Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AARSD1	Gene	0	40.45	38.83	52.67	77.95	76.18	31.56	30.44
2	409399	Transcript	0	3.18	5.45	0.84	1.29	12.67	1.36	1.84
3	409446	Transcript	0	10.60	5.82	3.32	2.13	15.12	1.48	2.91
4	360221	Transcript	0	0.00	2.98	0.00	0.00	7.29	0.00	0.00
5	409103	Transcript	0	5.34	1.63	1.78	0.00	2.33	1.66	0.00
6	ER1a	ExonRegion	0	2.17	1.11	1.13	0.86	2.11	0.00	1.28
7	E1_Ab	KnownBoundary	0	5.29	1.44	3.72	1.68	8.16	0.00	2.26
8	ER1b	ExonRegion	0	5.86	3.66	3.04	2.33	7.46	0.00	2.08
9	E1_Da	KnownBoundary	0	8.24	4.68	1.60	4.14	2.03	0.00	0.72
10	E1a_E1c	KnownJunction	0	1.03	4.39	0.00	1.60	0.00	0.00	1.16
11	ER1c	ExonRegion	0	8.81	6.02	2.75	3.06	2.09	1.67	4.83
12	E1_Ac	KnownBoundary	0	5.39	1.31	2.14	2.87	2.10	3.62	0.89
13	ER1d	ExonRegion	0	8.35	5.72	3.30	2.14	9.33	4.08	4.02
14	E1b_E3a	KnownJunction	1	6.34	10.85	1.38	1.41	35.89	4.07	3.07
15	E1b_E4a	KnownJunction	0	1.52	0.00	0.00	0.00	1.18	0.00	1.49
16	ER2a	ExonRegion	0	0.00	2.98	0.00	0.00	7.29	0.00	0.00
17	ER2b	ExonRegion	0	1.32	3.81	0.02	0.00	5.76	0.00	0.03
18	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	1.06	0.00	0.00
19	ER3a	ExonRegion	0	7.83	7.03	2.25	1.65	18.40	1.75	5.52
20	E3a_E4a	KnownJunction	0	9.10	1.23	2.03	1.49	17.38	1.21	5.10
21	E4_Aa	NovelBoundary	1	17.26	4.05	5.09	1.11	5.51	4.98	5.30
22	ER4a	ExonRegion	1	17.58	6.07	1.95	2.01	35.44	1.23	12.11
23	E4a_E5a	KnownJunction	1	19.79	6.33	3.35	4.04	45.05	3.00	14.06
24	ER5a	ExonRegion	1	23.11	5.91	2.85	3.17	35.87	2.70	10.75
25	E5a_E6a	KnownJunction	0	8.50	6.12	0.65	3.22	17.82	0.00	7.15
26	E5a_E7a	KnownJunction	0	5.34	1.63	1.78	0.00	2.33	1.66	0.00
27	E6_Aa	NovelBoundary	1	15.79	7.57	2.10	1.46	4.31	1.66	2.89
28	ER6a	ExonRegion	1	22.71	8.60	5.05	4.35	30.86	0.49	10.97
29	E6a_E7a	KnownJunction	1	22.31	7.67	5.96	2.82	29.81	1.66	9.57
30	ER7a	ExonRegion	1	26.14	8.17	6.23	2.66	31.00	1.66	9.08
31	E7a_E8a	KnownJunction	1	12.53	10.17	2.53	1.46	29.46	0.00	0.73
32	E7a_E9a	KnownJunction	0	7.96	1.31	1.47	0.00	5.81	0.00	5.60
33	ER8a	ExonRegion	1	19.53	7.10	8.01	3.98	27.73	4.25	4.58
34	ER9a	ExonRegion	0	27.09	39.42	18.49	69.40	24.57	30.05	25.76
35	E9a_E10a	KnownJunction	0	54.08	84.99	72.83	155.48	44.24	59.60	63.52
36	ER10a	ExonRegion	0	67.83	100.07	129.15	204.06	180.62	84.96	86.50
37	E10a_E11a	KnownJunction	0	62.19	115.02	115.85	195.14	123.75	80.72	91.16
38	E11_Aa	NovelBoundary	1	8.51	9.59	3.41	2.52	8.41	0.00	9.92
39	ER11a	ExonRegion	0	54.51	110.22	130.93	232.28	141.22	83.96	88.00
40	E11a_E12a	KnownJunction	0	68.66	103.72	150.07	267.01	144.91	98.62	87.46
41	ER12a	ExonRegion	0	68.45	118.10	149.01	253.95	162.47	84.53	83.86
42	E12a_E13a	KnownJunction	0	86.94	130.94	167.01	224.67	168.98	111.94	80.21
43	ER13a	ExonRegion	0	82.51	115.56	169.32	250.64	204.36	103.57	92.63
44	E13a_E14a	KnownJunction	0	103.48	99.36	197.41	262.43	182.14	106.02	99.60
45	E13a_E15a	NovelJunction	0	4.47	3.15	0.75	9.29	2.03	10.59	0.75
46	I13	Intron	0	6.71	3.40	8.89	2.62	17.60	1.29	5.88
47	I13_AR1	ActiveIntronRegion	0	6.78	3.44	8.98	2.64	17.75	1.30	5.94
48	E14_Aa	NovelBoundary	0	26.05	7.67	28.42	11.16	27.06	8.12	11.52
49	ER14a	ExonRegion	0	141.46	109.62	227.24	278.91	271.62	111.98	100.00
50	E14_Da	NovelBoundary	0	30.43	4.12	20.13	8.32	36.49	2.89	12.11
51	E14a_E15a	KnownJunction	0	95.88	103.19	191.97	268.93	284.50	88.33	92.48
52	I14	Intron	0	13.50	8.81	14.93	15.68	13.07	11.30	5.54
53	I14_AR1	ActiveIntronRegion	0	13.57	8.86	15.02	15.77	13.12	11.37	5.57
54	E15_Aa	NovelBoundary	1	31.34	18.18	29.76	72.41	16.18	14.31	12.20
55	ER15a	ExonRegion	0	143.61	123.82	240.53	297.37	291.44	106.61	102.21
56	E15a_E16a	KnownJunction	0	156.45	134.04	221.73	311.68	252.04	115.94	92.97
57	E15a_E18a	NovelJunction	0	1.72	18.31	4.30	10.24	0.90	4.21	0.79
58	ER16a	ExonRegion	0	137.63	116.82	185.43	275.66	236.41	102.45	89.55
59	E16a_E17a	KnownJunction	0	98.17	59.93	136.75	98.26	249.62	42.93	67.44
60	E16a_E18a	NovelJunction	1	37.44	40.25	41.67	150.90	19.06	62.28	12.31
61	E16a_E19a	NovelJunction	0	0.95	4.78	8.10	8.91	1.06	1.05	0.00
62	ER17a	ExonRegion	0	108.08	52.75	139.89	81.14	213.62	28.40	73.74
63	E17_Da	NovelBoundary	0	5.61	12.48	5.50	5.82	9.29	4.88	1.96
64	E17a_E18a	KnownJunction	0	94.57	39.93	111.26	63.01	196.18	20.23	67.31
65	ER18a	ExonRegion	0	78.62	74.12	95.46	175.49	154.43	74.26	55.58
66	E18a_E19a	KnownJunction	0	86.49	85.70	81.95	201.91	124.76	86.24	59.88
67	ER19a	ExonRegion	0	50.87	67.07	51.28	131.55	71.60	56.71	34.87
68	ER19b	ExonRegion	0	13.74	10.02	9.27	22.06	17.11	10.27	6.11