Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ARL17P1	Gene	0	9.59	6.87	6.84	9.40	22.42	8.01	5.73
2	398255	Transcript	0	11.19	8.11	6.99	9.90	26.44	6.92	6.73
3	337845	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	258959	Transcript	0	1.50	0.68	3.07	5.85	0.00	9.69	0.62
5	258958	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER1b	ExonRegion	0	0.00	0.00	0.00	0.58	0.00	0.00	0.00
8	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER2a	ExonRegion	0	0.29	0.00	0.55	0.51	0.00	0.20	0.27
10	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER3a	ExonRegion	0	1.39	0.14	3.69	4.27	0.68	1.56	0.05
12	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E3a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	I3_SR5	SilentIntronRegion	0	24.71	9.11	10.78	7.01	22.83	5.11	2.98
15	I3_AR6	ActiveIntronRegion	0	10.37	4.64	8.12	3.30	10.76	1.64	2.22
16	ER4a	ExonRegion	0	0.38	0.00	3.68	0.98	1.31	6.10	0.25
17	E4_Ab	KnownBoundary	0	46.53	34.02	44.79	26.20	80.82	36.69	115.71
18	ER4b	ExonRegion	1	5.29	3.82	8.56	10.43	24.92	22.46	5.80
19	E4_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER4c	ExonRegion	0	11.19	8.11	6.99	9.90	26.44	6.92	6.73
23	E4_Db	NovelBoundary	0	13.97	18.18	6.68	24.65	52.74	14.02	6.52
24	Ix	Intron	0	16.43	11.36	13.74	14.26	51.52	10.11	12.71
25	Ix_AR3	ActiveIntronRegion	0	34.01	4.51	31.41	9.95	165.73	11.95	17.86
26	Ix_AR1	ActiveIntronRegion	0	19.26	15.06	15.96	18.68	59.11	12.54	15.94
27	Ix_SR1	SilentIntronRegion	0	13.26	4.40	8.26	6.08	14.63	4.60	4.09
28	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E5_Da	NovelBoundary	0	41.46	29.53	27.49	37.58	40.60	69.17	20.29
30	ER6a	ExonRegion	0	13.43	8.24	28.40	34.46	1.35	53.72	1.91
31	E6_Da	KnownBoundary	0	45.21	32.45	68.47	101.84	61.37	144.34	33.81
32	ER6b	ExonRegion	0	3.00	1.37	6.14	11.69	0.00	19.39	1.24