Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ABCC3	Gene	0	116.00	15.69	390.61	82.37	0.63	1.88	57.26
2	285238	Transcript	0	99.30	14.51	337.51	78.81	0.37	1.60	50.69
3	IG45_AR1	ActiveIntergenicRegion	0	0.37	0.00	0.54	0.00	3.14	24.00	0.65
4	ER1a	ExonRegion	1	44.45	6.32	66.34	29.99	0.00	0.27	9.88
5	E1a_E2a	KnownJunction	0	44.48	12.14	64.36	44.84	0.00	1.50	17.44
6	I1	Intron	1	4.61	0.88	35.76	1.20	0.20	0.16	13.02
7	I1_AR2	ActiveIntronRegion	1	6.49	0.22	55.61	2.00	0.08	0.00	15.78
8	I1_SR3	SilentIntronRegion	1	4.63	1.11	45.65	0.94	0.11	0.31	15.69
9	I1_AR3	ActiveIntronRegion	1	5.38	0.00	50.42	3.74	0.00	0.00	19.76
10	I1_SR4	SilentIntronRegion	1	4.11	0.00	35.39	1.68	0.20	0.00	12.03
11	I1_AR4	ActiveIntronRegion	1	4.60	1.72	34.13	1.94	0.00	0.00	15.25
12	I1_AR7	ActiveIntronRegion	1	6.42	0.93	34.25	0.63	0.14	0.00	11.76
13	I1_SR6	SilentIntronRegion	1	3.76	1.07	35.81	1.06	0.39	0.14	15.12
14	I1_AR8	ActiveIntronRegion	1	5.13	0.70	36.81	1.55	0.34	0.00	15.90
15	I1_AR10	ActiveIntronRegion	1	3.57	1.46	29.46	1.25	0.66	0.00	11.66
16	I1_AR11	ActiveIntronRegion	1	4.93	0.00	27.78	1.31	0.00	0.00	18.16
17	E2_Aa	NovelBoundary	1	11.50	1.52	49.48	6.10	0.00	0.00	32.02
18	ER2a	ExonRegion	0	58.83	18.47	136.18	64.12	0.30	1.54	30.37
19	E2a_E3a	KnownJunction	0	62.50	21.52	160.14	69.98	1.06	2.95	28.66
20	ER3a	ExonRegion	0	68.51	21.23	179.52	71.64	0.23	1.69	35.91
21	E3a_E4a	KnownJunction	0	65.64	21.38	149.08	100.48	0.00	2.52	37.98
22	E4_Aa	NovelBoundary	1	20.56	11.35	75.53	3.77	0.00	0.00	22.90
23	ER4a	ExonRegion	0	173.08	32.82	416.63	114.94	0.58	0.28	73.89
24	E4a_E5a	KnownJunction	0	108.57	38.49	328.68	126.33	0.00	0.00	76.37
25	I4	Intron	1	9.79	0.87	53.17	2.43	0.44	0.00	24.80
26	I4_SR1	SilentIntronRegion	1	6.22	1.56	43.35	3.18	0.72	0.00	22.39
27	I4_AR1	ActiveIntronRegion	1	11.08	1.04	62.11	2.40	0.35	0.00	32.54
28	I4_SR2	SilentIntronRegion	1	11.50	0.00	49.27	2.13	0.25	0.00	13.17
29	E5_Aa	NovelBoundary	1	21.05	0.00	70.36	4.01	0.00	0.00	20.85
30	ER5a	ExonRegion	0	214.85	38.74	525.49	128.31	0.33	1.48	79.10
31	E5_Da	NovelBoundary	1	22.65	2.60	64.47	4.06	0.00	0.00	22.90
32	E5a_E6a	KnownJunction	1	206.69	21.52	466.07	92.90	0.00	0.00	50.16
33	I5_SR2	SilentIntronRegion	1	8.38	1.43	38.90	0.56	0.00	0.00	12.46
34	ER6a	ExonRegion	0	109.73	11.52	303.83	84.83	0.60	0.00	50.49
35	E6_Da	NovelBoundary	1	7.03	1.50	40.84	4.44	0.00	0.00	16.15
36	E6a_E7a	KnownJunction	0	67.49	10.22	227.31	83.25	0.00	0.00	51.46
37	I6	Intron	1	9.50	0.87	43.19	3.30	0.11	0.13	12.62
38	I6_SR1	SilentIntronRegion	1	10.51	0.87	47.81	3.33	0.13	0.15	13.68
39	E7_Aa	NovelBoundary	0	16.49	7.51	58.14	3.49	0.00	1.50	13.01
