Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CNTNAP1	Gene	0	2.42	1.31	8.25	2.76	36.63	11.81	11.11
2	264638	Transcript	0	1.94	0.84	8.00	2.04	37.82	9.99	11.93
3	ER1a	ExonRegion	0	0.41	0.65	0.79	1.52	6.26	2.63	2.12
4	E1a_E2a	KnownJunction	0	0.00	0.00	2.05	1.68	4.22	0.00	7.28
5	ER2a	ExonRegion	0	1.46	0.00	1.88	1.37	14.19	6.78	6.63
6	E2a_E3a	KnownJunction	0	1.42	0.00	1.39	0.00	22.18	7.10	4.51
7	ER3a	ExonRegion	0	0.50	0.48	3.32	1.47	19.11	8.44	7.99
8	E3a_E4a	KnownJunction	0	0.00	0.00	1.34	2.57	15.51	3.40	8.83
9	ER4a	ExonRegion	0	1.17	0.00	3.55	3.67	21.29	3.30	8.54
10	E4a_E5a	KnownJunction	0	0.00	0.00	3.68	3.90	25.84	2.92	6.45
11	ER5a	ExonRegion	0	0.76	0.45	2.48	2.29	23.66	5.25	9.42
12	E5a_E6a	KnownJunction	0	0.00	0.00	2.28	1.41	16.04	6.86	6.51
13	ER6a	ExonRegion	0	1.19	1.60	4.67	4.23	22.37	11.15	9.91
14	E6_Da	NovelBoundary	0	0.92	3.26	4.20	2.79	0.00	13.05	1.61
15	E6a_E7a	KnownJunction	0	0.75	1.21	2.43	0.00	16.74	10.61	7.42
16	I6_AR1	ActiveIntronRegion	0	1.24	1.17	2.33	2.81	0.69	9.08	0.43
17	E7_Aa	NovelBoundary	0	1.67	1.23	2.50	5.69	0.92	8.39	0.66
18	ER7a	ExonRegion	0	3.93	2.44	8.95	2.63	15.45	17.52	5.54
19	E7_Da	NovelBoundary	0	2.60	3.13	3.75	4.50	4.52	21.04	0.89
20	E7a_E8a	KnownJunction	0	1.03	0.00	3.00	0.00	14.71	9.97	5.25
21	I7	Intron	0	3.56	2.32	6.09	4.41	4.59	24.57	1.84
22	I7_SR1	SilentIntronRegion	0	5.17	2.32	6.34	4.28	4.55	14.89	1.55
23	I7_AR4	ActiveIntronRegion	0	2.68	2.32	5.98	4.51	4.63	30.12	2.01
24	E8_Aa	NovelBoundary	0	1.69	5.52	13.09	5.88	2.17	20.42	1.26
25	ER8a	ExonRegion	0	3.84	3.49	8.87	3.82	20.87	21.70	6.29
26	E8_Da	NovelBoundary	0	1.99	0.00	5.98	3.96	2.33	10.77	0.62
27	E8a_E9a	KnownJunction	0	1.90	0.00	4.94	2.57	33.40	8.39	6.92
28	ER9a	ExonRegion	0	4.53	2.98	11.02	2.93	32.13	14.53	11.09
29	E9a_E10a	KnownJunction	0	0.00	0.00	2.05	1.25	20.96	3.32	3.48
30	ER10a	ExonRegion	0	0.97	1.14	6.60	2.69	29.19	9.27	9.26
31	E10a_E11a	KnownJunction	0	1.62	0.00	12.13	0.00	30.04	6.81	7.40
32	E11_Aa	NovelBoundary	0	3.50	2.39	3.95	2.65	1.15	10.08	0.72
33	ER11a	ExonRegion	0	1.71	0.00	8.47	5.70	39.82	15.24	11.59
34	E11a_E12a	KnownJunction	0	0.00	0.00	5.85	1.68	45.28	9.06	9.89
35	ER12a	ExonRegion	0	3.87	0.12	11.24	1.86	39.70	14.56	11.68
36	E12a_E13a	KnownJunction	0	2.77	1.13	8.05	3.36	32.00	11.68	10.69
37	ER13a	ExonRegion	0	2.58	2.19	8.82	2.18	40.29	8.16	12.93
38	E13a_E14a	KnownJunction	0	0.58	0.00	8.82	1.65	31.24	3.91	8.18
39	ER14a	ExonRegion	0	2.48	2.17	11.84	3.49	43.41	9.93	10.24
40	E14a_E15a	KnownJunction	0	0.97	1.34	4.77	1.44	29.51	1.18	7.09
41	ER15a	ExonRegion	0	1.61	2.08	9.52	1.99	32.30	6.47	11.13
42	E15a_E16a	KnownJunction	0	0.67	2.94	9.61	1.03	26.79	10.77	9.07
43	ER16a	ExonRegion	0	1.19	1.68	6.97	2.49	28.17	8.72	10.83
44	E16a_E17a	KnownJunction	0	0.95	0.00	3.61	0.00	25.96	7.91	11.71
45	ER17a	ExonRegion	0	3.44	2.08	7.76	2.13	32.03	10.68	13.22
46	E17a_E18a	KnownJunction	0	2.04	0.00	4.40	0.00	29.42	8.01	8.38
47	ER18a	ExonRegion	0	4.71	0.00	8.57	3.39	37.32	14.21	14.33
48	E18a_E19a	KnownJunction	0	5.34	0.00	9.30	1.68	45.67	11.93	17.24
49	ER19a	ExonRegion	0	2.03	1.23	9.49	2.28	41.81	13.29	14.30
50	E19a_E20a	KnownJunction	0	0.00	1.39	8.77	0.00	54.29	8.68	13.73
51	ER20a	ExonRegion	0	3.38	0.49	13.19	1.94	77.37	11.71	25.79
52	E20a_E21a	KnownJunction	0	0.75	1.60	15.78	2.95	67.94	14.69	22.93
53	ER21a	ExonRegion	0	2.23	0.84	12.02	2.29	77.99	17.93	23.73
54	E21a_E22a	KnownJunction	0	2.72	1.26	13.51	0.00	86.96	13.08	28.08
55	ER22a	ExonRegion	0	5.29	1.02	20.80	3.32	110.61	21.16	24.32
56	E22a_E23a	KnownJunction	0	4.22	0.00	21.34	1.65	106.71	10.34	27.80
57	E23_Aa	NovelBoundary	0	7.13	0.00	14.46	5.28	1.18	4.88	0.85
58	ER23a	ExonRegion	0	4.71	0.00	22.59	1.66	86.67	16.50	31.05
59	E23a_E24a	KnownJunction	0	3.20	0.00	15.45	2.60	67.80	17.50	21.12
60	ER24a	ExonRegion	0	2.22	1.39	8.00	3.06	36.54	12.43	8.61