.92	45.99	49.98	20.03	23.50	25.48
34	ER11a	ExonRegion	0	316.19	193.96	308.00	164.92	480.53	148.23	347.43
35	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER12a	ExonRegion	0	318.93	313.13	343.19	239.54	370.90	189.81	343.77
37	E12a_E13a	KnownJunction	0	338.84	368.12	391.79	301.04	420.71	258.89	400.43
38	ER13a	ExonRegion	0	385.56	396.47	410.77	286.59	476.70	269.75	460.43
39	E13a_E14a	KnownJunction	0	363.39	342.05	371.59	260.32	459.90	224.42	372.24
40	ER14a	ExonRegion	0	318.84	373.09	382.28	281.21	469.17	247.48	397.23
41	E14a_E15a	KnownJunction	0	257.73	382.17	350.62	300.79	470.23	272.23	399.63
42	ER15a	ExonRegion	0	285.09	339.81	320.07	263.22	412.46	252.07	403.20
43	E15a_E16a	KnownJunction	0	356.81	360.55	319.55	282.83	420.25	286.46	406.10
44	ER16a	ExonRegion	0	301.17	367.48	309.34	284.66	352.04	318.75	398.44
45	E16a_E17a	KnownJunction	0	233.68	357.21	299.88	266.74	218.10	280.51	368.22
46	ER17a	ExonRegion	0	260.54	316.27	288.57	255.36	338.47	298.26	324.33
47	E17a_E18a	KnownJunction	0	269.19	364.07	305.93	288.47	330.55	358.10	346.83
48	ER18a	ExonRegion	0	357.13	413.43	337.56	316.50	402.46	356.86	367.37
49	E18a_E19a	KnownJunction	0	397.95	420.16	378.47	343.95	584.00	374.39	408.06
50	ER19a	ExonRegion	0	414.34	401.16	369.65	320.69	531.35	359.75	391.57
51	E19a_E20a	KnownJunction	0	398.42	365.04	343.84	284.21	483.46	302.60	320.71
52	ER20a	ExonRegion	0	505.55	483.81	424.96	379.77	492.48	424.96	436.54
53	E20a_E21a	KnownJunction	0	411.61	449.27	309.03	333.74	592.48	357.03	340.60
54	ER21a	ExonRegion	0	438.51	423.63	387.35	342.75	579.93	406.76	447.57
55	E21a_E22a	KnownJunction	0	315.69	356.03	310.47	290.74	486.09	378.23	359.45
56	E21a_E23a	NovelJunction	1	1.03	27.98	1.62	7.61	0.00	32.13	0.00
57	ER22a	ExonRegion	0	328.71	370.15	311.51	330.57	460.75	398.58	420.81
58	E22a_E23a	KnownJunction	0	270.68	313.60	248.35	284.13	428.64	291.53	366.01
59	ER23a	ExonRegion	0	165.90	158.86	142.56	135.41	257.46	219.21	230.31
60	IG16_AR4	ActiveIntergenicRegion	0	5.21	3.18	10.81	8.28	4.69	7.98	5.23
61	IG16_AR9	ActiveIntergenicRegion	0	1.96	5.07	3.20	4.38	7.73	3.50	0.44
62	IG16_AR10	ActiveIntergenicRegion	0	0.74	2.22	1.25	2.29	7.64	2.29	1.27