40	ER7a	ExonRegion	0	128.74	18.84	329.76	80.22	0.63	0.90	45.51
41	E7a_E8a	KnownJunction	0	147.26	8.43	347.03	43.73	0.00	3.06	39.97
42	E7a_E9a	NovelJunction	1	13.02	5.41	78.42	31.34	0.00	0.00	4.03
43	I7	Intron	1	4.09	1.02	19.48	1.14	0.00	0.09	13.93
44	I7_SR1	SilentIntronRegion	1	4.09	1.02	19.52	1.14	0.00	0.09	13.96
45	ER8a	ExonRegion	0	138.43	16.31	332.57	48.24	0.63	2.64	56.08
46	E8_Da	NovelBoundary	0	13.19	5.49	37.29	9.24	1.15	1.23	20.42
47	E8a_E9a	KnownJunction	0	105.55	9.69	308.37	41.50	0.00	1.39	54.60
48	I8	Intron	1	7.98	0.79	24.13	2.46	0.13	0.23	12.16
49	I8_SR1	SilentIntronRegion	1	12.06	0.62	29.55	1.64	0.28	0.00	12.13
50	I8_AR1	ActiveIntronRegion	1	9.41	0.00	29.62	2.64	0.00	0.00	15.38
51	I8_AR2	ActiveIntronRegion	1	4.64	2.71	21.19	4.46	0.12	0.27	12.75
52	I8_AR3	ActiveIntronRegion	1	7.01	0.18	23.49	2.37	0.08	0.54	12.94
53	E9_Aa	NovelBoundary	1	7.09	0.00	25.38	0.00	0.00	1.23	18.47
54	ER9a	ExonRegion	0	148.00	28.64	474.13	103.67	0.48	2.31	83.61
55	E9_Da	NovelBoundary	1	16.02	6.33	54.09	7.80	0.00	0.00	22.39
56	E9a_E10a	KnownJunction	0	118.62	19.83	414.83	125.89	0.00	3.32	68.91
57	E10_Aa	NovelBoundary	1	8.93	4.68	31.43	4.04	0.00	3.27	18.13
58	ER10a	ExonRegion	0	142.41	25.34	476.36	111.51	0.51	5.69	85.71
59	E10_Da	NovelBoundary	1	18.21	0.00	70.70	4.52	0.00	1.10	18.37
60	E10a_E11a	KnownJunction	0	104.31	21.23	332.70	88.21	0.00	4.45	47.35
61	I10	Intron	1	29.13	1.98	93.99	7.94	0.07	1.33	24.49
62	I10_SR1	SilentIntronRegion	1	37.93	2.42	121.74	9.68	0.10	1.77	31.39
63	E11_Aa	NovelBoundary	1	24.83	1.00	88.95	8.24	0.00	0.00	20.98
64	ER11a	ExonRegion	0	139.68	17.97	426.67	95.67	0.44	4.43	66.23
65	E11a_E12a	KnownJunction	0	125.78	15.92	436.41	89.10	0.00	2.73	59.95
66	ER12a	ExonRegion	0	145.73	18.92	463.52	110.62	0.61	0.70	80.76
67	E12_Da	NovelBoundary	0	58.73	9.96	174.83	15.12	0.00	0.00	20.67
68	E12a_E13a	KnownJunction	0	106.25	17.13	446.10	97.72	0.00	0.00	43.32
69	ER13a	ExonRegion	0	120.83	16.18	515.79	104.20	0.56	1.63	63.63
70	E13a_E14a	KnownJunction	0	109.72	18.31	436.28	81.25	0.00	1.66	33.69
71	E14_Aa	NovelBoundary	1	3.62	1.63	26.53	7.86	0.00	1.05	17.33
72	ER14a	ExonRegion	0	94.12	12.09	424.25	70.92	0.09	1.48	42.99
73	E14a_E15a	KnownJunction	0	59.88	9.69	354.54	75.83	0.95	0.00	37.99
74	ER15a	ExonRegion	0	67.24	9.65	296.58	63.48	0.50	0.00	29.54
75	E15a_E16a	KnownJunction	0	69.70	8.38	220.77	49.96	0.00	0.00	23.89
76	ER16a	ExonRegion	0	60.40	9.40	240.51	54.56	0.33	0.00	34.02
77	E16a_E17a	KnownJunction	0	72.23	6.12	316.91	65.18	0.00	0.00	49.11
78	ER17a	ExonRegion	0	77.53	6.93	294.80	64.16	0.65	0.00	45.98
79	E17a_E18a	KnownJunction	1	57.23	3.42	248.32	50.31	0.97	0.00	25.08
80	ER18a	ExonRegion	0	74.69	5.86	275.28	51.37	0.30	0.56	41.89
81	E18a_E19a	KnownJunction	0	58.15	6.83	210.58	42.37	0.00	2.71	44.89
82	ER19a	ExonRegion	0	84.68	11.10	323.93	72.69	0.87	5.16	64.58
83	E19a_E20a	KnownJunction	0	84.58	8.43	328.02	88.70	0.00	3.70	77.48
84	ER20a	ExonRegion	0	86.91	14.60	378.26	79.84	0.00	0.38	76.45
85	E20a_E21a	KnownJunction	0	94.01	13.29	340.75	53.91	0.00	0.00	40.39
86	ER21a	ExonRegion	0	88.85	14.68	368.22	72.06	0.00	0.00	55.52
87	E21a_E22a	KnownJunction	0	118.47	20.05	398.20	70.44	0.00	0.00	61.15
88	ER22a	ExonRegion	0	102.13	15.70	419.90	87.55	0.19	0.07	67.43
89	E22a_E23a	KnownJunction	0	126.66	12.45	463.75	118.79	2.24	1.15	69.51
90	ER23a	ExonRegion	0	126.38	16.23	500.55	108.69	0.39	1.15	94.57
91	E23a_E24a	KnownJunction	0	110.75	15.32	433.85	72.01	0.00	0.00	78.32
92	ER24a	ExonRegion	0	90.23	12.96	390.51	72.40	0.43	1.72	53.44
93	E24_Da	NovelBoundary	0	37.89	8.28	203.53	29.66	1.18	1.02	28.40
94	E24a_E25a	KnownJunction	0	35.00	6.04	146.49	59.44	0.00	3.11	24.42
95	I24	Intron	0	24.27	1.24	115.39	5.72	0.00	0.63	7.50
96	I24_AR1	ActiveIntronRegion	0	24.55	1.26	116.86	5.79	0.00	0.63	7.59
97	E25_Aa	NovelBoundary	0	35.45	3.26	164.57	27.52	0.90	0.00	22.37
98	ER25a	ExonRegion	0	54.20	6.05	229.94	66.44	0.33	1.68	31.36
99	E25_Da	NovelBoundary	0	35.40	1.31	122.09	5.04	0.00	0.00	14.04
100	E25a_E26a	KnownJunction	0	25.97	9.69	66.88	78.56	0.00	0.00	19.78
101	I25	Intron	0	48.15	1.40	163.84	5.91	0.37	0.55	12.59
102	I25_AR1	ActiveIntronRegion	0	41.69	0.00	138.43	7.27	0.71	0.31	8.74
103	I25_SR1	SilentIntronRegion	0	104.22	0.00	354.90	9.75	0.21	0.65	19.38
104	I25_AR3	ActiveIntronRegion	0	34.98	2.34	120.31	4.32	0.28	0.62	12.21
105	E26_Aa	NovelBoundary	0	36.12	4.26	78.81	4.39	1.18	0.00	10.98
106	ER26a	ExonRegion	1	63.95	5.17	284.81	65.44	0.79	2.25	40.62
107	E26a_E27a	KnownJunction	1	84.40	1.13	344.86	59.36	0.00	3.43	32.90
108	ER27a	ExonRegion	1	95.21	5.06	339.25	64.46	0.40	3.74	46.46
109	E27a_E28a	KnownJunction	1	102.81	3.05	387.63	79.27	2.17	4.05	54.19
110	ER28a	ExonRegion	0	108.89	11.88	379.79	84.07	0.41	2.37	54.01
111	E28a_E29a	KnownJunction	0	103.63	13.08	402.10	79.05	0.00	1.66	60.42
112	ER29a	ExonRegion	0	114.15	12.28	421.87	88.93	0.26	2.14	48.95
113	E29a_E30a	KnownJunction	0	66.74	8.88	260.61	79.38	0.00	1.39	35.46
114	ER30a	ExonRegion	0	106.57	18.12	391.09	98.78	1.47	1.49	57.66
115	E30a_E31a	KnownJunction	0	98.47	28.01	355.19	102.32	0.00	1.63	48.34
116	ER31a	ExonRegion	0	186.50	16.21	584.83	83.51	1.90	3.60	52.18
117	IG46_AR1	ActiveIntergenicRegion	0	2.19	0.34	9.32	1.53	0.07	0.34	2.55